Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03538

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,695,151	+		CCNA_03536	0.11	-2.2
3,695,151	+		CCNA_03536	0.11	+0.2
3,695,151	+		CCNA_03536	0.11	+1.0
3,695,159	-		CCNA_03536	0.12	-0.4
3,695,242	-		CCNA_03536	0.25	-0.4
3,695,250	-		CCNA_03536	0.26	-1.7
3,695,250	-		CCNA_03536	0.26	-2.4
3,695,267	+		CCNA_03536	0.29	+0.4
3,695,273	+		CCNA_03536	0.30	+1.4
3,695,297	-		CCNA_03536	0.33	+0.0
3,695,321	+		CCNA_03536	0.37	-1.9
3,695,332	-		CCNA_03536	0.38	-0.2
3,695,348	+		CCNA_03536	0.41	+2.4
3,695,368	+		CCNA_03536	0.44	-1.2
3,695,388	-		CCNA_03536	0.47	-1.5
3,695,403	-		CCNA_03536	0.49	+0.0
3,695,408	+		CCNA_03536	0.50	-0.6
3,695,413	+		CCNA_03536	0.51	+1.3
3,695,441	+		CCNA_03536	0.55	+1.0
3,695,446	+		CCNA_03536	0.56	-1.8
3,695,454	-		CCNA_03536	0.57	-1.7
3,695,454	-		CCNA_03536	0.57	-0.8
3,695,515	-		CCNA_03536	0.66	-2.0
3,695,525	+		CCNA_03536	0.68	+1.8
3,695,601	-		CCNA_03536	0.79	+0.4
3,695,601	-		CCNA_03536	0.79	-0.2
3,695,611	-		CCNA_03536	0.81	-0.8
3,695,611	-		CCNA_03536	0.81	-2.4
3,695,665	+		CCNA_03536	0.89	-0.3
3,695,679	-				+0.0
3,695,698	-				-1.3
3,695,727	-				-0.2
3,695,815	-				-1.5
3,695,838	+		CCNA_03537	0.16	+0.2
3,695,855	-		CCNA_03537	0.21	+0.8
3,695,860	+		CCNA_03537	0.22	+0.0
3,695,887	+		CCNA_03537	0.30	-2.6
3,695,895	+		CCNA_03537	0.32	-1.5
3,695,951	+		CCNA_03537	0.48	-0.8
3,695,951	+		CCNA_03537	0.48	+2.4
3,695,984	+		CCNA_03537	0.57	+0.4
3,696,046	+		CCNA_03537	0.75	-0.2
3,696,046	+		CCNA_03537	0.75	+1.4
3,696,073	-		CCNA_03537	0.82	+1.4
3,696,088	-		CCNA_03537	0.86	+2.4
3,696,098	-		CCNA_03537	0.89	+1.4
3,696,133	-				-3.4
3,696,178	-				-1.3
3,696,233	-				+0.8
3,696,238	-		CCNA_03538	0.10	+2.4
3,696,279	-		CCNA_03538	0.15	-0.9
3,696,279	-		CCNA_03538	0.15	-2.1
3,696,279	-		CCNA_03538	0.15	-2.7
3,696,279	-		CCNA_03538	0.15	-0.5
3,696,293	-		CCNA_03538	0.16	-2.2
3,696,302	-		CCNA_03538	0.17	+0.0
3,696,340	+		CCNA_03538	0.22	-0.2
3,696,348	-		CCNA_03538	0.23	-0.5
3,696,370	+		CCNA_03538	0.25	-2.7
3,696,400	+		CCNA_03538	0.29	+0.8
3,696,408	+		CCNA_03538	0.30	-1.0
3,696,408	+		CCNA_03538	0.30	-0.7
3,696,408	+		CCNA_03538	0.30	-0.8
3,696,408	+		CCNA_03538	0.30	+1.3
3,696,408	+		CCNA_03538	0.30	+0.0
3,696,408	+		CCNA_03538	0.30	+1.3
3,696,408	+		CCNA_03538	0.30	+0.8
3,696,408	+		CCNA_03538	0.30	-1.2
3,696,416	-		CCNA_03538	0.31	-1.1
3,696,416	-		CCNA_03538	0.31	+0.9
3,696,416	-		CCNA_03538	0.31	-1.6
3,696,416	-		CCNA_03538	0.31	-1.7
3,696,416	-		CCNA_03538	0.31	+0.8
3,696,416	-		CCNA_03538	0.31	-1.0
3,696,416	-		CCNA_03538	0.31	-1.6
3,696,416	-		CCNA_03538	0.31	+0.0
3,696,416	-		CCNA_03538	0.31	+0.4
3,696,416	-		CCNA_03538	0.31	+0.3
3,696,422	-		CCNA_03538	0.31	-2.1
3,696,474	+		CCNA_03538	0.37	-2.3
3,696,489	+		CCNA_03538	0.39	-1.1
3,696,516	-		CCNA_03538	0.42	-1.6
3,696,524	+		CCNA_03538	0.43	-0.5
3,696,593	-		CCNA_03538	0.51	-2.4
3,696,602	+		CCNA_03538	0.52	-0.2
3,696,607	+		CCNA_03538	0.53	-2.1
3,696,636	+		CCNA_03538	0.56	+0.8
3,696,644	-		CCNA_03538	0.57	-0.5
3,696,663	-		CCNA_03538	0.59	-0.2
3,696,668	-		CCNA_03538	0.60	-1.9
3,696,761	+		CCNA_03538	0.70	-2.2
3,696,785	+		CCNA_03538	0.73	-2.0
3,696,932	-		CCNA_03538	0.90	-1.6
3,696,939	-				-1.1
3,696,959	+				-0.8
3,696,973	-				+0.4
3,696,999	-				+0.4
3,697,003	-				-0.1
3,697,027	+				-2.0
3,697,027	+				+0.4
3,697,027	+				+1.7
3,697,027	+				+0.0
3,697,027	+				+0.4
3,697,027	+				+0.0
3,697,027	+				-1.1
3,697,027	+				-1.6
3,697,027	+				-0.6
3,697,035	-				-0.6
3,697,035	-				+0.8
3,697,035	-				-1.1
3,697,035	-				+0.3
3,697,052	+				-0.6
3,697,123	-		CCNA_03539	0.20	-0.3
3,697,150	+		CCNA_03539	0.28	-0.8
3,697,159	-		CCNA_03539	0.30	-2.2
3,697,159	-		CCNA_03539	0.30	+0.8
3,697,176	+		CCNA_03539	0.35	-1.2
3,697,181	+		CCNA_03539	0.36	-2.6
3,697,181	+		CCNA_03539	0.36	+1.7
3,697,181	+		CCNA_03539	0.36	-1.1
3,697,181	+		CCNA_03539	0.36	-1.6
3,697,184	-		CCNA_03539	0.37	-1.7
3,697,189	-		CCNA_03539	0.39	-0.6
3,697,196	+		CCNA_03539	0.40	-0.2
3,697,199	-		CCNA_03539	0.41	-1.6
3,697,204	-		CCNA_03539	0.43	-1.6
3,697,275	+		CCNA_03539	0.62	+0.4
3,697,283	+		CCNA_03539	0.64	-2.3
3,697,286	-		CCNA_03539	0.65	+1.4
3,697,306	-		CCNA_03539	0.71	-0.2
3,697,312	+		CCNA_03539	0.72	-0.4
3,697,319	+		CCNA_03539	0.74	+0.8
3,697,331	-		CCNA_03539	0.78	-0.1
3,697,357	+		CCNA_03539	0.85	-0.8
3,697,365	-		CCNA_03539	0.87	-1.0
3,697,375	+				+0.6
3,697,383	-				-2.4
3,697,383	-				-0.2
3,697,424	+				-0.6
3,697,426	+				+0.6
3,697,457	+				-0.5
3,697,457	+				+0.8
3,697,457	+				+1.7
3,697,465	-				-1.6
3,697,465	-				-1.1
3,697,465	-				+1.4
3,697,476	-		CCNA_03540	0.10	-1.5
3,697,479	-		CCNA_03540	0.11	-1.5
3,697,481	+		CCNA_03540	0.11	+1.3
3,697,488	-		CCNA_03540	0.12	+0.4
3,697,489	-		CCNA_03540	0.12	+0.6
3,697,501	+		CCNA_03540	0.14	+0.0
3,697,501	+		CCNA_03540	0.14	+0.4
3,697,518	+		CCNA_03540	0.17	+0.4
3,697,582	-		CCNA_03540	0.26	-0.4
3,697,603	+		CCNA_03540	0.30	-1.4
3,697,611	-		CCNA_03540	0.31	-1.1
3,697,611	-		CCNA_03540	0.31	-2.7
3,697,611	-		CCNA_03540	0.31	+1.4
3,697,638	-		CCNA_03540	0.35	-0.8
3,697,638	-		CCNA_03540	0.35	+0.0
3,697,716	-		CCNA_03540	0.47	+0.0
3,697,722	-		CCNA_03540	0.48	-1.3
3,697,726	-		CCNA_03540	0.48	+3.1
3,697,747	+		CCNA_03540	0.52	-0.4
3,697,755	+		CCNA_03540	0.53	-1.2
3,697,755	-		CCNA_03540	0.53	-0.8
3,697,757	+		CCNA_03540	0.53	+0.8
3,697,757	+		CCNA_03540	0.53	+0.4
3,697,757	-		CCNA_03540	0.53	-1.7
3,697,765	-		CCNA_03540	0.54	-1.2
3,697,765	-		CCNA_03540	0.54	-0.4
3,697,784	+		CCNA_03540	0.57	+0.8
3,697,789	+		CCNA_03540	0.58	-0.8
3,697,809	-		CCNA_03540	0.61	-0.6
3,697,830	+		CCNA_03540	0.64	+0.4
3,697,836	+		CCNA_03540	0.65	+0.0
3,697,836	+		CCNA_03540	0.65	-0.8
3,697,836	+		CCNA_03540	0.65	-1.7
3,697,842	+		CCNA_03540	0.66	+0.9
3,697,844	-		CCNA_03540	0.66	-0.4
3,697,844	-		CCNA_03540	0.66	-1.8
3,697,856	+		CCNA_03540	0.68	-1.2
3,697,857	+		CCNA_03540	0.68	-0.5
3,697,871	-		CCNA_03540	0.70	+2.4
3,697,873	+		CCNA_03540	0.71	+1.2
3,697,883	-		CCNA_03540	0.72	-1.2
3,697,890	+		CCNA_03540	0.73	+0.4
3,697,948	+		CCNA_03540	0.82	-0.3
3,697,960	+		CCNA_03540	0.84	-2.4
3,697,960	+		CCNA_03540	0.84	-0.2