Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07220

Experiment: R2A with sodium bromide 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium bromide 250 mM
1,548,470	-				-0.6
1,548,470	-				-0.6
1,548,470	-				-1.5
1,548,470	-				+1.7
1,548,470	-				+0.1
1,548,470	-				-0.3
1,548,470	-				+0.7
1,548,470	-				-0.3
1,548,470	-				-1.1
1,548,470	-				-0.9
1,548,470	-				-0.3
1,548,470	-				+1.7
1,548,486	-				-0.3
1,548,486	-				-0.3
1,548,565	+				-2.5
1,548,565	+				-0.3
1,548,565	+				+0.1
1,548,565	+				+0.1
1,548,565	+				-2.0
1,548,565	+				+0.7
1,548,566	-				-2.3
1,548,566	-				+0.1
1,548,566	-				-1.9
1,548,883	+		LRK54_RS07215	0.40	-1.5
1,548,884	+		LRK54_RS07215	0.41	+0.7
1,548,884	+		LRK54_RS07215	0.41	-1.1
1,548,884	+		LRK54_RS07215	0.41	+0.9
1,548,884	+		LRK54_RS07215	0.41	-2.0
1,548,884	+		LRK54_RS07215	0.41	+0.7
1,548,884	+		LRK54_RS07215	0.41	-1.5
1,548,884	+		LRK54_RS07215	0.41	+0.7
1,548,884	+		LRK54_RS07215	0.41	-1.7
1,548,884	+		LRK54_RS07215	0.41	-0.3
1,548,884	+		LRK54_RS07215	0.41	-0.3
1,548,884	+		LRK54_RS07215	0.41	-2.5
1,548,884	+		LRK54_RS07215	0.41	-2.0
1,548,884	+		LRK54_RS07215	0.41	-0.3
1,548,884	+		LRK54_RS07215	0.41	-1.3
1,548,884	+		LRK54_RS07215	0.41	+0.7
1,548,884	+		LRK54_RS07215	0.41	-2.0
1,548,884	+		LRK54_RS07215	0.41	+1.7
1,548,884	+		LRK54_RS07215	0.41	-0.6
1,548,884	+		LRK54_RS07215	0.41	-0.6
1,548,884	+		LRK54_RS07215	0.41	-0.3
1,548,884	+		LRK54_RS07215	0.41	-0.9
1,548,884	+		LRK54_RS07215	0.41	-0.3
1,548,884	+		LRK54_RS07215	0.41	-0.9
1,548,884	+		LRK54_RS07215	0.41	+0.1
1,548,884	+		LRK54_RS07215	0.41	-0.3
1,548,884	+		LRK54_RS07215	0.41	+1.7
1,548,885	-		LRK54_RS07215	0.41	-0.6
1,548,885	-		LRK54_RS07215	0.41	-2.0
1,548,885	-		LRK54_RS07215	0.41	-1.1
1,548,885	-		LRK54_RS07215	0.41	-1.5
1,548,885	-		LRK54_RS07215	0.41	-0.9
1,548,885	-		LRK54_RS07215	0.41	-2.3
1,548,885	-		LRK54_RS07215	0.41	+0.7
1,548,885	-		LRK54_RS07215	0.41	-0.6
1,548,885	-		LRK54_RS07215	0.41	+0.1
1,548,885	-		LRK54_RS07215	0.41	-0.3
1,548,885	-		LRK54_RS07215	0.41	+0.1
1,548,885	-		LRK54_RS07215	0.41	-2.5
1,548,885	-		LRK54_RS07215	0.41	-2.1
1,548,885	-		LRK54_RS07215	0.41	-1.5
1,548,885	-		LRK54_RS07215	0.41	+0.7
1,548,885	-		LRK54_RS07215	0.41	-2.7
1,548,992	+		LRK54_RS07215	0.54	-0.3
1,548,992	+		LRK54_RS07215	0.54	-1.7
1,548,992	+		LRK54_RS07215	0.54	-0.6
1,548,992	+		LRK54_RS07215	0.54	-2.3
1,548,993	-		LRK54_RS07215	0.55	-2.5
1,548,993	-		LRK54_RS07215	0.55	-0.3
1,549,145	+		LRK54_RS07215	0.74	+0.1
1,549,145	+		LRK54_RS07215	0.74	-0.3
1,549,145	+		LRK54_RS07215	0.74	-1.5
1,549,175	+		LRK54_RS07215	0.78	-0.3
1,549,175	+		LRK54_RS07215	0.78	-1.5
1,549,175	+		LRK54_RS07215	0.78	-0.6
1,549,175	+		LRK54_RS07215	0.78	-0.6
1,549,175	+		LRK54_RS07215	0.78	-1.1
1,549,176	-		LRK54_RS07215	0.78	-0.6
1,549,176	-		LRK54_RS07215	0.78	-2.0
1,549,176	-		LRK54_RS07215	0.78	-0.9
1,549,176	-		LRK54_RS07215	0.78	-1.1
1,549,176	-		LRK54_RS07215	0.78	-2.6
1,549,298	+				-2.2
1,549,298	+				-1.6
1,549,298	+				-1.5
1,549,298	+				+0.7
1,549,298	+				-0.3
1,549,298	+				+0.1
1,549,298	+				+0.1
1,549,298	+				+0.1
1,549,299	-				-1.1
1,549,299	-				-1.1
1,549,299	-				-2.2
1,549,299	-				-2.1
1,549,299	-				+1.7
1,549,299	-				-0.9
1,549,707	+		LRK54_RS07220	0.33	+0.1
1,549,707	+		LRK54_RS07220	0.33	-1.9
1,549,707	+		LRK54_RS07220	0.33	+0.7
1,549,707	+		LRK54_RS07220	0.33	-0.6
1,549,707	+		LRK54_RS07220	0.33	-1.3
1,549,707	+		LRK54_RS07220	0.33	+0.1
1,549,707	+		LRK54_RS07220	0.33	-0.6
1,549,707	+		LRK54_RS07220	0.33	-1.1
1,549,707	+		LRK54_RS07220	0.33	+0.7
1,549,707	+		LRK54_RS07220	0.33	-1.6
1,549,707	+		LRK54_RS07220	0.33	+1.7
1,549,707	+		LRK54_RS07220	0.33	-1.3
1,549,707	+		LRK54_RS07220	0.33	-0.6
1,549,707	+		LRK54_RS07220	0.33	-1.6
1,549,707	+		LRK54_RS07220	0.33	-0.5
1,549,857	+		LRK54_RS07220	0.50	+0.7
1,549,857	+		LRK54_RS07220	0.50	-0.6
1,549,857	+		LRK54_RS07220	0.50	-1.7
1,549,857	+		LRK54_RS07220	0.50	-1.4
1,549,857	+		LRK54_RS07220	0.50	-0.9
1,549,857	+		LRK54_RS07220	0.50	-0.9
1,549,857	+		LRK54_RS07220	0.50	-1.9
1,549,857	+		LRK54_RS07220	0.50	-0.3
1,549,857	+		LRK54_RS07220	0.50	+1.3
1,549,857	+		LRK54_RS07220	0.50	-0.6
1,549,857	+		LRK54_RS07220	0.50	-0.3
1,549,858	-		LRK54_RS07220	0.50	+0.1
1,549,858	-		LRK54_RS07220	0.50	-2.2
1,549,858	-		LRK54_RS07220	0.50	+2.7
1,549,858	-		LRK54_RS07220	0.50	-1.5
1,549,858	-		LRK54_RS07220	0.50	+1.7
1,549,858	-		LRK54_RS07220	0.50	-0.6
1,549,899	+		LRK54_RS07220	0.55	-0.1
1,549,899	+		LRK54_RS07220	0.55	-0.9
1,549,899	+		LRK54_RS07220	0.55	+0.7
1,549,899	+		LRK54_RS07220	0.55	-2.2
1,549,915	-		LRK54_RS07220	0.57	+0.7
1,549,915	-		LRK54_RS07220	0.57	-1.3
1,549,998	+		LRK54_RS07220	0.66	-0.9
1,549,998	+		LRK54_RS07220	0.66	-0.3
1,549,998	+		LRK54_RS07220	0.66	-0.3
1,549,998	+		LRK54_RS07220	0.66	-0.9
1,549,998	+		LRK54_RS07220	0.66	-1.1
1,549,998	+		LRK54_RS07220	0.66	+1.7
1,549,998	+		LRK54_RS07220	0.66	+1.7
1,549,998	+		LRK54_RS07220	0.66	-0.3
1,549,999	-		LRK54_RS07220	0.66	-1.6
1,549,999	-		LRK54_RS07220	0.66	-1.1
1,549,999	-		LRK54_RS07220	0.66	-0.6
1,549,999	-		LRK54_RS07220	0.66	-1.1
1,549,999	-		LRK54_RS07220	0.66	-1.1
1,549,999	-		LRK54_RS07220	0.66	-0.3
1,549,999	-		LRK54_RS07220	0.66	-0.9
1,549,999	-		LRK54_RS07220	0.66	-0.3
1,549,999	-		LRK54_RS07220	0.66	-0.3
1,549,999	-		LRK54_RS07220	0.66	-0.3
1,549,999	-		LRK54_RS07220	0.66	+0.7
1,550,067	+		LRK54_RS07220	0.74	-2.2
1,550,067	+		LRK54_RS07220	0.74	-1.1
1,550,067	+		LRK54_RS07220	0.74	+0.1
1,550,067	+		LRK54_RS07220	0.74	-0.6
1,550,067	+		LRK54_RS07220	0.74	-1.7
1,550,067	+		LRK54_RS07220	0.74	+0.3
1,550,067	+		LRK54_RS07220	0.74	+0.2
1,550,067	+		LRK54_RS07220	0.74	+0.7
1,550,067	+		LRK54_RS07220	0.74	-0.9
1,550,067	+		LRK54_RS07220	0.74	-1.1
1,550,067	+		LRK54_RS07220	0.74	-0.9
1,550,067	+		LRK54_RS07220	0.74	-0.1
1,550,067	+		LRK54_RS07220	0.74	-1.0
1,550,067	+		LRK54_RS07220	0.74	-0.2
1,550,067	+		LRK54_RS07220	0.74	-1.3
1,550,067	+		LRK54_RS07220	0.74	-1.7
1,550,067	+		LRK54_RS07220	0.74	-2.1
1,550,067	+		LRK54_RS07220	0.74	-1.6
1,550,067	+		LRK54_RS07220	0.74	-0.9
1,550,068	-		LRK54_RS07220	0.74	-0.9
1,550,068	-		LRK54_RS07220	0.74	-0.6
1,550,068	-		LRK54_RS07220	0.74	-2.5
1,550,076	+		LRK54_RS07220	0.75	-0.3
1,550,076	+		LRK54_RS07220	0.75	-2.3
1,550,076	+		LRK54_RS07220	0.75	+0.1
1,550,076	+		LRK54_RS07220	0.75	-1.6
1,550,076	+		LRK54_RS07220	0.75	-0.7
1,550,077	-		LRK54_RS07220	0.75	-1.5
1,550,077	-		LRK54_RS07220	0.75	-2.7
1,550,077	-		LRK54_RS07220	0.75	+1.1
1,550,166	+		LRK54_RS07220	0.85	-1.6
1,550,167	-		LRK54_RS07220	0.85	-0.9
1,550,208	+		LRK54_RS07220	0.90	-1.3
1,550,208	+		LRK54_RS07220	0.90	+0.7
1,550,208	+		LRK54_RS07220	0.90	-0.3
1,550,209	-				+1.7
1,550,209	-				-1.9
1,550,295	+				-0.3
1,550,295	+				-0.8
1,550,295	+				-0.6
1,550,295	+				-0.7
1,550,296	-				+0.7
1,550,296	-				-0.4
1,550,296	-				+0.8
1,550,296	-				-0.9
1,550,296	-				-1.1
1,550,296	-				-0.4
1,550,296	-				-1.5
1,550,296	-				+0.5
1,550,296	-				-0.4
1,550,320	+				+1.6
1,550,320	+				-1.2
1,550,321	-				+2.1
1,550,454	+		LRK54_RS07225	0.15	-0.2
1,550,454	+		LRK54_RS07225	0.15	+0.1
1,550,454	+		LRK54_RS07225	0.15	-0.2
1,550,454	+		LRK54_RS07225	0.15	-0.7
1,550,454	+		LRK54_RS07225	0.15	+0.3
1,550,454	+		LRK54_RS07225	0.15	-0.8
1,550,454	+		LRK54_RS07225	0.15	+0.0
1,550,454	+		LRK54_RS07225	0.15	-0.0
1,550,454	+		LRK54_RS07225	0.15	+0.7
1,550,454	+		LRK54_RS07225	0.15	-0.7
1,550,454	+		LRK54_RS07225	0.15	-0.4
1,550,454	+		LRK54_RS07225	0.15	+0.1
1,550,454	+		LRK54_RS07225	0.15	+0.4
1,550,455	-		LRK54_RS07225	0.15	-0.6
1,550,455	-		LRK54_RS07225	0.15	+1.7
1,550,455	-		LRK54_RS07225	0.15	-2.4
1,550,455	-		LRK54_RS07225	0.15	-2.1
1,550,455	-		LRK54_RS07225	0.15	-2.6
1,550,455	-		LRK54_RS07225	0.15	-0.2
1,550,455	-		LRK54_RS07225	0.15	-1.6
1,550,455	-		LRK54_RS07225	0.15	+0.2
1,550,455	-		LRK54_RS07225	0.15	-0.6
1,550,455	-		LRK54_RS07225	0.15	-1.1
1,550,455	-		LRK54_RS07225	0.15	+0.7
1,550,455	-		LRK54_RS07225	0.15	-0.3
1,550,455	-		LRK54_RS07225	0.15	-0.8
1,550,455	-		LRK54_RS07225	0.15	+0.7
1,550,455	-		LRK54_RS07225	0.15	-0.1
1,550,455	-		LRK54_RS07225	0.15	+0.1
1,550,455	-		LRK54_RS07225	0.15	-0.1
1,550,455	-		LRK54_RS07225	0.15	-0.7
1,550,455	-		LRK54_RS07225	0.15	-1.9
1,550,455	-		LRK54_RS07225	0.15	-0.7
1,550,455	-		LRK54_RS07225	0.15	+0.4
1,550,456	+		LRK54_RS07225	0.15	+1.0
1,550,456	+		LRK54_RS07225	0.15	-2.6
1,550,456	+		LRK54_RS07225	0.15	+0.6
1,550,456	+		LRK54_RS07225	0.15	+0.3
1,550,457	-		LRK54_RS07225	0.15	+0.7
1,550,457	-		LRK54_RS07225	0.15	-0.7
1,550,457	-		LRK54_RS07225	0.15	-0.9
1,550,457	-		LRK54_RS07225	0.15	+0.6
1,550,465	+		LRK54_RS07225	0.16	+0.1
1,550,472	+		LRK54_RS07225	0.18	-0.1
1,550,472	+		LRK54_RS07225	0.18	-1.1
1,550,472	+		LRK54_RS07225	0.18	+0.2
1,550,472	+		LRK54_RS07225	0.18	-0.4
1,550,472	+		LRK54_RS07225	0.18	-0.3
1,550,472	+		LRK54_RS07225	0.18	+0.6
1,550,472	+		LRK54_RS07225	0.18	+0.7
1,550,472	+		LRK54_RS07225	0.18	+0.7
1,550,472	+		LRK54_RS07225	0.18	-1.1
1,550,472	+		LRK54_RS07225	0.18	-2.2
1,550,472	+		LRK54_RS07225	0.18	+0.3
1,550,472	+		LRK54_RS07225	0.18	-0.7
1,550,472	+		LRK54_RS07225	0.18	-1.7
1,550,472	+		LRK54_RS07225	0.18	-1.5
1,550,472	+		LRK54_RS07225	0.18	+1.0
1,550,472	+		LRK54_RS07225	0.18	+0.8
1,550,472	+		LRK54_RS07225	0.18	+0.2
1,550,472	+		LRK54_RS07225	0.18	-0.2
1,550,473	-		LRK54_RS07225	0.18	-0.6
1,550,473	-		LRK54_RS07225	0.18	-1.1
1,550,473	-		LRK54_RS07225	0.18	-1.1
1,550,473	-		LRK54_RS07225	0.18	+0.2
1,550,473	-		LRK54_RS07225	0.18	-0.9
1,550,473	-		LRK54_RS07225	0.18	-0.6
1,550,473	-		LRK54_RS07225	0.18	-0.5
1,550,473	-		LRK54_RS07225	0.18	-0.6
1,550,473	-		LRK54_RS07225	0.18	-1.4
1,550,473	-		LRK54_RS07225	0.18	-0.9
1,550,473	-		LRK54_RS07225	0.18	-0.8
1,550,473	-		LRK54_RS07225	0.18	-1.3
1,550,473	-		LRK54_RS07225	0.18	-0.5
1,550,473	-		LRK54_RS07225	0.18	+0.3
1,550,473	-		LRK54_RS07225	0.18	-1.9
1,550,502	+		LRK54_RS07225	0.22	+1.7
1,550,502	+		LRK54_RS07225	0.22	-1.6
1,550,502	+		LRK54_RS07225	0.22	+0.6
1,550,502	+		LRK54_RS07225	0.22	-0.7
1,550,502	+		LRK54_RS07225	0.22	-1.1
1,550,502	+		LRK54_RS07225	0.22	+0.5
1,550,502	+		LRK54_RS07225	0.22	+0.1
1,550,503	-		LRK54_RS07225	0.22	-1.2
1,550,503	-		LRK54_RS07225	0.22	+0.1
1,550,503	-		LRK54_RS07225	0.22	-0.2
1,550,503	-		LRK54_RS07225	0.22	+0.6
1,550,503	-		LRK54_RS07225	0.22	-0.3
1,550,544	+		LRK54_RS07225	0.29	+0.0
1,550,544	+		LRK54_RS07225	0.29	-0.0
1,550,544	+		LRK54_RS07225	0.29	+0.7
1,550,544	+		LRK54_RS07225	0.29	-0.7
1,550,545	-		LRK54_RS07225	0.29	-0.3
1,550,545	-		LRK54_RS07225	0.29	-1.5
1,550,545	-		LRK54_RS07225	0.29	-0.5
1,550,545	-		LRK54_RS07225	0.29	-0.5
1,550,545	-		LRK54_RS07225	0.29	-0.6
1,550,545	-		LRK54_RS07225	0.29	-0.1
1,550,661	+		LRK54_RS07225	0.47	-1.5
1,550,661	+		LRK54_RS07225	0.47	-0.9
1,550,661	+		LRK54_RS07225	0.47	-0.4
1,550,662	-		LRK54_RS07225	0.47	-0.7
1,550,662	-		LRK54_RS07225	0.47	-1.0
1,550,662	-		LRK54_RS07225	0.47	-0.5
1,550,662	-		LRK54_RS07225	0.47	-0.1
1,550,662	-		LRK54_RS07225	0.47	-0.1
1,550,673	+		LRK54_RS07225	0.48	+0.4
1,550,673	+		LRK54_RS07225	0.48	+0.3
1,550,673	+		LRK54_RS07225	0.48	-2.4
1,550,673	+		LRK54_RS07225	0.48	+0.4
1,550,673	+		LRK54_RS07225	0.48	-0.6
1,550,673	+		LRK54_RS07225	0.48	-0.0
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