Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03667

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,828,344	+		CCNA_03665	0.78	-1.2
3,828,352	-		CCNA_03665	0.78	-2.0
3,828,502	+		CCNA_03665	0.83	-1.7
3,828,523	+		CCNA_03665	0.83	-0.1
3,828,531	-		CCNA_03665	0.84	-1.2
3,828,546	-		CCNA_03665	0.84	-2.3
3,828,572	+		CCNA_03665	0.85	-2.4
3,828,585	+		CCNA_03665	0.85	-2.9
3,828,619	-		CCNA_03665	0.86	+0.3
3,828,727	+		CCNA_03665	0.90	-1.8
3,828,727	+		CCNA_03665	0.90	-3.6
3,828,727	+		CCNA_03665	0.90	-1.3
3,828,737	+		CCNA_03665	0.90	-1.1
3,828,737	+		CCNA_03665	0.90	-2.8
3,828,745	-				-1.8
3,828,745	-				-0.9
3,828,784	+				-2.1
3,828,792	-				-1.1
3,828,802	-				-2.0
3,828,845	+				-0.9
3,828,845	+				-0.5
3,828,855	+				-0.5
3,828,855	+				-0.9
3,828,855	+				-1.8
3,828,855	+				+1.3
3,828,863	-				-3.7
3,828,863	-				+2.3
3,828,874	+				-0.9
3,828,881	+				-1.7
3,828,887	+				-2.1
3,828,887	+				-1.4
3,828,945	-				-2.3
3,828,960	+				+0.5
3,829,026	+				-0.8
3,829,036	+				+0.3
3,829,041	+				+0.4
3,829,041	+				+1.5
3,829,041	+				+1.5
3,829,049	-				-0.9
3,829,052	+				+2.1
3,829,057	+				-0.1
3,829,065	+				-0.1
3,829,065	-				+2.3
3,829,065	-				-2.3
3,829,073	-				+1.1
3,829,124	-		CCNA_03666	0.13	-0.6
3,829,184	-		CCNA_03666	0.46	+0.4
3,829,236	+		CCNA_03666	0.74	-1.2
3,829,244	-		CCNA_03666	0.78	-2.5
3,829,254	-		CCNA_03666	0.83	-0.7
3,829,268	+				-3.4
3,829,268	+				-0.5
3,829,271	-				+1.3
3,829,276	-				+2.3
3,829,276	-				-0.3
3,829,278	+				+0.9
3,829,285	+				-0.8
3,829,286	-				-0.9
3,829,305	-				-0.9
3,829,311	+				-1.8
3,829,360	+		CCNA_03667	0.17	-1.5
3,829,360	+		CCNA_03667	0.17	+0.3
3,829,368	-		CCNA_03667	0.19	-1.6
3,829,368	-		CCNA_03667	0.19	-1.6
3,829,368	-		CCNA_03667	0.19	-0.1
3,829,368	-		CCNA_03667	0.19	+2.3
3,829,459	+		CCNA_03667	0.45	-0.3
3,829,477	+		CCNA_03667	0.50	-2.7
3,829,477	+		CCNA_03667	0.50	-4.9
3,829,495	+		CCNA_03667	0.55	-3.6
3,829,500	+		CCNA_03667	0.56	-2.6
3,829,508	-		CCNA_03667	0.58	-1.2
3,829,545	+		CCNA_03667	0.69	-0.6
3,829,557	+		CCNA_03667	0.72	-3.2
3,829,570	+		CCNA_03667	0.76	-3.1
3,829,575	+		CCNA_03667	0.77	-2.3
3,829,578	-		CCNA_03667	0.78	-0.8
3,829,578	-		CCNA_03667	0.78	-2.3
3,829,612	+		CCNA_03667	0.87	-1.2
3,829,615	-		CCNA_03667	0.88	-0.5
3,829,658	+				+2.5
3,829,677	+				+1.4
3,829,738	+				-0.5
3,829,752	-				+1.3
3,829,796	-				+2.0
3,829,801	+				-1.5
3,829,820	-		CCNA_03668	0.16	+0.1
3,829,822	+		CCNA_03668	0.17	-1.3
3,829,837	+		CCNA_03668	0.25	+1.3
3,829,837	+		CCNA_03668	0.25	-0.3
3,829,837	+		CCNA_03668	0.25	-2.3
3,829,837	+		CCNA_03668	0.25	+0.5
3,829,837	+		CCNA_03668	0.25	+0.3
3,829,837	+		CCNA_03668	0.25	-0.3
3,829,837	+		CCNA_03668	0.25	-1.5
3,829,845	-		CCNA_03668	0.30	-0.7
3,829,845	-		CCNA_03668	0.30	-1.2
3,829,845	-		CCNA_03668	0.30	+0.9
3,829,845	-		CCNA_03668	0.30	+1.3
3,829,845	-		CCNA_03668	0.30	+0.3
3,829,864	+		CCNA_03668	0.40	-2.2
3,829,892	-		CCNA_03668	0.54	-1.7
3,829,903	+		CCNA_03668	0.60	-0.0
3,829,911	-		CCNA_03668	0.65	-1.0
3,829,911	-		CCNA_03668	0.65	+1.3
3,829,970	-				-1.6
3,830,003	-				-0.3
3,830,040	+				-0.3
3,830,040	+				-0.3
3,830,040	+				+0.6
3,830,040	+				-0.7
3,830,040	+				+0.7
3,830,040	+				+0.1
3,830,048	-				+0.7
3,830,048	-				+1.3
3,830,071	-				+0.5
3,830,118	+				+3.0
3,830,142	+				+2.8
3,830,143	-				-0.9
3,830,152	+				+1.3
3,830,162	+				+2.0
3,830,162	+				+2.7
3,830,162	+				+2.0
3,830,162	+				+2.2
3,830,171	-				-0.0
3,830,184	+				+1.9
3,830,189	+				+2.2
3,830,272	-				+1.3
3,830,272	-				+1.6
3,830,272	-				+1.4
3,830,274	+				+0.8
3,830,274	+				-0.9
3,830,274	+				-1.5
3,830,274	+				+2.7
3,830,274	+				-0.4
3,830,274	+				-0.5
3,830,282	-				-0.7
3,830,282	-				-1.0
3,830,282	-				-2.0
3,830,299	-				+0.4
3,830,312	-				-0.9
3,830,334	+				+1.3
3,830,334	+				+0.8
3,830,334	+				-0.0
3,830,334	+				-2.8
3,830,334	+				-0.3
3,830,334	+				+0.5
3,830,342	-				+0.3
3,830,342	-				-3.1
3,830,342	-				-0.8
3,830,342	-				+0.1
3,830,342	-				-1.2
3,830,342	-				+1.2
3,830,342	-				+1.6
3,830,342	-				-3.2
3,830,342	-				-0.3
3,830,356	-				+0.4
3,830,393	-				-2.6
3,830,443	+		CCNA_03669	0.16	+0.3
3,830,474	-		CCNA_03669	0.25	+0.4
3,830,524	+		CCNA_03669	0.39	-2.4
3,830,532	-		CCNA_03669	0.41	+1.3
3,830,593	+		CCNA_03669	0.59	+0.5