Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03215

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
3,375,169	+		CCNA_03212	0.28	+1.1
3,375,170	-		CCNA_03212	0.29	+1.8
3,375,173	+		CCNA_03212	0.30	+0.7
3,375,184	+		CCNA_03212	0.35	+1.1
3,375,184	+		CCNA_03212	0.35	+0.4
3,375,184	+		CCNA_03212	0.35	-0.4
3,375,192	-		CCNA_03212	0.39	+0.9
3,375,194	+		CCNA_03212	0.40	+0.7
3,375,194	+		CCNA_03212	0.40	-0.3
3,375,202	-		CCNA_03212	0.44	+1.4
3,375,202	-		CCNA_03212	0.44	+1.4
3,375,207	-		CCNA_03212	0.46	+0.5
3,375,222	+		CCNA_03212	0.53	-1.8
3,375,228	-		CCNA_03212	0.56	+1.7
3,375,264	+		CCNA_03212	0.72	-0.8
3,375,297	+		CCNA_03212	0.88	-0.1
3,375,319	+				-0.1
3,375,382	+				-0.3
3,375,390	-				-0.1
3,375,416	-				+3.3
3,375,441	+				-1.4
3,375,441	+				-1.5
3,375,449	-				+0.7
3,375,475	-		CCNA_03213	0.12	-0.3
3,375,567	+		CCNA_03213	0.41	+0.3
3,375,591	-		CCNA_03213	0.49	+2.5
3,375,599	-		CCNA_03213	0.52	+1.1
3,375,604	+		CCNA_03213	0.53	+2.1
3,375,604	+		CCNA_03213	0.53	-0.9
3,375,610	+		CCNA_03213	0.55	+0.7
3,375,626	+		CCNA_03213	0.61	-1.9
3,375,629	-		CCNA_03213	0.61	+1.4
3,375,664	-		CCNA_03213	0.73	+0.2
3,375,702	+		CCNA_03213	0.85	-1.3
3,375,702	+		CCNA_03213	0.85	-1.9
3,375,725	-				+2.0
3,375,733	-				+2.9
3,375,738	+				-0.2
3,375,819	+		CCNA_03214	0.15	-1.7
3,375,871	-		CCNA_03214	0.28	+3.5
3,375,873	-		CCNA_03214	0.28	+2.7
3,375,876	+		CCNA_03214	0.29	-0.1
3,375,884	-		CCNA_03214	0.31	+2.6
3,375,937	+		CCNA_03214	0.44	-0.1
3,375,937	+		CCNA_03214	0.44	-0.5
3,375,945	-		CCNA_03214	0.46	+2.5
3,375,945	-		CCNA_03214	0.46	+2.3
3,375,945	-		CCNA_03214	0.46	+1.9
3,375,945	-		CCNA_03214	0.46	+2.8
3,375,945	-		CCNA_03214	0.46	+2.0
3,375,971	-		CCNA_03214	0.52	+2.4
3,375,987	+		CCNA_03214	0.56	+0.4
3,376,031	-		CCNA_03214	0.67	+1.9
3,376,032	-		CCNA_03214	0.67	+1.7
3,376,036	-		CCNA_03214	0.68	+2.2
3,376,055	+		CCNA_03214	0.73	-1.0
3,376,058	-		CCNA_03214	0.73	+3.0
3,376,072	+		CCNA_03214	0.77	+0.7
3,376,072	+				+3.7
3,376,072	+		CCNA_03214	0.77	+1.1
3,376,080	+		CCNA_03214	0.79	-0.9
3,376,081	+		CCNA_03214	0.79	+3.3
3,376,086	+		CCNA_03214	0.80	+1.1
3,376,089	-		CCNA_03214	0.81	+2.8
3,376,133	+				+1.1
3,376,216	+				+1.0
3,376,216	+				+0.7
3,376,236	-				+1.5
3,376,309	-		CCNA_03215	0.10	-1.5
3,376,327	+		CCNA_03215	0.11	+3.0
3,376,330	-		CCNA_03215	0.12	-0.5
3,376,376	+		CCNA_03215	0.15	+3.1
3,376,384	-				+2.7
3,376,384	-		CCNA_03215	0.15	+0.7
3,376,384	-		CCNA_03215	0.15	+0.7
3,376,386	+		CCNA_03215	0.16	+2.8
3,376,386	+		CCNA_03215	0.16	+2.9
3,376,386	+		CCNA_03215	0.16	+2.6
3,376,394	-		CCNA_03215	0.16	-0.9
3,376,442	-		CCNA_03215	0.20	-1.2
3,376,497	-		CCNA_03215	0.23	+0.4
3,376,551	+		CCNA_03215	0.27	+3.0
3,376,582	+		CCNA_03215	0.29	+2.6
3,376,583	+		CCNA_03215	0.30	+3.2
3,376,583	+		CCNA_03215	0.30	+2.8
3,376,591	-		CCNA_03215	0.30	+2.7
3,376,609	+		CCNA_03215	0.31	+2.1
3,376,617	-		CCNA_03215	0.32	+0.1
3,376,617	-		CCNA_03215	0.32	+0.2
3,376,630	+		CCNA_03215	0.33	+4.6
3,376,632	-				+3.7
3,376,677	-		CCNA_03215	0.36	-1.2
3,376,677	-		CCNA_03215	0.36	+1.1
3,376,706	+		CCNA_03215	0.38	+3.7
3,376,776	+		CCNA_03215	0.43	+3.2
3,376,816	+		CCNA_03215	0.46	+4.7
3,376,836	+		CCNA_03215	0.47	+2.5
3,376,894	+		CCNA_03215	0.51	+3.6
3,376,897	-				+1.1
3,376,902	-		CCNA_03215	0.52	-1.5
3,376,920	+		CCNA_03215	0.53	+3.4
3,376,920	+		CCNA_03215	0.53	+3.5
3,376,920	+		CCNA_03215	0.53	+2.8
3,376,920	+		CCNA_03215	0.53	+3.2
3,376,937	+		CCNA_03215	0.55	+2.7
3,376,942	+		CCNA_03215	0.55	+3.1
3,376,942	+		CCNA_03215	0.55	+4.3
3,376,955	-		CCNA_03215	0.56	-0.1
3,376,957	+		CCNA_03215	0.56	+3.0
3,376,960	-		CCNA_03215	0.56	-1.4
3,376,984	+		CCNA_03215	0.58	+3.6
3,376,994	+		CCNA_03215	0.59	+3.5
3,376,997	-		CCNA_03215	0.59	-0.8
3,377,002	-		CCNA_03215	0.59	+0.7
3,377,002	-		CCNA_03215	0.59	-0.8
3,377,063	+		CCNA_03215	0.63	+3.1
3,377,071	-		CCNA_03215	0.64	-0.8
3,377,119	+		CCNA_03215	0.67	+2.9
3,377,133	+		CCNA_03215	0.68	+3.2
3,377,162	+		CCNA_03215	0.70	+3.3
3,377,170	-		CCNA_03215	0.71	+1.1
3,377,172	+		CCNA_03215	0.71	+3.0
3,377,188	+		CCNA_03215	0.72	+3.4
3,377,238	+		CCNA_03215	0.76	+3.1
3,377,288	-		CCNA_03215	0.79	+0.1
3,377,319	+		CCNA_03215	0.81	+3.7
3,377,387	+		CCNA_03215	0.86	+3.5
3,377,389	-		CCNA_03215	0.86	+0.6
3,377,451	+				+3.5
3,377,473	-				-0.4
3,377,538	+				+1.1
3,377,554	-				+0.1
3,377,554	-				+0.0
3,377,565	+				+0.7
3,377,592	+				-1.1
3,377,599	+		CCNA_03216	0.11	-1.7
3,377,605	+		CCNA_03216	0.14	+0.7
3,377,613	-		CCNA_03216	0.18	+0.4
3,377,671	-		CCNA_03216	0.47	-0.7
3,377,734	+		CCNA_03216	0.78	+1.1
3,377,737	-		CCNA_03216	0.80	+0.8
3,377,738	+		CCNA_03216	0.80	+1.7
3,377,738	+		CCNA_03216	0.80	+0.1
3,377,744	+		CCNA_03216	0.83	-0.1
3,377,746	-		CCNA_03216	0.84	+1.0
3,377,767	+				+1.1
3,377,774	-				+0.6
3,377,780	-				-1.4
3,377,831	-				+1.1
3,377,831	-				+2.1
3,377,831	-				-0.3
3,377,831	-				-1.4
3,377,913	-				-0.1
3,377,951	+				+0.7
3,377,951	+				-1.8
3,377,954	-				-0.8
3,377,968	+				+0.0
3,377,968	+				+1.8
3,377,976	-				-0.8
3,377,995	-				-1.0
3,378,029	-		CCNA_03217	0.12	+1.8
3,378,050	+		CCNA_03217	0.15	+2.7
3,378,089	+		CCNA_03217	0.21	-1.2
3,378,234	+		CCNA_03217	0.44	+0.7
3,378,254	+		CCNA_03217	0.47	+0.7
3,378,287	+		CCNA_03217	0.52	-0.1
3,378,287	+		CCNA_03217	0.52	+1.7
3,378,287	+		CCNA_03217	0.52	-0.5
3,378,287	+		CCNA_03217	0.52	+2.0
3,378,287	+		CCNA_03217	0.52	+1.5
3,378,287	+		CCNA_03217	0.52	+0.7
3,378,287	+		CCNA_03217	0.52	+0.7
3,378,287	+		CCNA_03217	0.52	+0.9
3,378,288	-		CCNA_03217	0.53	+0.9
3,378,288	-		CCNA_03217	0.53	-0.8
3,378,288	-		CCNA_03217	0.53	-0.8
3,378,295	-		CCNA_03217	0.54	+0.3
3,378,295	-		CCNA_03217	0.54	-0.4
3,378,295	-		CCNA_03217	0.54	-0.4
3,378,295	-		CCNA_03217	0.54	+3.3
3,378,295	-		CCNA_03217	0.54	+0.3
3,378,295	-		CCNA_03217	0.54	-0.1
3,378,295	-		CCNA_03217	0.54	+1.1
3,378,314	-		CCNA_03217	0.57	-0.2
3,378,343	+		CCNA_03217	0.61	+1.6
3,378,384	-		CCNA_03217	0.68	+1.4
3,378,406	+				+1.7
3,378,465	+		CCNA_03217	0.81	-0.3
3,378,499	-		CCNA_03217	0.86	-0.5
3,378,499	-		CCNA_03217	0.86	-0.7
3,378,501	+		CCNA_03217	0.86	+1.1
3,378,501	+		CCNA_03217	0.86	+0.7
3,378,501	+		CCNA_03217	0.86	+1.7
3,378,501	+		CCNA_03217	0.86	+0.7
3,378,501	+		CCNA_03217	0.86	+1.7
3,378,501	+		CCNA_03217	0.86	-0.9
3,378,501	+		CCNA_03217	0.86	-1.5
3,378,509	-		CCNA_03217	0.88	+0.7
3,378,509	-		CCNA_03217	0.88	-1.0
3,378,509	-		CCNA_03217	0.88	+1.3
3,378,509	-		CCNA_03217	0.88	+0.8
3,378,546	-				+0.1
3,378,555	-				-0.2
3,378,578	-				-0.5
3,378,578	-				+1.7