Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1365 and DVU1366 are separated by 160 nucleotides DVU1366 and tatA are separated by 62 nucleotides tatA and DVU1368 are separated by 111 nucleotides
DVU1365: DVU1365 - heme-binding protein, putative (TIGR), at 1,444,130 to 1,444,978
DVU1365
DVU1366: DVU1366 - lipoprotein, putative (TIGR), at 1,445,139 to 1,446,044
DVU1366
DVU1367: tatA - twin-arginine translocation protein, TatA/E family (TIGR), at 1,446,107 to 1,446,304
tatA
DVU1368: DVU1368 - rhodanese-like domain protein (TIGR), at 1,446,416 to 1,448,038
DVU1368
Position (kb)
1445
1446
1447 Strain fitness (log2 ratio)
-2
-1
0
1 at 1444.147 kb on + strand at 1444.161 kb on - strand at 1444.964 kb on + strand at 1444.966 kb on - strand at 1445.183 kb on - strand at 1445.186 kb on + strand at 1445.217 kb on - strand at 1445.273 kb on - strand, within DVU1366 at 1445.319 kb on - strand, within DVU1366 at 1445.332 kb on + strand, within DVU1366 at 1445.426 kb on + strand, within DVU1366 at 1445.426 kb on + strand, within DVU1366 at 1445.438 kb on + strand, within DVU1366 at 1445.438 kb on + strand, within DVU1366 at 1445.438 kb on + strand, within DVU1366 at 1445.446 kb on - strand, within DVU1366 at 1445.446 kb on - strand, within DVU1366 at 1445.554 kb on + strand, within DVU1366 at 1445.556 kb on + strand, within DVU1366 at 1445.637 kb on - strand, within DVU1366 at 1445.640 kb on + strand, within DVU1366 at 1445.822 kb on + strand, within DVU1366 at 1445.842 kb on - strand, within DVU1366 at 1445.847 kb on - strand, within DVU1366 at 1445.848 kb on + strand, within DVU1366 at 1445.897 kb on - strand, within DVU1366 at 1445.899 kb on + strand, within DVU1366 at 1445.907 kb on - strand, within DVU1366 at 1445.912 kb on - strand, within DVU1366 at 1445.955 kb on + strand at 1445.979 kb on - strand at 1445.991 kb on - strand at 1446.343 kb on - strand at 1446.343 kb on - strand at 1446.343 kb on - strand at 1446.343 kb on - strand at 1446.361 kb on - strand at 1446.381 kb on - strand at 1446.554 kb on + strand at 1446.588 kb on + strand, within DVU1368 at 1446.618 kb on + strand, within DVU1368 at 1446.618 kb on + strand, within DVU1368 at 1446.626 kb on - strand, within DVU1368 at 1446.725 kb on + strand, within DVU1368 at 1446.745 kb on + strand, within DVU1368 at 1446.752 kb on + strand, within DVU1368 at 1446.760 kb on - strand, within DVU1368 at 1446.764 kb on + strand, within DVU1368 at 1446.796 kb on - strand, within DVU1368 at 1446.967 kb on + strand, within DVU1368 at 1447.007 kb on - strand, within DVU1368
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 1,444,147 + -0.4 1,444,161 - -0.2 1,444,964 + -0.4 1,444,966 - -0.2 1,445,183 - -0.0 1,445,186 + -0.2 1,445,217 - -0.3 1,445,273 - DVU1366 0.15 -0.2 1,445,319 - DVU1366 0.20 -0.1 1,445,332 + DVU1366 0.21 -1.0 1,445,426 + DVU1366 0.32 +0.1 1,445,426 + DVU1366 0.32 -0.1 1,445,438 + DVU1366 0.33 -0.1 1,445,438 + DVU1366 0.33 +0.1 1,445,438 + DVU1366 0.33 -0.1 1,445,446 - DVU1366 0.34 -0.8 1,445,446 - DVU1366 0.34 -0.5 1,445,554 + DVU1366 0.46 +0.2 1,445,556 + DVU1366 0.46 +0.6 1,445,637 - DVU1366 0.55 +0.1 1,445,640 + DVU1366 0.55 +0.1 1,445,822 + DVU1366 0.75 -2.4 1,445,842 - DVU1366 0.78 +0.0 1,445,847 - DVU1366 0.78 +0.5 1,445,848 + DVU1366 0.78 -1.3 1,445,897 - DVU1366 0.84 +0.5 1,445,899 + DVU1366 0.84 -0.2 1,445,907 - DVU1366 0.85 +0.7 1,445,912 - DVU1366 0.85 -0.5 1,445,955 + +0.1 1,445,979 - +0.5 1,445,991 - -0.3 1,446,343 - -0.3 1,446,343 - +0.0 1,446,343 - +0.9 1,446,343 - -1.7 1,446,361 - -0.5 1,446,381 - +0.2 1,446,554 + -0.4 1,446,588 + DVU1368 0.11 -0.1 1,446,618 + DVU1368 0.12 -0.2 1,446,618 + DVU1368 0.12 -0.3 1,446,626 - DVU1368 0.13 -0.2 1,446,725 + DVU1368 0.19 -0.0 1,446,745 + DVU1368 0.20 -0.1 1,446,752 + DVU1368 0.21 -0.1 1,446,760 - DVU1368 0.21 -0.2 1,446,764 + DVU1368 0.21 -0.5 1,446,796 - DVU1368 0.23 -0.5 1,446,967 + DVU1368 0.34 -0.2 1,447,007 - DVU1368 0.36 +0.0
Or see this region's nucleotide sequence