Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03287

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,455,440	-		CCNA_03285	0.51	+1.3
3,455,484	+		CCNA_03285	0.56	+0.3
3,455,486	+		CCNA_03285	0.56	+1.5
3,455,491	+		CCNA_03285	0.57	-0.3
3,455,494	-		CCNA_03285	0.57	-0.2
3,455,494	-		CCNA_03285	0.57	+0.1
3,455,514	+		CCNA_03285	0.59	-0.8
3,455,580	+		CCNA_03285	0.66	-1.0
3,455,593	+		CCNA_03285	0.67	-1.5
3,455,614	+		CCNA_03285	0.69	-0.2
3,455,614	+		CCNA_03285	0.69	-0.9
3,455,614	+		CCNA_03285	0.69	+0.9
3,455,614	+		CCNA_03285	0.69	+0.6
3,455,614	+		CCNA_03285	0.69	-2.6
3,455,614	+		CCNA_03285	0.69	-1.7
3,455,622	-		CCNA_03285	0.70	-0.7
3,455,622	-				+2.6
3,455,622	-		CCNA_03285	0.70	-0.2
3,455,622	-		CCNA_03285	0.70	-0.9
3,455,629	-		CCNA_03285	0.71	+1.0
3,455,634	-		CCNA_03285	0.71	-0.7
3,455,634	-		CCNA_03285	0.71	-0.4
3,455,665	+		CCNA_03285	0.75	+1.0
3,455,665	+		CCNA_03285	0.75	+0.7
3,455,705	-		CCNA_03285	0.79	-2.0
3,455,820	-				-1.2
3,455,842	-				+1.9
3,455,862	+				-0.0
3,455,870	-				-0.6
3,455,903	+				+1.0
3,455,934	-				-0.1
3,455,971	+		CCNA_03286	0.12	+0.6
3,455,971	+		CCNA_03286	0.12	+2.6
3,455,971	+		CCNA_03286	0.12	+0.6
3,455,996	+		CCNA_03286	0.16	-0.4
3,456,004	-		CCNA_03286	0.17	+1.0
3,456,004	-		CCNA_03286	0.17	+0.4
3,456,004	-		CCNA_03286	0.17	+0.3
3,456,025	+		CCNA_03286	0.20	-0.4
3,456,065	-		CCNA_03286	0.26	+0.4
3,456,143	-		CCNA_03286	0.37	-0.4
3,456,145	+		CCNA_03286	0.38	-0.0
3,456,153	-		CCNA_03286	0.39	-0.8
3,456,154	-		CCNA_03286	0.39	+0.6
3,456,164	+		CCNA_03286	0.41	-0.7
3,456,172	-		CCNA_03286	0.42	+0.6
3,456,185	-		CCNA_03286	0.44	+0.4
3,456,231	+		CCNA_03286	0.50	-3.2
3,456,243	-		CCNA_03286	0.52	-0.0
3,456,254	-		CCNA_03286	0.54	-0.6
3,456,294	+		CCNA_03286	0.60	-0.1
3,456,450	+				-1.7
3,456,450	+				-1.2
3,456,451	+				+0.7
3,456,458	-				+2.5
3,456,528	-				+3.8
3,456,618	-		CCNA_03287	0.59	+3.9
3,456,619	-		CCNA_03287	0.60	+3.6
3,456,619	-		CCNA_03287	0.60	+3.6
3,456,619	-		CCNA_03287	0.60	+3.8
3,456,619	-		CCNA_03287	0.60	+3.6
3,456,620	-		CCNA_03287	0.60	+4.0
3,456,641	-		CCNA_03287	0.67	+3.8
3,456,641	-		CCNA_03287	0.67	+3.9
3,456,666	-		CCNA_03287	0.75	+3.8
3,456,787	-				-0.1
3,456,814	-				+0.0
3,456,825	+				+0.7
3,456,825	+				+0.2
3,456,825	+				-0.4
3,456,825	+				+1.5
3,456,825	+				-0.6
3,456,825	+				+0.7
3,456,825	+				+1.8
3,456,833	-				-0.9
3,456,833	-				+2.6
3,456,851	+		CCNA_03288	0.17	+1.6
3,456,893	-		CCNA_03288	0.40	+0.6
3,456,903	-		CCNA_03288	0.45	+1.3
3,456,916	-		CCNA_03288	0.52	-1.5
3,456,927	-		CCNA_03288	0.58	-0.7
3,456,945	-		CCNA_03288	0.67	-0.4
3,456,963	+		CCNA_03288	0.77	+0.7
3,456,990	+				-0.3
3,457,256	+		CCNA_03289	0.62	+3.4
3,457,256	+		CCNA_03289	0.62	+3.5
3,457,256	+		CCNA_03289	0.62	+3.8
3,457,264	+		CCNA_03289	0.64	+2.1
3,457,266	+		CCNA_03289	0.64	+3.6
3,457,266	+		CCNA_03289	0.64	+3.8
3,457,271	+		CCNA_03289	0.66	+4.1
3,457,276	+		CCNA_03289	0.67	+3.3
3,457,286	+		CCNA_03289	0.69	+3.6
3,457,306	+		CCNA_03289	0.74	+3.8
3,457,365	+		CCNA_03289	0.89	+4.1
3,457,365	+		CCNA_03289	0.89	+4.3
3,457,401	+				-0.5
3,457,401	+				+1.4
3,457,401	+				-1.2
3,457,401	+				-0.3
3,457,401	+				-2.0
3,457,401	+				+0.3
3,457,401	+				-0.7
3,457,401	+				-0.1
3,457,401	+				-0.7
3,457,401	+				+1.2
3,457,401	+				-0.4
3,457,401	+				+3.2
3,457,401	+				-1.9
3,457,409	-				-0.6
3,457,409	-				-2.2
3,457,409	-				+1.0
3,457,409	-				-1.2
3,457,409	-				-0.7
3,457,409	-				+1.6
3,457,409	-				-1.5
3,457,409	-				-1.8
3,457,409	-				-1.8
3,457,409	-				+0.6
3,457,409	-				-0.7
3,457,409	-				-2.6
3,457,412	+				+1.6
3,457,412	+				+0.3
3,457,412	+				+1.3
3,457,420	-				+1.6
3,457,420	-				-1.2
3,457,420	-				+1.0
3,457,421	+				+0.8
3,457,429	-				-2.0
3,457,429	-				-1.2
3,457,457	+				-0.3
3,457,500	+		CCNA_03290	0.18	+1.8
3,457,500	+		CCNA_03290	0.18	+1.9
3,457,508	-		CCNA_03290	0.19	-2.6
3,457,510	+		CCNA_03290	0.20	+2.6
3,457,544	-		CCNA_03290	0.27	-1.2
3,457,562	+		CCNA_03290	0.31	+0.3
3,457,565	-				+1.9
3,457,565	-		CCNA_03290	0.31	-0.9
3,457,570	-		CCNA_03290	0.32	-0.2
3,457,577	-		CCNA_03290	0.34	-0.2
3,457,603	+		CCNA_03290	0.39	-1.0
3,457,648	+		CCNA_03290	0.49	-1.1
3,457,648	+		CCNA_03290	0.49	-0.9
3,457,656	-		CCNA_03290	0.51	-1.9
3,457,656	-		CCNA_03290	0.51	-1.8
3,457,656	-		CCNA_03290	0.51	-0.2
3,457,669	+		CCNA_03290	0.53	+0.0
3,457,713	+		CCNA_03290	0.62	+0.0