Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02756 and CCNA_02757 are separated by 154 nucleotides CCNA_02757 and CCNA_02758 are separated by 57 nucleotides CCNA_02758 and CCNA_02759 are separated by 152 nucleotides
CCNA_02756: CCNA_02756 - competence/damage-inducible protein CinA, at 2,920,073 to 2,920,831
_02756
CCNA_02757: CCNA_02757 - sugar fermentation stimulation protein A, at 2,920,986 to 2,921,705
_02757
CCNA_02758: CCNA_02758 - hypothetical protein, at 2,921,763 to 2,922,152
_02758
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
Position (kb)
2921
2922
2923 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2920.771 kb on - strand at 2920.807 kb on - strand at 2920.812 kb on - strand at 2920.850 kb on - strand at 2920.859 kb on + strand at 2920.859 kb on + strand at 2920.860 kb on - strand at 2920.861 kb on - strand at 2920.861 kb on - strand at 2920.867 kb on - strand at 2920.867 kb on - strand at 2920.867 kb on - strand at 2920.867 kb on - strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.875 kb on + strand at 2920.875 kb on + strand at 2920.877 kb on - strand at 2920.883 kb on - strand at 2920.883 kb on - strand at 2920.929 kb on - strand at 2920.946 kb on - strand at 2920.950 kb on + strand at 2920.951 kb on - strand at 2920.966 kb on - strand at 2920.972 kb on + strand at 2920.980 kb on - strand at 2920.981 kb on - strand at 2921.047 kb on - strand at 2921.047 kb on - strand at 2921.047 kb on - strand at 2921.097 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.173 kb on - strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.186 kb on + strand, within CCNA_02757 at 2921.186 kb on + strand, within CCNA_02757 at 2921.190 kb on - strand, within CCNA_02757 at 2921.221 kb on - strand, within CCNA_02757 at 2921.221 kb on - strand, within CCNA_02757 at 2921.221 kb on - strand, within CCNA_02757 at 2921.221 kb on - strand, within CCNA_02757 at 2921.224 kb on + strand, within CCNA_02757 at 2921.227 kb on - strand, within CCNA_02757 at 2921.275 kb on + strand, within CCNA_02757 at 2921.275 kb on + strand at 2921.300 kb on + strand, within CCNA_02757 at 2921.308 kb on - strand, within CCNA_02757 at 2921.308 kb on - strand, within CCNA_02757 at 2921.313 kb on + strand, within CCNA_02757 at 2921.341 kb on + strand, within CCNA_02757 at 2921.385 kb on - strand, within CCNA_02757 at 2921.410 kb on + strand, within CCNA_02757 at 2921.410 kb on + strand, within CCNA_02757 at 2921.418 kb on - strand, within CCNA_02757 at 2921.418 kb on - strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.454 kb on + strand, within CCNA_02757 at 2921.462 kb on - strand, within CCNA_02757 at 2921.479 kb on - strand, within CCNA_02757 at 2921.483 kb on + strand, within CCNA_02757 at 2921.483 kb on + strand, within CCNA_02757 at 2921.515 kb on + strand, within CCNA_02757 at 2921.567 kb on - strand, within CCNA_02757 at 2921.584 kb on + strand, within CCNA_02757 at 2921.605 kb on - strand, within CCNA_02757 at 2921.607 kb on + strand, within CCNA_02757 at 2921.608 kb on + strand, within CCNA_02757 at 2921.611 kb on - strand, within CCNA_02757 at 2921.621 kb on + strand, within CCNA_02757 at 2921.621 kb on + strand, within CCNA_02757 at 2921.621 kb on + strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.629 kb on - strand, within CCNA_02757 at 2921.629 kb on - strand, within CCNA_02757 at 2921.642 kb on + strand at 2921.725 kb on + strand at 2921.733 kb on - strand at 2921.796 kb on + strand at 2921.796 kb on + strand at 2921.804 kb on - strand, within CCNA_02758 at 2921.827 kb on + strand, within CCNA_02758 at 2921.837 kb on + strand, within CCNA_02758 at 2921.917 kb on + strand, within CCNA_02758 at 2921.924 kb on - strand, within CCNA_02758 at 2921.925 kb on - strand, within CCNA_02758 at 2922.032 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.048 kb on + strand, within CCNA_02758 at 2922.048 kb on + strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.056 kb on - strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.089 kb on - strand, within CCNA_02758 at 2922.118 kb on + strand at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.155 kb on - strand at 2922.160 kb on + strand at 2922.162 kb on - strand at 2922.162 kb on - strand at 2922.162 kb on - strand at 2922.166 kb on + strand at 2922.167 kb on + strand at 2922.180 kb on + strand at 2922.251 kb on - strand at 2922.264 kb on - strand at 2922.268 kb on + strand at 2922.271 kb on - strand at 2922.271 kb on - strand at 2922.301 kb on + strand at 2922.313 kb on + strand at 2922.313 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.355 kb on + strand at 2922.355 kb on + strand at 2922.359 kb on + strand at 2922.359 kb on + strand at 2922.362 kb on - strand at 2922.363 kb on - strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.379 kb on + strand at 2923.081 kb on + strand at 2923.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,920,771 - -0.3 2,920,807 - +0.9 2,920,812 - +0.6 2,920,850 - -1.5 2,920,859 + +1.3 2,920,859 + +1.3 2,920,860 - +2.9 2,920,861 - +0.5 2,920,861 - +2.3 2,920,867 - +0.9 2,920,867 - -0.4 2,920,867 - -1.0 2,920,867 - +0.6 2,920,869 + -0.6 2,920,869 + +0.5 2,920,869 + -1.2 2,920,869 + +0.1 2,920,869 + -1.4 2,920,869 + -1.0 2,920,875 + +0.1 2,920,875 + -0.1 2,920,877 - +1.3 2,920,883 - +0.1 2,920,883 - +0.4 2,920,929 - +1.9 2,920,946 - +1.3 2,920,950 + -0.8 2,920,951 - +0.1 2,920,966 - +2.9 2,920,972 + +0.1 2,920,980 - +0.9 2,920,981 - +0.9 2,921,047 - +0.3 2,921,047 - +1.9 2,921,047 - +0.1 2,921,097 - CCNA_02757 0.15 -1.9 2,921,135 - CCNA_02757 0.21 +0.6 2,921,135 - CCNA_02757 0.21 +0.7 2,921,135 - CCNA_02757 0.21 +0.9 2,921,173 - CCNA_02757 0.26 -0.9 2,921,174 + CCNA_02757 0.26 +0.6 2,921,174 + CCNA_02757 0.26 +0.1 2,921,174 + CCNA_02757 0.26 -1.3 2,921,174 + CCNA_02757 0.26 +0.9 2,921,174 + CCNA_02757 0.26 +0.6 2,921,174 + CCNA_02757 0.26 -0.6 2,921,174 + CCNA_02757 0.26 -0.1 2,921,174 + CCNA_02757 0.26 +0.8 2,921,174 + CCNA_02757 0.26 -0.6 2,921,174 + CCNA_02757 0.26 +0.6 2,921,174 + CCNA_02757 0.26 -0.1 2,921,174 + CCNA_02757 0.26 +0.9 2,921,174 + CCNA_02757 0.26 -0.2 2,921,174 + CCNA_02757 0.26 -1.2 2,921,182 - CCNA_02757 0.27 -2.6 2,921,182 - CCNA_02757 0.27 +0.9 2,921,182 - CCNA_02757 0.27 +0.9 2,921,182 - CCNA_02757 0.27 -0.1 2,921,182 - CCNA_02757 0.27 -0.9 2,921,182 - CCNA_02757 0.27 +2.0 2,921,182 - CCNA_02757 0.27 -1.9 2,921,182 - CCNA_02757 0.27 -1.2 2,921,182 - CCNA_02757 0.27 +2.9 2,921,182 - CCNA_02757 0.27 +0.6 2,921,182 - CCNA_02757 0.27 +0.6 2,921,182 - CCNA_02757 0.27 -1.6 2,921,182 - CCNA_02757 0.27 +0.6 2,921,182 - CCNA_02757 0.27 +1.3 2,921,182 - CCNA_02757 0.27 +0.7 2,921,182 - CCNA_02757 0.27 -0.8 2,921,182 - CCNA_02757 0.27 +0.1 2,921,182 - CCNA_02757 0.27 -1.3 2,921,182 - CCNA_02757 0.27 +2.5 2,921,182 - CCNA_02757 0.27 +0.7 2,921,182 - CCNA_02757 0.27 -1.1 2,921,182 - CCNA_02757 0.27 -0.7 2,921,186 + CCNA_02757 0.28 -1.9 2,921,186 + CCNA_02757 0.28 -0.9 2,921,190 - CCNA_02757 0.28 -0.0 2,921,221 - CCNA_02757 0.33 +2.9 2,921,221 - CCNA_02757 0.33 +1.0 2,921,221 - CCNA_02757 0.33 -0.2 2,921,221 - CCNA_02757 0.33 +0.9 2,921,224 + CCNA_02757 0.33 +0.9 2,921,227 - CCNA_02757 0.33 -0.9 2,921,275 + CCNA_02757 0.40 +0.1 2,921,275 + +2.9 2,921,300 + CCNA_02757 0.44 +0.1 2,921,308 - CCNA_02757 0.45 -0.6 2,921,308 - CCNA_02757 0.45 +0.9 2,921,313 + CCNA_02757 0.45 +1.3 2,921,341 + CCNA_02757 0.49 -0.3 2,921,385 - CCNA_02757 0.55 +4.3 2,921,410 + CCNA_02757 0.59 -0.7 2,921,410 + CCNA_02757 0.59 +0.1 2,921,418 - CCNA_02757 0.60 -0.6 2,921,418 - CCNA_02757 0.60 +1.9 2,921,435 + CCNA_02757 0.62 +0.6 2,921,447 + CCNA_02757 0.64 +1.7 2,921,454 + CCNA_02757 0.65 +0.3 2,921,462 - CCNA_02757 0.66 -1.3 2,921,479 - CCNA_02757 0.68 +0.9 2,921,483 + CCNA_02757 0.69 -0.1 2,921,483 + CCNA_02757 0.69 +0.4 2,921,515 + CCNA_02757 0.73 -0.5 2,921,567 - CCNA_02757 0.81 -0.6 2,921,584 + CCNA_02757 0.83 +1.9 2,921,605 - CCNA_02757 0.86 +1.9 2,921,607 + CCNA_02757 0.86 +0.9 2,921,608 + CCNA_02757 0.86 +0.9 2,921,611 - CCNA_02757 0.87 -0.6 2,921,621 + CCNA_02757 0.88 +1.3 2,921,621 + CCNA_02757 0.88 +0.9 2,921,621 + CCNA_02757 0.88 -1.4 2,921,624 - CCNA_02757 0.89 -0.1 2,921,629 - CCNA_02757 0.89 +0.9 2,921,629 - CCNA_02757 0.89 -0.1 2,921,642 + +1.3 2,921,725 + +0.2 2,921,733 - +2.9 2,921,796 + +0.3 2,921,796 + -0.8 2,921,804 - CCNA_02758 0.11 +2.9 2,921,827 + CCNA_02758 0.16 -2.8 2,921,837 + CCNA_02758 0.19 -0.6 2,921,917 + CCNA_02758 0.39 +0.1 2,921,924 - CCNA_02758 0.41 +0.9 2,921,925 - CCNA_02758 0.42 -0.4 2,922,032 + CCNA_02758 0.69 -0.1 2,922,041 + CCNA_02758 0.71 -1.7 2,922,041 + CCNA_02758 0.71 -1.9 2,922,041 + CCNA_02758 0.71 -0.1 2,922,041 + CCNA_02758 0.71 -0.6 2,922,041 + CCNA_02758 0.71 -0.9 2,922,041 + CCNA_02758 0.71 -2.4 2,922,041 + CCNA_02758 0.71 -1.4 2,922,041 + CCNA_02758 0.71 -1.9 2,922,041 + CCNA_02758 0.71 -2.0 2,922,041 + CCNA_02758 0.71 -1.3 2,922,048 + CCNA_02758 0.73 -1.6 2,922,048 + CCNA_02758 0.73 +2.9 2,922,049 - CCNA_02758 0.73 +1.3 2,922,049 - CCNA_02758 0.73 +0.9 2,922,049 - CCNA_02758 0.73 -0.1 2,922,049 - CCNA_02758 0.73 +1.9 2,922,049 - CCNA_02758 0.73 -0.4 2,922,049 - CCNA_02758 0.73 -1.7 2,922,049 - CCNA_02758 0.73 -0.1 2,922,049 - CCNA_02758 0.73 -0.7 2,922,049 - CCNA_02758 0.73 +0.3 2,922,056 - CCNA_02758 0.75 +1.9 2,922,074 + CCNA_02758 0.80 -0.6 2,922,074 + CCNA_02758 0.80 -0.9 2,922,074 + CCNA_02758 0.80 -0.8 2,922,074 + CCNA_02758 0.80 +0.4 2,922,074 + CCNA_02758 0.80 +0.3 2,922,082 - CCNA_02758 0.82 +2.9 2,922,082 - CCNA_02758 0.82 +0.9 2,922,082 - CCNA_02758 0.82 -1.7 2,922,082 - CCNA_02758 0.82 +0.6 2,922,082 - CCNA_02758 0.82 -0.1 2,922,082 - CCNA_02758 0.82 -0.5 2,922,089 - CCNA_02758 0.84 +1.3 2,922,118 + -0.6 2,922,154 + -0.1 2,922,154 + -0.3 2,922,154 + -0.4 2,922,155 - -0.7 2,922,160 + +1.1 2,922,162 - +1.3 2,922,162 - +0.9 2,922,162 - -0.4 2,922,166 + -0.1 2,922,167 + +3.2 2,922,180 + -1.3 2,922,251 - -0.6 2,922,264 - -0.6 2,922,268 + +2.5 2,922,271 - +0.6 2,922,271 - +0.1 2,922,301 + +1.2 2,922,313 + +1.4 2,922,313 + +1.0 2,922,350 + -1.3 2,922,350 + +0.7 2,922,350 + +1.7 2,922,350 + +0.1 2,922,350 + -0.5 2,922,350 + +0.6 2,922,355 + -0.7 2,922,355 + +2.0 2,922,359 + +1.3 2,922,359 + -0.3 2,922,362 - +1.9 2,922,363 - +1.6 2,922,364 + +0.2 2,922,364 + +1.4 2,922,364 + -0.6 2,922,364 + +1.1 2,922,372 - +1.3 2,922,372 - +1.9 2,922,379 + +2.1 2,923,081 + +0.6 2,923,116 - -0.1
Or see this region's nucleotide sequence