Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00785 and CCNA_03938 are separated by 183 nucleotides CCNA_03938 and CCNA_00787 are separated by 111 nucleotides
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442
_03938
CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420
_00787
Position (kb) 850
851 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 849.140 kb on - strand, within CCNA_00785 at 849.205 kb on + strand, within CCNA_00785 at 849.243 kb on - strand, within CCNA_00785 at 849.248 kb on + strand, within CCNA_00785 at 849.257 kb on - strand, within CCNA_00785 at 849.302 kb on - strand, within CCNA_00785 at 849.360 kb on + strand, within CCNA_00785 at 849.417 kb on + strand, within CCNA_00785 at 849.425 kb on - strand, within CCNA_00785 at 849.425 kb on - strand, within CCNA_00785 at 849.425 kb on - strand, within CCNA_00785 at 849.427 kb on + strand, within CCNA_00785 at 849.489 kb on - strand, within CCNA_00785 at 849.489 kb on - strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.542 kb on + strand, within CCNA_00785 at 849.542 kb on + strand, within CCNA_00785 at 849.550 kb on - strand, within CCNA_00785 at 849.550 kb on - strand, within CCNA_00785 at 849.592 kb on - strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.661 kb on + strand, within CCNA_00785 at 849.669 kb on + strand, within CCNA_00785 at 849.677 kb on - strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.761 kb on + strand at 849.761 kb on + strand at 849.769 kb on - strand at 849.857 kb on - strand at 849.867 kb on + strand at 849.870 kb on - strand at 849.872 kb on - strand at 849.879 kb on - strand at 849.880 kb on - strand at 849.880 kb on - strand at 849.928 kb on + strand at 849.935 kb on + strand at 849.943 kb on - strand at 849.948 kb on + strand at 849.948 kb on + strand at 849.956 kb on - strand at 849.956 kb on - strand at 849.966 kb on - strand at 849.966 kb on - strand at 849.977 kb on + strand at 849.989 kb on + strand at 850.035 kb on - strand at 850.035 kb on - strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.045 kb on - strand at 850.045 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.062 kb on - strand at 850.062 kb on - strand at 850.080 kb on + strand at 850.081 kb on + strand at 850.089 kb on - strand at 850.099 kb on - strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.134 kb on - strand at 850.158 kb on - strand, within CCNA_03938 at 850.273 kb on + strand, within CCNA_03938 at 850.280 kb on - strand, within CCNA_03938 at 850.281 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.321 kb on + strand, within CCNA_03938 at 850.327 kb on + strand, within CCNA_03938 at 850.353 kb on + strand, within CCNA_03938 at 850.391 kb on - strand, within CCNA_03938 at 850.424 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.431 kb on + strand at 850.438 kb on + strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.446 kb on - strand at 850.517 kb on - strand at 850.526 kb on + strand at 850.554 kb on - strand at 850.582 kb on + strand at 850.726 kb on + strand, within CCNA_00787 at 850.760 kb on + strand, within CCNA_00787 at 850.761 kb on + strand, within CCNA_00787 at 850.763 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.769 kb on - strand, within CCNA_00787 at 850.776 kb on - strand, within CCNA_00787 at 850.780 kb on + strand, within CCNA_00787 at 850.826 kb on - strand, within CCNA_00787 at 850.855 kb on - strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.924 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.936 kb on - strand, within CCNA_00787 at 850.953 kb on - strand, within CCNA_00787 at 850.981 kb on + strand, within CCNA_00787 at 850.991 kb on + strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 851.022 kb on - strand, within CCNA_00787 at 851.027 kb on + strand, within CCNA_00787 at 851.033 kb on + strand, within CCNA_00787 at 851.035 kb on - strand, within CCNA_00787 at 851.045 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.080 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.183 kb on + strand, within CCNA_00787 at 851.183 kb on - strand, within CCNA_00787 at 851.193 kb on + strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.201 kb on + strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.207 kb on + strand, within CCNA_00787 at 851.208 kb on - strand, within CCNA_00787 at 851.243 kb on + strand, within CCNA_00787 at 851.248 kb on + strand, within CCNA_00787 at 851.251 kb on - strand, within CCNA_00787 at 851.256 kb on - strand, within CCNA_00787 at 851.309 kb on + strand, within CCNA_00787 at 851.337 kb on - strand at 851.350 kb on - strand at 851.373 kb on + strand at 851.373 kb on + strand at 851.381 kb on - strand at 851.399 kb on - strand at 851.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 849,140 - CCNA_00785 0.55 +0.4 849,205 + CCNA_00785 0.59 -1.3 849,243 - CCNA_00785 0.61 -1.1 849,248 + CCNA_00785 0.61 +0.3 849,257 - CCNA_00785 0.62 -0.9 849,302 - CCNA_00785 0.64 +0.3 849,360 + CCNA_00785 0.68 -0.8 849,417 + CCNA_00785 0.71 -0.9 849,425 - CCNA_00785 0.71 +1.1 849,425 - CCNA_00785 0.71 -0.3 849,425 - CCNA_00785 0.71 +0.0 849,427 + CCNA_00785 0.72 +0.5 849,489 - CCNA_00785 0.75 +0.1 849,489 - CCNA_00785 0.75 +2.9 849,507 + CCNA_00785 0.76 -0.7 849,507 + CCNA_00785 0.76 +0.1 849,507 + CCNA_00785 0.76 +0.1 849,507 + CCNA_00785 0.76 +1.6 849,507 + CCNA_00785 0.76 +2.3 849,507 + CCNA_00785 0.76 -0.6 849,507 + CCNA_00785 0.76 -1.2 849,515 - CCNA_00785 0.76 +0.8 849,515 - CCNA_00785 0.76 +1.0 849,515 - CCNA_00785 0.76 -0.1 849,515 - CCNA_00785 0.76 -0.6 849,515 - CCNA_00785 0.76 +1.3 849,515 - CCNA_00785 0.76 -1.3 849,515 - CCNA_00785 0.76 -0.0 849,515 - CCNA_00785 0.76 +0.1 849,515 - CCNA_00785 0.76 -0.6 849,515 - CCNA_00785 0.76 -0.5 849,542 + CCNA_00785 0.78 -0.1 849,542 + CCNA_00785 0.78 -0.3 849,550 - CCNA_00785 0.78 -1.3 849,550 - CCNA_00785 0.78 -1.8 849,592 - CCNA_00785 0.81 +1.3 849,602 + CCNA_00785 0.81 +0.3 849,602 + CCNA_00785 0.81 +1.3 849,610 - CCNA_00785 0.82 +0.1 849,610 - CCNA_00785 0.82 +0.9 849,624 - CCNA_00785 0.83 +0.2 849,624 - CCNA_00785 0.83 -0.6 849,661 + CCNA_00785 0.85 +1.3 849,669 + CCNA_00785 0.85 +1.3 849,677 - CCNA_00785 0.86 +1.3 849,729 + CCNA_00785 0.89 +0.3 849,729 + CCNA_00785 0.89 +0.1 849,729 + CCNA_00785 0.89 -0.4 849,737 - CCNA_00785 0.89 -0.7 849,737 - CCNA_00785 0.89 -1.0 849,761 + +0.1 849,761 + +0.9 849,769 - -2.3 849,857 - +2.9 849,867 + -1.5 849,870 - -0.1 849,872 - +0.4 849,879 - -1.5 849,880 - +0.9 849,880 - +0.5 849,928 + -0.2 849,935 + -0.9 849,943 - +0.9 849,948 + +0.3 849,948 + -1.4 849,956 - +0.5 849,956 - +1.5 849,966 - +0.5 849,966 - +0.3 849,977 + +1.7 849,989 + -0.4 850,035 - +2.9 850,035 - +3.2 850,037 + -0.4 850,037 + +0.4 850,045 - +2.9 850,045 - +2.8 850,057 - +2.9 850,057 - +3.6 850,057 - +2.2 850,057 - +3.0 850,062 - +2.3 850,062 - +3.2 850,080 + +0.1 850,081 + -0.9 850,089 - +2.6 850,099 - +2.7 850,126 + -0.1 850,126 + +0.7 850,134 - +3.3 850,158 - CCNA_03938 0.13 +4.4 850,273 + CCNA_03938 0.48 +0.1 850,280 - CCNA_03938 0.50 +3.0 850,281 - CCNA_03938 0.50 +3.5 850,314 - CCNA_03938 0.61 +2.5 850,314 - CCNA_03938 0.61 +2.9 850,321 + CCNA_03938 0.63 +0.6 850,327 + CCNA_03938 0.65 -0.4 850,353 + CCNA_03938 0.72 -0.9 850,391 - CCNA_03938 0.84 +2.6 850,424 + +4.0 850,430 + -0.4 850,430 + +2.9 850,430 + +1.4 850,431 + +0.5 850,438 + +0.6 850,438 - +2.5 850,438 - +2.7 850,438 - +2.2 850,446 - +3.9 850,517 - +3.8 850,526 + +0.6 850,554 - +1.7 850,582 + +0.6 850,726 + CCNA_00787 0.20 -0.1 850,760 + CCNA_00787 0.24 +2.9 850,761 + CCNA_00787 0.24 -1.6 850,763 - CCNA_00787 0.24 +1.4 850,768 - CCNA_00787 0.25 +0.9 850,768 - CCNA_00787 0.25 +0.5 850,768 - CCNA_00787 0.25 -2.1 850,768 - CCNA_00787 0.25 +1.6 850,769 - CCNA_00787 0.25 +1.3 850,776 - CCNA_00787 0.26 +0.1 850,780 + CCNA_00787 0.26 -0.1 850,826 - CCNA_00787 0.31 +0.9 850,855 - CCNA_00787 0.35 +1.9 850,887 + CCNA_00787 0.38 +0.6 850,887 + CCNA_00787 0.38 +0.9 850,924 - CCNA_00787 0.43 +1.1 850,931 - CCNA_00787 0.43 +0.6 850,931 - CCNA_00787 0.43 +1.7 850,936 - CCNA_00787 0.44 +1.3 850,953 - CCNA_00787 0.46 +0.7 850,981 + CCNA_00787 0.49 -1.6 850,991 + CCNA_00787 0.50 -0.7 850,999 - CCNA_00787 0.51 +1.6 850,999 - CCNA_00787 0.51 +2.2 851,022 - CCNA_00787 0.54 +1.6 851,027 + CCNA_00787 0.55 -1.0 851,033 + CCNA_00787 0.55 +2.9 851,035 - CCNA_00787 0.55 +0.8 851,045 - CCNA_00787 0.57 -0.4 851,077 - CCNA_00787 0.60 +1.5 851,080 + CCNA_00787 0.61 +0.6 851,137 + CCNA_00787 0.67 +0.6 851,137 + CCNA_00787 0.67 -0.3 851,145 - CCNA_00787 0.68 -1.5 851,183 + CCNA_00787 0.73 +0.9 851,183 - CCNA_00787 0.73 -0.7 851,193 + CCNA_00787 0.74 +0.1 851,196 - CCNA_00787 0.74 -0.3 851,196 - CCNA_00787 0.74 +1.2 851,201 + CCNA_00787 0.75 -0.4 851,201 - CCNA_00787 0.75 +0.9 851,201 - CCNA_00787 0.75 +0.5 851,207 + CCNA_00787 0.75 -1.4 851,208 - CCNA_00787 0.75 +1.0 851,243 + CCNA_00787 0.79 +1.9 851,248 + CCNA_00787 0.80 +0.9 851,251 - CCNA_00787 0.80 -0.4 851,256 - CCNA_00787 0.81 +1.1 851,309 + CCNA_00787 0.87 -2.0 851,337 - +1.2 851,350 - -0.8 851,373 + -0.6 851,373 + -1.0 851,381 - -1.6 851,399 - -0.2 851,419 + -1.4
Or see this region's nucleotide sequence