Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02589 and CCNA_02590 are separated by 13 nucleotides CCNA_02590 and CCNA_02591 are separated by 49 nucleotides CCNA_02591 and CCNA_02592 are separated by 16 nucleotides CCNA_02592 and CCNA_02593 are separated by 399 nucleotides
CCNA_02589: CCNA_02589 - BolA-related transcriptional regulator, at 2,739,366 to 2,739,602
_02589
CCNA_02590: CCNA_02590 - aldo-keto reductase family protein, at 2,739,616 to 2,740,506
_02590
CCNA_02591: CCNA_02591 - glutaredoxin, at 2,740,556 to 2,740,897
_02591
CCNA_02592: CCNA_02592 - thioesterase, at 2,740,914 to 2,741,333
_02592
CCNA_02593: CCNA_02593 - hypothetical protein, at 2,741,733 to 2,742,110
_02593
Position (kb)
2740
2741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2739.605 kb on - strand at 2739.606 kb on + strand at 2739.667 kb on - strand at 2739.678 kb on + strand at 2739.683 kb on - strand at 2739.713 kb on + strand, within CCNA_02590 at 2739.713 kb on + strand, within CCNA_02590 at 2739.715 kb on + strand, within CCNA_02590 at 2739.721 kb on - strand, within CCNA_02590 at 2739.721 kb on - strand, within CCNA_02590 at 2739.738 kb on - strand, within CCNA_02590 at 2739.788 kb on - strand, within CCNA_02590 at 2739.793 kb on + strand, within CCNA_02590 at 2739.793 kb on + strand, within CCNA_02590 at 2739.799 kb on + strand, within CCNA_02590 at 2739.886 kb on + strand, within CCNA_02590 at 2739.895 kb on - strand, within CCNA_02590 at 2739.910 kb on + strand, within CCNA_02590 at 2739.926 kb on + strand, within CCNA_02590 at 2739.926 kb on + strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.969 kb on + strand, within CCNA_02590 at 2739.969 kb on + strand, within CCNA_02590 at 2739.977 kb on - strand, within CCNA_02590 at 2739.984 kb on - strand, within CCNA_02590 at 2740.000 kb on - strand, within CCNA_02590 at 2740.011 kb on - strand, within CCNA_02590 at 2740.063 kb on + strand, within CCNA_02590 at 2740.093 kb on - strand, within CCNA_02590 at 2740.144 kb on - strand, within CCNA_02590 at 2740.232 kb on - strand, within CCNA_02590 at 2740.263 kb on + strand, within CCNA_02590 at 2740.268 kb on - strand, within CCNA_02590 at 2740.333 kb on - strand, within CCNA_02590 at 2740.336 kb on + strand, within CCNA_02590 at 2740.349 kb on - strand, within CCNA_02590 at 2740.375 kb on + strand, within CCNA_02590 at 2740.392 kb on + strand, within CCNA_02590 at 2740.418 kb on + strand at 2740.421 kb on - strand at 2740.428 kb on + strand at 2740.479 kb on - strand at 2740.479 kb on - strand at 2740.500 kb on + strand at 2740.508 kb on - strand at 2740.855 kb on + strand, within CCNA_02591 at 2740.855 kb on + strand, within CCNA_02591 at 2740.863 kb on - strand at 2740.945 kb on + strand at 2740.945 kb on + strand at 2740.945 kb on + strand at 2740.950 kb on + strand at 2740.950 kb on + strand at 2740.951 kb on - strand at 2740.953 kb on - strand at 2741.036 kb on + strand, within CCNA_02592 at 2741.044 kb on - strand, within CCNA_02592 at 2741.054 kb on + strand, within CCNA_02592 at 2741.054 kb on + strand, within CCNA_02592 at 2741.055 kb on + strand, within CCNA_02592 at 2741.082 kb on + strand at 2741.082 kb on + strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.154 kb on + strand, within CCNA_02592 at 2741.162 kb on - strand, within CCNA_02592 at 2741.172 kb on + strand, within CCNA_02592 at 2741.174 kb on + strand, within CCNA_02592 at 2741.182 kb on - strand, within CCNA_02592 at 2741.189 kb on - strand, within CCNA_02592 at 2741.214 kb on - strand, within CCNA_02592 at 2741.235 kb on + strand, within CCNA_02592 at 2741.381 kb on - strand at 2741.431 kb on + strand at 2741.438 kb on - strand at 2741.445 kb on + strand at 2741.445 kb on + strand at 2741.453 kb on - strand at 2741.471 kb on - strand at 2741.535 kb on - strand at 2741.545 kb on + strand at 2741.575 kb on + strand at 2741.618 kb on + strand at 2741.626 kb on - strand at 2741.630 kb on - strand at 2741.672 kb on - strand at 2741.709 kb on - strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.720 kb on - strand at 2741.720 kb on - strand at 2741.720 kb on - strand at 2741.720 kb on - strand at 2741.786 kb on + strand, within CCNA_02593 at 2741.824 kb on + strand, within CCNA_02593 at 2741.863 kb on + strand, within CCNA_02593
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,739,605 - -0.7 2,739,606 + +0.4 2,739,667 - +0.8 2,739,678 + +0.2 2,739,683 - +0.2 2,739,713 + CCNA_02590 0.11 +1.1 2,739,713 + CCNA_02590 0.11 +0.9 2,739,715 + CCNA_02590 0.11 +1.6 2,739,721 - CCNA_02590 0.12 -0.8 2,739,721 - CCNA_02590 0.12 -0.9 2,739,738 - CCNA_02590 0.14 +1.2 2,739,788 - CCNA_02590 0.19 +1.2 2,739,793 + CCNA_02590 0.20 +2.1 2,739,793 + CCNA_02590 0.20 +1.3 2,739,799 + CCNA_02590 0.21 +1.4 2,739,886 + CCNA_02590 0.30 +1.7 2,739,895 - CCNA_02590 0.31 -1.8 2,739,910 + CCNA_02590 0.33 +1.9 2,739,926 + CCNA_02590 0.35 +2.2 2,739,926 + CCNA_02590 0.35 +2.5 2,739,934 - CCNA_02590 0.36 +1.2 2,739,934 - CCNA_02590 0.36 -0.4 2,739,934 - CCNA_02590 0.36 -0.9 2,739,969 + CCNA_02590 0.40 +1.1 2,739,969 + CCNA_02590 0.40 +1.8 2,739,977 - CCNA_02590 0.41 -0.1 2,739,984 - CCNA_02590 0.41 +1.2 2,740,000 - CCNA_02590 0.43 +1.2 2,740,011 - CCNA_02590 0.44 +1.8 2,740,063 + CCNA_02590 0.50 +2.5 2,740,093 - CCNA_02590 0.54 -1.2 2,740,144 - CCNA_02590 0.59 -0.2 2,740,232 - CCNA_02590 0.69 +0.2 2,740,263 + CCNA_02590 0.73 +2.7 2,740,268 - CCNA_02590 0.73 +0.8 2,740,333 - CCNA_02590 0.80 -0.9 2,740,336 + CCNA_02590 0.81 +2.7 2,740,349 - CCNA_02590 0.82 +0.2 2,740,375 + CCNA_02590 0.85 +1.8 2,740,392 + CCNA_02590 0.87 +1.0 2,740,418 + +1.6 2,740,421 - -0.8 2,740,428 + +1.1 2,740,479 - -0.8 2,740,479 - +0.2 2,740,500 + +0.8 2,740,508 - +1.2 2,740,855 + CCNA_02591 0.87 +2.6 2,740,855 + CCNA_02591 0.87 +3.4 2,740,863 - +0.4 2,740,945 + +2.9 2,740,945 + +3.3 2,740,945 + +2.8 2,740,950 + +2.7 2,740,950 + +2.7 2,740,951 - +2.8 2,740,953 - -0.6 2,741,036 + CCNA_02592 0.29 +1.7 2,741,044 - CCNA_02592 0.31 +0.1 2,741,054 + CCNA_02592 0.33 +3.1 2,741,054 + CCNA_02592 0.33 +1.5 2,741,055 + CCNA_02592 0.34 +1.8 2,741,082 + +1.8 2,741,082 + CCNA_02592 0.40 +2.4 2,741,090 - CCNA_02592 0.42 +0.8 2,741,090 - CCNA_02592 0.42 -3.7 2,741,090 - CCNA_02592 0.42 -1.0 2,741,090 - CCNA_02592 0.42 +1.4 2,741,154 + CCNA_02592 0.57 +2.1 2,741,162 - CCNA_02592 0.59 -1.2 2,741,172 + CCNA_02592 0.61 +2.0 2,741,174 + CCNA_02592 0.62 -0.0 2,741,182 - CCNA_02592 0.64 -0.6 2,741,189 - CCNA_02592 0.65 +0.8 2,741,214 - CCNA_02592 0.71 -2.1 2,741,235 + CCNA_02592 0.76 +1.6 2,741,381 - +2.0 2,741,431 + +0.4 2,741,438 - +0.5 2,741,445 + +1.5 2,741,445 + +1.7 2,741,453 - +0.3 2,741,471 - +2.4 2,741,535 - +0.4 2,741,545 + +0.5 2,741,575 + -0.4 2,741,618 + +0.4 2,741,626 - -0.2 2,741,630 - -1.8 2,741,672 - +2.0 2,741,709 - +1.4 2,741,712 + -2.0 2,741,712 + -0.8 2,741,712 + -1.5 2,741,720 - +1.7 2,741,720 - +1.0 2,741,720 - +2.1 2,741,720 - +1.5 2,741,786 + CCNA_02593 0.14 -0.9 2,741,824 + CCNA_02593 0.24 -0.0 2,741,863 + CCNA_02593 0.34 -0.0
Or see this region's nucleotide sequence