Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03478

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,640,781	+				+1.0
3,640,783	+				+1.6
3,640,789	-				-0.6
3,640,789	-				+1.7
3,640,789	-				-1.4
3,640,809	+				+1.3
3,640,814	+				-0.2
3,640,864	+		CCNA_03476	0.15	+1.4
3,640,874	+		CCNA_03476	0.17	-1.3
3,640,874	+				+0.8
3,640,882	-		CCNA_03476	0.19	+0.0
3,640,882	-		CCNA_03476	0.19	+0.1
3,640,923	+		CCNA_03476	0.28	+0.6
3,640,923	+		CCNA_03476	0.28	-2.3
3,640,931	-		CCNA_03476	0.30	-0.9
3,640,946	-		CCNA_03476	0.33	-0.4
3,640,968	+		CCNA_03476	0.38	-0.6
3,640,984	+		CCNA_03476	0.42	-0.6
3,641,026	-		CCNA_03476	0.51	-1.1
3,641,047	+		CCNA_03476	0.56	-0.2
3,641,081	-		CCNA_03476	0.63	-0.8
3,641,111	-		CCNA_03476	0.70	-0.9
3,641,158	-		CCNA_03476	0.80	+0.8
3,641,204	+				-1.2
3,641,207	-				+1.4
3,641,222	-				+0.1
3,641,227	-				-0.8
3,641,227	-				+0.4
3,641,228	-				+0.1
3,641,252	+				+0.3
3,641,258	-				-0.8
3,641,258	-				-1.1
3,641,260	-				-0.8
3,641,356	-		CCNA_03477	0.27	+0.1
3,641,356	-		CCNA_03477	0.27	-1.2
3,641,372	+		CCNA_03477	0.31	-1.5
3,641,378	+		CCNA_03477	0.33	+1.2
3,641,378	-		CCNA_03477	0.33	+1.8
3,641,386	-		CCNA_03477	0.35	+1.9
3,641,386	-		CCNA_03477	0.35	+1.8
3,641,442	-		CCNA_03477	0.48	+1.4
3,641,444	+		CCNA_03477	0.49	-0.4
3,641,447	-		CCNA_03477	0.49	+0.3
3,641,452	-		CCNA_03477	0.50	+0.4
3,641,452	-		CCNA_03477	0.50	-0.6
3,641,455	+		CCNA_03477	0.51	-1.2
3,641,465	-		CCNA_03477	0.54	-1.9
3,641,479	+		CCNA_03477	0.57	-0.4
3,641,490	+		CCNA_03477	0.60	-2.2
3,641,490	+		CCNA_03477	0.60	-1.7
3,641,490	+		CCNA_03477	0.60	+1.3
3,641,495	+		CCNA_03477	0.61	+0.1
3,641,498	-		CCNA_03477	0.62	+0.9
3,641,498	-		CCNA_03477	0.62	-0.1
3,641,498	-		CCNA_03477	0.62	-1.1
3,641,498	-		CCNA_03477	0.62	-1.9
3,641,498	-		CCNA_03477	0.62	-0.4
3,641,498	-		CCNA_03477	0.62	-1.3
3,641,503	-		CCNA_03477	0.63	-0.7
3,641,617	+				+0.1
3,641,651	+				-0.8
3,641,652	-				-1.7
3,641,714	-				-0.2
3,641,773	-				+2.4
3,641,784	-				-0.9
3,641,822	-				+0.9
3,641,833	+				+1.6
3,641,846	-		CCNA_03478	0.11	-0.8
3,641,855	+		CCNA_03478	0.12	+1.7
3,641,897	-		CCNA_03478	0.16	+0.4
3,641,904	-		CCNA_03478	0.17	+1.9
3,641,906	-		CCNA_03478	0.17	-1.3
3,641,945	-		CCNA_03478	0.21	-0.4
3,642,018	-		CCNA_03478	0.29	-0.2
3,642,040	+		CCNA_03478	0.31	+0.4
3,642,043	-		CCNA_03478	0.31	+0.1
3,642,069	+		CCNA_03478	0.34	+1.9
3,642,069	+		CCNA_03478	0.34	+1.1
3,642,069	+		CCNA_03478	0.34	+1.0
3,642,069	+		CCNA_03478	0.34	+2.1
3,642,069	+		CCNA_03478	0.34	-0.1
3,642,069	+		CCNA_03478	0.34	+1.3
3,642,069	+		CCNA_03478	0.34	+2.1
3,642,069	+		CCNA_03478	0.34	+3.1
3,642,077	-		CCNA_03478	0.35	+1.4
3,642,077	-		CCNA_03478	0.35	+2.4
3,642,077	-		CCNA_03478	0.35	-1.3
3,642,078	+		CCNA_03478	0.35	+1.3
3,642,088	+		CCNA_03478	0.36	+0.5
3,642,103	+		CCNA_03478	0.37	+1.3
3,642,133	+		CCNA_03478	0.41	+0.4
3,642,180	+		CCNA_03478	0.45	+0.8
3,642,188	-		CCNA_03478	0.46	-0.8
3,642,188	-		CCNA_03478	0.46	-0.7
3,642,188	-				+0.8
3,642,188	-		CCNA_03478	0.46	-0.8
3,642,198	-		CCNA_03478	0.47	+0.4
3,642,198	-		CCNA_03478	0.47	-1.5
3,642,212	+		CCNA_03478	0.49	-0.1
3,642,246	+		CCNA_03478	0.52	+2.1
3,642,246	+		CCNA_03478	0.52	+2.1
3,642,246	+		CCNA_03478	0.52	+2.6
3,642,246	+		CCNA_03478	0.52	+1.4
3,642,246	+		CCNA_03478	0.52	+2.2
3,642,246	+		CCNA_03478	0.52	+1.0
3,642,246	+		CCNA_03478	0.52	+0.2
3,642,251	+		CCNA_03478	0.53	+1.4
3,642,254	-		CCNA_03478	0.53	-1.4
3,642,260	-		CCNA_03478	0.54	+0.8
3,642,274	+		CCNA_03478	0.55	+2.4
3,642,351	-		CCNA_03478	0.63	+0.1
3,642,422	+		CCNA_03478	0.71	+1.5
3,642,498	+		CCNA_03478	0.79	+1.4
3,642,503	+		CCNA_03478	0.79	+1.9
3,642,506	-		CCNA_03478	0.79	-0.6
3,642,545	+		CCNA_03478	0.83	+1.7
3,642,566	+		CCNA_03478	0.86	+2.3
3,642,566	+		CCNA_03478	0.86	+2.0
3,642,568	+		CCNA_03478	0.86	+2.2
3,642,568	+		CCNA_03478	0.86	+2.0
3,642,574	-		CCNA_03478	0.86	+0.5
3,642,576	-		CCNA_03478	0.87	-0.4
3,642,576	-		CCNA_03478	0.87	-2.1
3,642,576	-		CCNA_03478	0.87	-1.4
3,642,578	+		CCNA_03478	0.87	+1.9
3,642,601	+		CCNA_03478	0.89	+0.9
3,642,614	-				-2.1
3,642,624	+				+0.8
3,642,632	-				+1.2
3,642,632	-				+2.4
3,642,655	+				+0.9
3,642,663	-				-1.6
3,642,663	-				+1.0
3,642,686	+				-0.4
3,642,845	+				-0.2
3,642,860	+		CCNA_03479	0.11	+0.1
3,642,933	-		CCNA_03479	0.27	+3.4
3,642,933	-		CCNA_03479	0.27	+3.9
3,642,933	-		CCNA_03479	0.27	+3.7
3,642,948	-		CCNA_03479	0.30	+3.7
3,642,953	-		CCNA_03479	0.32	+3.5
3,642,958	-		CCNA_03479	0.33	+3.6
3,643,007	+		CCNA_03479	0.44	+0.1
3,643,015	-		CCNA_03479	0.45	+3.1
3,643,070	-		CCNA_03479	0.58	+3.8
3,643,084	-		CCNA_03479	0.61	+4.1
3,643,092	-		CCNA_03479	0.63	+3.7
3,643,094	-		CCNA_03479	0.63	+3.7
3,643,112	-		CCNA_03479	0.67	+3.4
3,643,116	-		CCNA_03479	0.68	+3.6
3,643,139	+		CCNA_03479	0.73	+2.4
3,643,147	-		CCNA_03479	0.75	+3.4
3,643,158	+		CCNA_03479	0.77	-0.3
3,643,166	-		CCNA_03479	0.79	+1.6
3,643,233	+				+0.8
3,643,242	-				+2.0
3,643,405	-				-1.8
3,643,455	-		CCNA_03480	0.14	+0.1
3,643,498	+		CCNA_03480	0.19	-1.5
3,643,570	+		CCNA_03480	0.27	-1.0
3,643,577	+		CCNA_03480	0.28	-0.4
3,643,577	+		CCNA_03480	0.28	-0.8
3,643,577	+		CCNA_03480	0.28	-2.4
3,643,622	+		CCNA_03480	0.33	-1.4
3,643,643	-		CCNA_03480	0.36	+0.8