Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03665

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,824,825	+				-1.1
3,824,840	-				-1.4
3,824,932	+				-0.1
3,824,932	+				-1.5
3,824,951	+				+0.2
3,824,951	+				+0.5
3,824,956	+				+1.7
3,824,959	-				-1.3
3,824,975	+				+1.3
3,824,975	+				-0.4
3,825,010	-				-1.5
3,825,010	-				-1.1
3,825,010	-				-1.1
3,825,010	-				-0.3
3,825,838	-				-1.2
3,825,865	+				+1.9
3,825,865	+				-0.1
3,825,873	-				-0.1
3,825,911	-				-0.9
3,825,961	-				-1.5
3,825,966	+				-1.2
3,825,974	-				-1.7
3,825,995	-				-0.3
3,826,002	+				-1.7
3,826,002	+				-1.3
3,826,002	+				-2.1
3,826,010	-				-1.1
3,826,050	-				-1.9
3,826,067	-				-2.3
3,826,083	+				-1.4
3,826,083	+				-1.9
3,826,096	-				-2.1
3,826,129	-				+1.3
3,826,134	+				-2.5
3,826,134	+				-2.7
3,826,134	+				-2.8
3,826,134	+				+1.3
3,826,134	+				-0.3
3,826,142	-				-1.4
3,826,142	-				-0.1
3,826,142	-				-2.3
3,826,142	-				-1.2
3,826,159	-		CCNA_03665	0.10	+0.7
3,826,159	-		CCNA_03665	0.10	-2.1
3,826,178	-		CCNA_03665	0.11	+1.3
3,826,180	+		CCNA_03665	0.11	-0.5
3,826,180	+		CCNA_03665	0.11	-0.8
3,826,180	+		CCNA_03665	0.11	-2.4
3,826,180	+		CCNA_03665	0.11	-2.4
3,826,180	+		CCNA_03665	0.11	-1.9
3,826,180	+		CCNA_03665	0.11	-2.1
3,826,180	+		CCNA_03665	0.11	-2.0
3,826,188	-		CCNA_03665	0.11	-1.3
3,826,188	-		CCNA_03665	0.11	-2.1
3,826,188	-		CCNA_03665	0.11	-1.3
3,826,188	-		CCNA_03665	0.11	+0.3
3,826,188	-		CCNA_03665	0.11	+0.3
3,826,188	-		CCNA_03665	0.11	+1.3
3,826,188	-		CCNA_03665	0.11	-2.0
3,826,188	-		CCNA_03665	0.11	+0.3
3,826,188	-		CCNA_03665	0.11	-0.1
3,826,188	-		CCNA_03665	0.11	-0.1
3,826,188	-		CCNA_03665	0.11	-0.8
3,826,214	+		CCNA_03665	0.12	-2.4
3,826,229	-		CCNA_03665	0.12	-4.5
3,826,272	-		CCNA_03665	0.14	-1.3
3,826,274	+		CCNA_03665	0.14	+0.3
3,826,282	-		CCNA_03665	0.14	-0.3
3,826,282	-		CCNA_03665	0.14	-0.3
3,826,282	-		CCNA_03665	0.14	-0.9
3,826,283	+		CCNA_03665	0.14	-0.1
3,826,284	-		CCNA_03665	0.14	-2.4
3,826,288	-		CCNA_03665	0.14	-1.7
3,826,311	-		CCNA_03665	0.15	-1.5
3,826,340	+		CCNA_03665	0.16	+0.7
3,826,340	+		CCNA_03665	0.16	-1.1
3,826,350	+		CCNA_03665	0.16	-1.6
3,826,352	+		CCNA_03665	0.16	-1.6
3,826,352	+		CCNA_03665	0.16	-2.0
3,826,352	+		CCNA_03665	0.16	-1.2
3,826,386	+		CCNA_03665	0.17	-1.9
3,826,386	+		CCNA_03665	0.17	-1.3
3,826,386	+		CCNA_03665	0.17	-2.3
3,826,386	+		CCNA_03665	0.17	+0.9
3,826,386	+		CCNA_03665	0.17	-3.5
3,826,386	+		CCNA_03665	0.17	-0.5
3,826,393	-		CCNA_03665	0.18	-0.3
3,826,394	-		CCNA_03665	0.18	-2.3
3,826,394	-		CCNA_03665	0.18	+1.3
3,826,394	-		CCNA_03665	0.18	+0.1
3,826,394	-		CCNA_03665	0.18	-1.9
3,826,431	-		CCNA_03665	0.19	+0.3
3,826,437	+		CCNA_03665	0.19	-1.8
3,826,437	+		CCNA_03665	0.19	-4.9
3,826,438	-		CCNA_03665	0.19	-0.3
3,826,438	-		CCNA_03665	0.19	-2.1
3,826,443	-		CCNA_03665	0.19	-1.7
3,826,445	+		CCNA_03665	0.19	+0.3
3,826,445	-		CCNA_03665	0.19	-1.9
3,826,448	-		CCNA_03665	0.19	-1.1
3,826,453	-		CCNA_03665	0.19	-0.1
3,826,487	-		CCNA_03665	0.20	-1.5
3,826,489	+		CCNA_03665	0.21	-2.5
3,826,500	+		CCNA_03665	0.21	-2.1
3,826,512	+		CCNA_03665	0.21	+0.9
3,826,512	+		CCNA_03665	0.21	-3.6
3,826,512	+		CCNA_03665	0.21	-3.3
3,826,512	+		CCNA_03665	0.21	-2.2
3,826,524	+		CCNA_03665	0.22	-3.6
3,826,529	+		CCNA_03665	0.22	+1.3
3,826,529	+		CCNA_03665	0.22	-1.6
3,826,532	-		CCNA_03665	0.22	-1.5
3,826,534	+		CCNA_03665	0.22	+0.3
3,826,537	-		CCNA_03665	0.22	-2.4
3,826,575	+		CCNA_03665	0.23	-0.6
3,826,590	-		CCNA_03665	0.24	+0.3
3,826,592	+		CCNA_03665	0.24	-2.0
3,826,595	-		CCNA_03665	0.24	-0.7
3,826,597	+		CCNA_03665	0.24	-1.1
3,826,600	-		CCNA_03665	0.24	-1.4
3,826,602	+		CCNA_03665	0.24	-2.6
3,826,605	-		CCNA_03665	0.24	+0.7
3,826,610	-		CCNA_03665	0.24	-1.8
3,826,610	-		CCNA_03665	0.24	-1.1
3,826,610	-		CCNA_03665	0.24	-1.9
3,826,610	-		CCNA_03665	0.24	-1.2
3,826,610	-		CCNA_03665	0.24	-0.1
3,826,647	+		CCNA_03665	0.25	-1.9
3,826,647	+		CCNA_03665	0.25	-1.8
3,826,668	+		CCNA_03665	0.26	-0.3
3,826,668	+		CCNA_03665	0.26	-2.5
3,826,676	-		CCNA_03665	0.26	+0.3
3,826,676	-		CCNA_03665	0.26	-1.7
3,826,676	-		CCNA_03665	0.26	-0.9
3,826,676	-		CCNA_03665	0.26	-3.6
3,826,690	+		CCNA_03665	0.27	-3.6
3,826,709	+		CCNA_03665	0.27	-1.7
3,826,714	+		CCNA_03665	0.27	-3.7
3,826,714	+		CCNA_03665	0.27	-1.6
3,826,714	+		CCNA_03665	0.27	-1.3
3,826,714	+		CCNA_03665	0.27	-1.2
3,826,714	+		CCNA_03665	0.27	-3.1
3,826,722	-		CCNA_03665	0.28	-2.7
3,826,737	-		CCNA_03665	0.28	-3.3
3,826,742	+		CCNA_03665	0.28	-2.7
3,826,778	+		CCNA_03665	0.29	+2.3
3,826,786	-		CCNA_03665	0.30	-0.9
3,826,844	-		CCNA_03665	0.31	-1.6
3,826,849	-		CCNA_03665	0.32	-2.4
3,826,883	+		CCNA_03665	0.33	-4.0
3,826,927	-		CCNA_03665	0.34	-2.2
3,826,983	-		CCNA_03665	0.36	+0.3
3,826,988	-		CCNA_03665	0.36	-1.1
3,827,053	+		CCNA_03665	0.38	-3.1
3,827,128	-		CCNA_03665	0.40	-2.6
3,827,129	-		CCNA_03665	0.40	-2.5
3,827,135	-		CCNA_03665	0.40	-0.3
3,827,137	+		CCNA_03665	0.41	-1.3
3,827,156	-		CCNA_03665	0.41	-3.3
3,827,199	-		CCNA_03665	0.42	-1.7
3,827,231	+		CCNA_03665	0.43	-3.6
3,827,231	+		CCNA_03665	0.43	-2.6
3,827,231	+		CCNA_03665	0.43	+0.3
3,827,231	+		CCNA_03665	0.43	-2.7
3,827,231	+		CCNA_03665	0.43	-2.5
3,827,231	+		CCNA_03665	0.43	-1.3
3,827,231	+		CCNA_03665	0.43	-2.7
3,827,231	+		CCNA_03665	0.43	-0.9
3,827,231	+		CCNA_03665	0.43	-4.1
3,827,231	+		CCNA_03665	0.43	-2.9
3,827,231	+		CCNA_03665	0.43	+2.3
3,827,231	+		CCNA_03665	0.43	-0.9
3,827,231	+		CCNA_03665	0.43	-2.3
3,827,239	-		CCNA_03665	0.44	-1.1
3,827,239	-		CCNA_03665	0.44	-2.0
3,827,239	-		CCNA_03665	0.44	-0.3
3,827,239	-		CCNA_03665	0.44	-2.3
3,827,239	-		CCNA_03665	0.44	-2.5
3,827,239	-		CCNA_03665	0.44	-1.4
3,827,239	-		CCNA_03665	0.44	-2.4
3,827,239	-		CCNA_03665	0.44	-1.7
3,827,239	-		CCNA_03665	0.44	-2.1
3,827,239	-		CCNA_03665	0.44	-1.1
3,827,239	-		CCNA_03665	0.44	+1.3
3,827,239	-		CCNA_03665	0.44	+0.3
3,827,274	+		CCNA_03665	0.45	-3.4
3,827,274	+		CCNA_03665	0.45	-3.6
3,827,274	+		CCNA_03665	0.45	-3.0
3,827,274	+		CCNA_03665	0.45	-0.1
3,827,274	+		CCNA_03665	0.45	-2.7
3,827,276	-		CCNA_03665	0.45	-1.3
3,827,321	+		CCNA_03665	0.46	-3.6
3,827,331	+		CCNA_03665	0.47	-0.9
3,827,369	+		CCNA_03665	0.48	-2.0
3,827,377	-		CCNA_03665	0.48	-2.1
3,827,408	+		CCNA_03665	0.49	-1.1
3,827,425	-		CCNA_03665	0.49	+0.7
3,827,426	-		CCNA_03665	0.49	-1.3
3,827,486	-		CCNA_03665	0.51	-0.7
3,827,495	+		CCNA_03665	0.52	-1.8
3,827,503	-		CCNA_03665	0.52	-1.3
3,827,515	-		CCNA_03665	0.52	-2.4
3,827,597	+		CCNA_03665	0.55	-2.6
3,827,636	+		CCNA_03665	0.56	-3.2
3,827,636	+		CCNA_03665	0.56	-2.4
3,827,641	+		CCNA_03665	0.56	-2.1
3,827,641	+		CCNA_03665	0.56	-3.5
3,827,641	+		CCNA_03665	0.56	-2.2
3,827,641	+		CCNA_03665	0.56	-0.9
3,827,661	-		CCNA_03665	0.57	-1.3
3,827,661	-		CCNA_03665	0.57	-2.4
3,827,670	-		CCNA_03665	0.57	-2.7
3,827,681	+		CCNA_03665	0.57	-0.5
3,827,681	+		CCNA_03665	0.57	+0.1
3,827,689	-		CCNA_03665	0.58	-0.1
3,827,768	+		CCNA_03665	0.60	-1.3
3,827,773	+		CCNA_03665	0.60	-3.0
3,827,773	+		CCNA_03665	0.60	-0.1
3,827,773	+		CCNA_03665	0.60	-2.3
3,827,776	-		CCNA_03665	0.60	-2.9
3,827,778	+		CCNA_03665	0.60	-1.2
3,827,780	+		CCNA_03665	0.60	-1.6
3,827,785	+		CCNA_03665	0.61	-1.5
3,827,788	-		CCNA_03665	0.61	-0.9
3,827,788	-		CCNA_03665	0.61	-0.9
3,827,788	-		CCNA_03665	0.61	-0.9
3,827,788	-		CCNA_03665	0.61	-0.4
3,827,800	+		CCNA_03665	0.61	-2.5
3,827,865	-		CCNA_03665	0.63	+1.3
3,827,898	+		CCNA_03665	0.64	-3.7
3,827,904	+		CCNA_03665	0.64	-0.3
3,827,906	-		CCNA_03665	0.64	-2.5
3,827,925	+		CCNA_03665	0.65	-2.1
3,827,925	+		CCNA_03665	0.65	-1.3
3,827,925	+		CCNA_03665	0.65	-1.8
3,827,930	+		CCNA_03665	0.65	-1.6
3,827,933	-		CCNA_03665	0.65	+2.3
3,827,933	-		CCNA_03665	0.65	-4.4
3,827,943	-		CCNA_03665	0.65	-2.2
3,827,987	+		CCNA_03665	0.67	-1.9
3,828,005	-		CCNA_03665	0.67	+0.3
3,828,040	-		CCNA_03665	0.68	-0.3
3,828,051	+		CCNA_03665	0.69	-3.8
3,828,059	-		CCNA_03665	0.69	-1.1
3,828,059	-		CCNA_03665	0.69	-3.8
3,828,059	-		CCNA_03665	0.69	-3.1
3,828,061	+		CCNA_03665	0.69	-2.1
3,828,078	+		CCNA_03665	0.70	-2.9
3,828,169	+		CCNA_03665	0.72	-0.7
3,828,242	+		CCNA_03665	0.75	-0.9
3,828,242	+		CCNA_03665	0.75	-3.2
3,828,250	-		CCNA_03665	0.75	-1.2
3,828,260	+		CCNA_03665	0.75	-2.9
3,828,283	+		CCNA_03665	0.76	-2.5
3,828,344	+		CCNA_03665	0.78	-1.2
3,828,352	-		CCNA_03665	0.78	-2.0
3,828,502	+		CCNA_03665	0.83	-1.7
3,828,523	+		CCNA_03665	0.83	-0.1
3,828,531	-		CCNA_03665	0.84	-1.2
3,828,546	-		CCNA_03665	0.84	-2.3
3,828,572	+		CCNA_03665	0.85	-2.4
3,828,585	+		CCNA_03665	0.85	-2.9
3,828,619	-		CCNA_03665	0.86	+0.3
3,828,727	+		CCNA_03665	0.90	-1.8
3,828,727	+		CCNA_03665	0.90	-3.6
3,828,727	+		CCNA_03665	0.90	-1.3
3,828,737	+		CCNA_03665	0.90	-1.1
3,828,737	+		CCNA_03665	0.90	-2.8
3,828,745	-				-1.8
3,828,745	-				-0.9
3,828,784	+				-2.1
3,828,792	-				-1.1
3,828,802	-				-2.0
3,828,845	+				-0.9
3,828,845	+				-0.5
3,828,855	+				-0.5
3,828,855	+				-0.9
3,828,855	+				-1.8
3,828,855	+				+1.3
3,828,863	-				-3.7
3,828,863	-				+2.3
3,828,874	+				-0.9
3,828,881	+				-1.7
3,828,887	+				-2.1
3,828,887	+				-1.4
3,828,945	-				-2.3
3,828,960	+				+0.5
3,829,026	+				-0.8
3,829,036	+				+0.3
3,829,041	+				+0.4
3,829,041	+				+1.5
3,829,041	+				+1.5
3,829,049	-				-0.9
3,829,052	+				+2.1
3,829,057	+				-0.1
3,829,065	+				-0.1
3,829,065	-				+2.3
3,829,065	-				-2.3
3,829,073	-				+1.1
3,829,124	-		CCNA_03666	0.13	-0.6
3,829,184	-		CCNA_03666	0.46	+0.4
3,829,236	+		CCNA_03666	0.74	-1.2
3,829,244	-		CCNA_03666	0.78	-2.5
3,829,254	-		CCNA_03666	0.83	-0.7
3,829,268	+				-3.4
3,829,268	+				-0.5
3,829,271	-				+1.3
3,829,276	-				+2.3
3,829,276	-				-0.3
3,829,278	+				+0.9
3,829,285	+				-0.8
3,829,286	-				-0.9
3,829,305	-				-0.9
3,829,311	+				-1.8
3,829,360	+		CCNA_03667	0.17	-1.5
3,829,360	+		CCNA_03667	0.17	+0.3
3,829,368	-		CCNA_03667	0.19	-1.6
3,829,368	-		CCNA_03667	0.19	-1.6
3,829,368	-		CCNA_03667	0.19	-0.1
3,829,368	-		CCNA_03667	0.19	+2.3
3,829,459	+		CCNA_03667	0.45	-0.3
3,829,477	+		CCNA_03667	0.50	-2.7
3,829,477	+		CCNA_03667	0.50	-4.9
3,829,495	+		CCNA_03667	0.55	-3.6
3,829,500	+		CCNA_03667	0.56	-2.6
3,829,508	-		CCNA_03667	0.58	-1.2
3,829,545	+		CCNA_03667	0.69	-0.6
3,829,557	+		CCNA_03667	0.72	-3.2
3,829,570	+		CCNA_03667	0.76	-3.1
3,829,575	+		CCNA_03667	0.77	-2.3
3,829,578	-		CCNA_03667	0.78	-0.8
3,829,578	-		CCNA_03667	0.78	-2.3
3,829,612	+		CCNA_03667	0.87	-1.2
3,829,615	-		CCNA_03667	0.88	-0.5
3,829,658	+				+2.5
3,829,677	+				+1.4
3,829,738	+				-0.5
3,829,752	-				+1.3
3,829,796	-				+2.0
3,829,801	+				-1.5
3,829,820	-		CCNA_03668	0.16	+0.1
3,829,822	+		CCNA_03668	0.17	-1.3
3,829,837	+		CCNA_03668	0.25	+1.3
3,829,837	+		CCNA_03668	0.25	-0.3
3,829,837	+		CCNA_03668	0.25	-2.3
3,829,837	+		CCNA_03668	0.25	+0.5
3,829,837	+		CCNA_03668	0.25	+0.3
3,829,837	+		CCNA_03668	0.25	-0.3
3,829,837	+		CCNA_03668	0.25	-1.5
3,829,845	-		CCNA_03668	0.30	-0.7
3,829,845	-		CCNA_03668	0.30	-1.2
3,829,845	-		CCNA_03668	0.30	+0.9
3,829,845	-		CCNA_03668	0.30	+1.3
3,829,845	-		CCNA_03668	0.30	+0.3
3,829,864	+		CCNA_03668	0.40	-2.2
3,829,892	-		CCNA_03668	0.54	-1.7
3,829,903	+		CCNA_03668	0.60	-0.0
3,829,911	-		CCNA_03668	0.65	-1.0
3,829,911	-		CCNA_03668	0.65	+1.3
3,829,970	-				-1.6
3,830,003	-				-0.3
3,830,040	+				-0.3
3,830,040	+				-0.3
3,830,040	+				+0.6
3,830,040	+				-0.7
3,830,040	+				+0.7
3,830,040	+				+0.1
3,830,048	-				+0.7
3,830,048	-				+1.3