Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02560

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
2,705,856	-		CCNA_02558	0.76	-1.3
2,705,867	-		CCNA_02558	0.76	-0.6
2,705,874	+				+1.8
2,705,875	-		CCNA_02558	0.77	+1.0
2,705,875	-		CCNA_02558	0.77	-1.6
2,705,882	-		CCNA_02558	0.77	-1.2
2,705,902	-		CCNA_02558	0.79	-0.4
2,705,902	-		CCNA_02558	0.79	+3.8
2,705,902	-		CCNA_02558	0.79	+0.8
2,705,906	+		CCNA_02558	0.79	-0.4
2,705,909	-		CCNA_02558	0.79	-1.8
2,705,919	+		CCNA_02558	0.80	-0.4
2,705,937	-		CCNA_02558	0.81	-0.8
2,705,937	-		CCNA_02558	0.81	-2.1
2,705,937	-		CCNA_02558	0.81	-1.2
2,705,999	+		CCNA_02558	0.85	+3.4
2,705,999	+		CCNA_02558	0.85	-0.5
2,706,007	+		CCNA_02558	0.85	+2.3
2,706,007	+		CCNA_02558	0.85	+1.9
2,706,078	+		CCNA_02558	0.90	+0.7
2,706,103	+				+1.2
2,706,103	+				+0.4
2,706,111	-				-1.4
2,706,111	-				+0.8
2,706,143	-				-1.0
2,706,148	-				-0.0
2,706,178	-				-0.6
2,706,192	+				-0.7
2,706,215	-				+0.3
2,706,223	-				+0.2
2,706,296	+		CCNA_02559	0.12	+0.0
2,706,296	+		CCNA_02559	0.12	+0.2
2,706,297	+		CCNA_02559	0.12	-1.0
2,706,297	+		CCNA_02559	0.12	-0.7
2,706,297	+		CCNA_02559	0.12	-0.1
2,706,304	-		CCNA_02559	0.14	-1.4
2,706,305	-		CCNA_02559	0.14	+0.3
2,706,305	-		CCNA_02559	0.14	-1.2
2,706,329	+		CCNA_02559	0.19	+0.3
2,706,337	-		CCNA_02559	0.20	-2.1
2,706,337	-		CCNA_02559	0.20	-0.7
2,706,345	+		CCNA_02559	0.22	+2.0
2,706,365	-		CCNA_02559	0.26	+2.2
2,706,406	-		CCNA_02559	0.34	-1.1
2,706,406	-		CCNA_02559	0.34	-0.6
2,706,441	+		CCNA_02559	0.41	-0.8
2,706,484	-		CCNA_02559	0.50	-1.1
2,706,484	-		CCNA_02559	0.50	-0.4
2,706,511	-		CCNA_02559	0.56	-0.0
2,706,511	-		CCNA_02559	0.56	+1.2
2,706,522	-		CCNA_02559	0.58	+0.4
2,706,562	-		CCNA_02559	0.66	+1.4
2,706,623	+		CCNA_02559	0.78	+2.8
2,706,623	+		CCNA_02559	0.78	+0.4
2,706,631	-		CCNA_02559	0.80	-0.2
2,706,631	-		CCNA_02559	0.80	-0.2
2,706,696	+				-2.7
2,706,698	+				+0.3
2,706,698	+				-1.2
2,706,706	-				+1.6
2,706,709	-				+2.4
2,706,711	-				+0.9
2,706,845	+				+1.6
2,706,853	-				+2.7
2,706,890	+				+0.0
2,706,925	-		CCNA_02560	0.11	+1.7
2,706,930	-		CCNA_02560	0.12	+2.0
2,706,962	+		CCNA_02560	0.17	+0.8
2,706,970	-		CCNA_02560	0.18	+2.2
2,706,970	-		CCNA_02560	0.18	+2.7
2,706,970	-		CCNA_02560	0.18	+5.1
2,706,970	-		CCNA_02560	0.18	+2.6
2,706,970	-		CCNA_02560	0.18	+2.3
2,706,971	-		CCNA_02560	0.18	+2.8
2,707,041	+		CCNA_02560	0.29	-0.0
2,707,054	-		CCNA_02560	0.31	+2.6
2,707,070	+		CCNA_02560	0.34	-1.0
2,707,078	-		CCNA_02560	0.35	+2.5
2,707,078	-		CCNA_02560	0.35	+2.3
2,707,082	+		CCNA_02560	0.36	+0.8
2,707,103	+		CCNA_02560	0.39	-1.0
2,707,143	+		CCNA_02560	0.45	-1.7
2,707,151	-		CCNA_02560	0.46	+1.5
2,707,151	-		CCNA_02560	0.46	+3.4
2,707,171	-		CCNA_02560	0.50	+3.0
2,707,174	+		CCNA_02560	0.50	+1.0
2,707,174	+		CCNA_02560	0.50	-1.1
2,707,182	-		CCNA_02560	0.51	+2.4
2,707,184	+		CCNA_02560	0.52	+1.0
2,707,189	+		CCNA_02560	0.52	-1.2
2,707,189	+		CCNA_02560	0.52	+1.4
2,707,189	+		CCNA_02560	0.52	+0.3
2,707,189	+		CCNA_02560	0.52	-0.4
2,707,192	-		CCNA_02560	0.53	+2.9
2,707,192	-		CCNA_02560	0.53	+2.6
2,707,197	-		CCNA_02560	0.54	+0.9
2,707,197	-		CCNA_02560	0.54	+2.9
2,707,197	-		CCNA_02560	0.54	+3.1
2,707,197	-		CCNA_02560	0.54	+2.1
2,707,197	-		CCNA_02560	0.54	+3.4
2,707,199	+		CCNA_02560	0.54	-1.2
2,707,199	+		CCNA_02560	0.54	-1.3
2,707,199	+		CCNA_02560	0.54	+0.8
2,707,240	-		CCNA_02560	0.60	+2.5
2,707,317	+		CCNA_02560	0.72	-0.7
2,707,318	-		CCNA_02560	0.73	+1.1
2,707,318	-		CCNA_02560	0.73	+1.2
2,707,318	-		CCNA_02560	0.73	+2.3
2,707,358	+		CCNA_02560	0.79	+0.2
2,707,361	-		CCNA_02560	0.79	+0.2
2,707,361	-		CCNA_02560	0.79	+1.5
2,707,361	-		CCNA_02560	0.79	+1.9
2,707,405	+		CCNA_02560	0.86	-0.2
2,707,407	+		CCNA_02560	0.87	+0.2
2,707,407	+		CCNA_02560	0.87	-0.8
2,707,408	-		CCNA_02560	0.87	+1.0
2,707,408	-		CCNA_02560	0.87	+3.3
2,707,415	-		CCNA_02560	0.88	+3.3
2,707,415	-		CCNA_02560	0.88	+0.3
2,707,415	-		CCNA_02560	0.88	+1.8
2,707,415	-		CCNA_02560	0.88	+4.0
2,707,415	-		CCNA_02560	0.88	+1.0
2,707,428	+		CCNA_02560	0.90	+1.2
2,707,430	+				+0.8
2,707,430	+				-2.6
2,707,436	-				+1.4
2,707,456	+				+2.8
2,707,480	-				+0.8
2,707,480	-				+3.4
2,707,482	+				-0.2
2,707,512	-				+1.6
2,707,512	-				+2.2
2,707,563	+				-0.4
2,707,601	+				+0.4
2,707,601	+				-1.3
2,707,609	-				+3.4
2,707,633	+		CCNA_02561	0.10	+0.8
2,707,651	-		CCNA_02561	0.11	+1.9
2,707,699	-		CCNA_02561	0.15	+0.4
2,707,703	+		CCNA_02561	0.15	-1.4
2,707,703	+		CCNA_02561	0.15	-0.4
2,707,711	-		CCNA_02561	0.16	+3.1
2,707,724	+		CCNA_02561	0.16	-0.2
2,707,724	+		CCNA_02561	0.16	+1.8
2,707,725	+		CCNA_02561	0.17	-0.8
2,707,747	+		CCNA_02561	0.18	+0.2
2,707,755	-		CCNA_02561	0.19	+1.8
2,707,755	-		CCNA_02561	0.19	+1.4
2,707,765	-		CCNA_02561	0.19	+1.4
2,707,777	-		CCNA_02561	0.20	+2.1
2,707,847	+		CCNA_02561	0.25	+0.8
2,707,868	+		CCNA_02561	0.27	-0.6
2,707,868	+		CCNA_02561	0.27	+0.8
2,707,876	-		CCNA_02561	0.27	-0.9
2,707,880	+		CCNA_02561	0.27	-0.0
2,707,888	-		CCNA_02561	0.28	+1.4
2,707,888	-		CCNA_02561	0.28	+2.5
2,707,896	+		CCNA_02561	0.29	+1.2
2,707,946	-		CCNA_02561	0.32	+1.2
2,708,020	-		CCNA_02561	0.37	+1.5
2,708,026	-		CCNA_02561	0.38	+2.4
2,708,039	-		CCNA_02561	0.39	+2.1
2,708,216	+		CCNA_02561	0.51	+1.2
2,708,251	-		CCNA_02561	0.53	+2.2
2,708,256	-		CCNA_02561	0.54	+2.1
2,708,256	-		CCNA_02561	0.54	+1.3
2,708,259	+		CCNA_02561	0.54	-0.7
2,708,277	-		CCNA_02561	0.55	+1.8
2,708,364	-		CCNA_02561	0.61	+1.3
2,708,366	+		CCNA_02561	0.62	+1.8
2,708,397	-		CCNA_02561	0.64	+2.4
2,708,406	-		CCNA_02561	0.64	+2.8
2,708,406	-		CCNA_02561	0.64	+3.6
2,708,406	-		CCNA_02561	0.64	+2.0
2,708,435	+		CCNA_02561	0.66	+1.2
2,708,435	+		CCNA_02561	0.66	+0.1