Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03815

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,977,659	+		CCNA_03813	0.76	+2.3
3,977,676	-		CCNA_03813	0.77	-0.3
3,977,705	+		CCNA_03813	0.79	+2.2
3,977,715	+		CCNA_03813	0.80	+2.9
3,977,795	-		CCNA_03813	0.86	+0.5
3,977,900	-				-3.2
3,977,900	-				-0.7
3,977,932	+				+2.7
3,977,989	+				+2.6
3,977,990	+				+3.1
3,977,990	+				+2.7
3,977,990	+				+2.6
3,977,997	-				+0.1
3,977,998	-				-0.5
3,978,031	+				+0.9
3,978,062	-				+3.3
3,978,067	+				-0.8
3,978,076	+				+0.7
3,978,090	+				-0.9
3,978,097	+				-0.4
3,978,097	+				+1.2
3,978,098	-				+0.3
3,978,098	-				+1.1
3,978,106	-				+1.1
3,978,112	+				-2.1
3,978,112	+				-1.5
3,978,112	+				-1.4
3,978,120	-				+1.7
3,978,130	-		CCNA_03814	0.11	-0.9
3,978,155	+		CCNA_03814	0.16	-2.0
3,978,155	+		CCNA_03814	0.16	-0.2
3,978,163	-		CCNA_03814	0.18	+1.1
3,978,176	+		CCNA_03814	0.20	+0.5
3,978,203	-		CCNA_03814	0.25	+2.7
3,978,217	-		CCNA_03814	0.28	+0.7
3,978,260	+		CCNA_03814	0.36	-0.3
3,978,260	+		CCNA_03814	0.36	+0.3
3,978,269	-		CCNA_03814	0.38	+0.6
3,978,286	+		CCNA_03814	0.41	+2.6
3,978,301	+		CCNA_03814	0.44	-0.4
3,978,319	+		CCNA_03814	0.48	-1.3
3,978,319	-		CCNA_03814	0.48	+0.5
3,978,319	-		CCNA_03814	0.48	+0.5
3,978,327	-		CCNA_03814	0.49	+0.9
3,978,332	-		CCNA_03814	0.50	+1.7
3,978,387	+		CCNA_03814	0.61	+0.1
3,978,398	+		CCNA_03814	0.63	+0.5
3,978,404	+		CCNA_03814	0.64	-1.3
3,978,407	-		CCNA_03814	0.65	+1.5
3,978,409	+		CCNA_03814	0.65	-2.0
3,978,409	+		CCNA_03814	0.65	+1.1
3,978,409	+		CCNA_03814	0.65	+0.3
3,978,409	+		CCNA_03814	0.65	+0.4
3,978,417	-		CCNA_03814	0.66	+1.2
3,978,417	-		CCNA_03814	0.66	+0.2
3,978,417	-		CCNA_03814	0.66	+0.3
3,978,417	-		CCNA_03814	0.66	+1.2
3,978,417	-		CCNA_03814	0.66	+0.4
3,978,417	-		CCNA_03814	0.66	+1.8
3,978,461	+		CCNA_03814	0.75	+1.8
3,978,469	-		CCNA_03814	0.76	+0.6
3,978,469	-		CCNA_03814	0.76	+0.6
3,978,498	+		CCNA_03814	0.82	+1.1
3,978,506	-		CCNA_03814	0.84	-0.5
3,978,506	-		CCNA_03814	0.84	-1.1
3,978,506	-		CCNA_03814	0.84	+1.1
3,978,527	+		CCNA_03814	0.88	-2.4
3,978,620	-				+2.0
3,978,622	+				-0.1
3,978,630	-				+0.3
3,978,647	-				+3.8
3,978,659	-				+0.1
3,978,679	+				+0.3
3,978,696	+				-1.0
3,978,704	-				+1.0
3,978,734	-				-0.3
3,978,790	+		CCNA_03815	0.14	-1.5
3,978,797	-		CCNA_03815	0.15	+1.4
3,978,797	-		CCNA_03815	0.15	+0.7
3,978,798	-		CCNA_03815	0.15	+1.2
3,978,798	-		CCNA_03815	0.15	+4.0
3,978,846	+		CCNA_03815	0.20	+1.1
3,978,927	-		CCNA_03815	0.28	+3.0
3,978,958	-		CCNA_03815	0.32	+1.1
3,978,959	-		CCNA_03815	0.32	+1.3
3,978,970	+		CCNA_03815	0.33	-1.5
3,978,978	-		CCNA_03815	0.34	+1.4
3,978,978	-		CCNA_03815	0.34	+1.5
3,978,978	-		CCNA_03815	0.34	+1.4
3,978,988	+		CCNA_03815	0.35	-0.7
3,978,996	-		CCNA_03815	0.36	+1.7
3,978,996	-		CCNA_03815	0.36	+1.9
3,978,996	-		CCNA_03815	0.36	+1.4
3,979,037	-		CCNA_03815	0.40	+1.8
3,979,042	+		CCNA_03815	0.40	+0.3
3,979,050	-		CCNA_03815	0.41	+1.0
3,979,050	-		CCNA_03815	0.41	+1.3
3,979,050	-		CCNA_03815	0.41	+1.3
3,979,050	-		CCNA_03815	0.41	+1.2
3,979,056	-		CCNA_03815	0.42	-0.4
3,979,056	-		CCNA_03815	0.42	+1.3
3,979,072	-		CCNA_03815	0.43	+0.6
3,979,084	+		CCNA_03815	0.45	+1.3
3,979,099	+		CCNA_03815	0.46	-0.5
3,979,107	-				+1.3
3,979,107	-		CCNA_03815	0.47	+0.3
3,979,177	-		CCNA_03815	0.54	+0.1
3,979,181	-		CCNA_03815	0.55	+2.1
3,979,214	-		CCNA_03815	0.58	+0.5
3,979,219	-		CCNA_03815	0.59	+1.6
3,979,231	-		CCNA_03815	0.60	+1.5
3,979,260	+		CCNA_03815	0.63	+0.8
3,979,297	-		CCNA_03815	0.67	+0.7
3,979,303	-		CCNA_03815	0.67	+1.6
3,979,308	+		CCNA_03815	0.68	+1.7
3,979,313	+		CCNA_03815	0.68	-0.8
3,979,351	+		CCNA_03815	0.72	+0.7
3,979,354	-		CCNA_03815	0.73	+1.5
3,979,362	+		CCNA_03815	0.73	-1.5
3,979,365	-		CCNA_03815	0.74	+1.6
3,979,365	-		CCNA_03815	0.74	+1.0
3,979,365	-		CCNA_03815	0.74	+2.1
3,979,380	-		CCNA_03815	0.75	-1.0
3,979,428	-		CCNA_03815	0.80	+0.7
3,979,432	+		CCNA_03815	0.81	-1.3
3,979,432	+		CCNA_03815	0.81	-1.1
3,979,440	-		CCNA_03815	0.81	+2.4
3,979,440	-		CCNA_03815	0.81	+1.1
3,979,470	-		CCNA_03815	0.85	+1.5
3,979,505	-		CCNA_03815	0.88	+0.8
3,979,538	-				-0.9
3,979,580	+				-0.4
3,979,641	+				+1.3
3,979,642	+				-0.5
3,979,648	+				+0.3
3,979,649	-				+1.5
3,979,649	-				+1.6
3,979,650	-				+1.2
3,979,650	-				+1.7
3,979,650	-				+1.7
3,979,650	-				+1.6
3,979,655	-				+1.7
3,979,668	+				-2.1
3,979,668	+				-0.7
3,979,668	+				-0.3
3,979,676	-				+2.7
3,979,676	-				+2.0
3,979,676	-				+2.4
3,979,677	-				+2.8
3,979,685	-				+2.2
3,979,710	-				+2.1
3,979,809	+				+1.7
3,979,865	+				-0.2
3,979,867	-				+2.5
3,979,875	-				+2.1
3,979,875	-				+2.1
3,980,011	-		CCNA_03816	0.15	+2.3
3,980,025	-		CCNA_03816	0.16	+0.9
3,980,057	+		CCNA_03816	0.17	-0.3
3,980,065	-		CCNA_03816	0.18	+2.3
3,980,085	-		CCNA_03816	0.19	+1.5
3,980,087	-		CCNA_03816	0.19	+1.8
3,980,098	-		CCNA_03816	0.19	+0.1
3,980,139	+		CCNA_03816	0.21	-0.5
3,980,147	-		CCNA_03816	0.22	-0.5
3,980,162	-		CCNA_03816	0.22	+1.4
3,980,172	+		CCNA_03816	0.23	+0.9
3,980,182	-		CCNA_03816	0.23	+1.7
3,980,203	-		CCNA_03816	0.24	+2.0
3,980,244	-		CCNA_03816	0.26	+0.7
3,980,261	+		CCNA_03816	0.27	-2.8
3,980,261	+		CCNA_03816	0.27	-1.8
3,980,339	+		CCNA_03816	0.31	+0.3
3,980,406	-		CCNA_03816	0.34	+1.7
3,980,430	-		CCNA_03816	0.35	+0.8
3,980,433	+		CCNA_03816	0.35	+0.9
3,980,462	-		CCNA_03816	0.37	+1.4
3,980,468	-		CCNA_03816	0.37	+1.5
3,980,513	+		CCNA_03816	0.39	-1.4
3,980,521	-		CCNA_03816	0.39	+2.1
3,980,554	+		CCNA_03816	0.41	+0.7
3,980,572	+		CCNA_03816	0.42	+1.8
3,980,591	-		CCNA_03816	0.43	+0.8
3,980,591	-		CCNA_03816	0.43	-0.3
3,980,591	-		CCNA_03816	0.43	+0.9
3,980,607	+		CCNA_03816	0.43	+1.7
3,980,615	-		CCNA_03816	0.44	+1.1