Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02517

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02516 and CCNA_02517 are separated by 197 nucleotidesCCNA_02517 and CCNA_02518 are separated by 67 nucleotides CCNA_02516: CCNA_02516 - glutathione S-transferase, at 2,666,167 to 2,666,892 _02516 CCNA_02517: CCNA_02517 - hypothetical protein, at 2,667,090 to 2,667,611 _02517 CCNA_02518: CCNA_02518 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 2,667,679 to 2,669,175 _02518 Position (kb) 2667 2668Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2666.158 kb on - strandat 2666.193 kb on - strandat 2666.203 kb on - strandat 2666.224 kb on + strandat 2666.232 kb on - strandat 2666.259 kb on + strand, within CCNA_02516at 2666.267 kb on - strand, within CCNA_02516at 2666.267 kb on - strand, within CCNA_02516at 2666.267 kb on - strand, within CCNA_02516at 2666.277 kb on - strand, within CCNA_02516at 2666.303 kb on + strand, within CCNA_02516at 2666.303 kb on + strand, within CCNA_02516at 2666.309 kb on + strand, within CCNA_02516at 2666.311 kb on - strand, within CCNA_02516at 2666.317 kb on - strand, within CCNA_02516at 2666.317 kb on - strand, within CCNA_02516at 2666.349 kb on - strand, within CCNA_02516at 2666.363 kb on + strand, within CCNA_02516at 2666.419 kb on + strand, within CCNA_02516at 2666.419 kb on + strand, within CCNA_02516at 2666.421 kb on + strand, within CCNA_02516at 2666.425 kb on - strand, within CCNA_02516at 2666.429 kb on - strand, within CCNA_02516at 2666.429 kb on - strand, within CCNA_02516at 2666.442 kb on - strand, within CCNA_02516at 2666.458 kb on + strand, within CCNA_02516at 2666.463 kb on + strand, within CCNA_02516at 2666.481 kb on + strand, within CCNA_02516at 2666.519 kb on + strand, within CCNA_02516at 2666.558 kb on + strand, within CCNA_02516at 2666.558 kb on + strand, within CCNA_02516at 2666.590 kb on - strand, within CCNA_02516at 2666.600 kb on - strand, within CCNA_02516at 2666.600 kb on - strand, within CCNA_02516at 2666.600 kb on - strand, within CCNA_02516at 2666.632 kb on - strand, within CCNA_02516at 2666.632 kb on - strand, within CCNA_02516at 2666.632 kb on - strand, within CCNA_02516at 2666.632 kb on - strand, within CCNA_02516at 2666.637 kb on - strand, within CCNA_02516at 2666.656 kb on + strand, within CCNA_02516at 2666.758 kb on - strand, within CCNA_02516at 2666.762 kb on + strand, within CCNA_02516at 2666.762 kb on + strand, within CCNA_02516at 2666.762 kb on + strand, within CCNA_02516at 2666.770 kb on - strand, within CCNA_02516at 2666.770 kb on - strand, within CCNA_02516at 2666.770 kb on - strand, within CCNA_02516at 2666.791 kb on - strand, within CCNA_02516at 2666.804 kb on - strand, within CCNA_02516at 2666.809 kb on + strand, within CCNA_02516at 2666.812 kb on - strand, within CCNA_02516at 2666.822 kb on - strandat 2666.869 kb on - strandat 2666.896 kb on - strandat 2666.981 kb on + strandat 2666.989 kb on - strandat 2666.995 kb on + strandat 2667.005 kb on - strandat 2667.005 kb on - strandat 2667.018 kb on - strandat 2667.023 kb on + strandat 2667.023 kb on + strandat 2667.052 kb on + strandat 2667.060 kb on + strandat 2667.060 kb on + strandat 2667.060 kb on - strandat 2667.068 kb on - strandat 2667.071 kb on + strandat 2667.144 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.216 kb on + strand, within CCNA_02517at 2667.285 kb on + strand, within CCNA_02517at 2667.312 kb on - strand, within CCNA_02517at 2667.321 kb on - strand, within CCNA_02517at 2667.354 kb on + strand, within CCNA_02517at 2667.368 kb on + strand, within CCNA_02517at 2667.450 kb on - strand, within CCNA_02517at 2667.460 kb on - strand, within CCNA_02517at 2667.501 kb on - strand, within CCNA_02517at 2667.579 kb on + strandat 2667.587 kb on - strandat 2667.594 kb on - strandat 2667.650 kb on - strandat 2667.659 kb on + strandat 2667.660 kb on - strandat 2667.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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2,666,158 - +2.9
2,666,193 - +0.5
2,666,203 - +1.9
2,666,224 + +0.7
2,666,232 - +0.7
2,666,259 + CCNA_02516 0.13 +1.7
2,666,267 - CCNA_02516 0.14 -0.6
2,666,267 - CCNA_02516 0.14 +0.5
2,666,267 - CCNA_02516 0.14 +0.5
2,666,277 - CCNA_02516 0.15 -1.6
2,666,303 + CCNA_02516 0.19 -1.1
2,666,303 + CCNA_02516 0.19 -0.6
2,666,309 + CCNA_02516 0.20 -0.9
2,666,311 - CCNA_02516 0.20 +1.1
2,666,317 - CCNA_02516 0.21 -3.8
2,666,317 - CCNA_02516 0.21 -1.0
2,666,349 - CCNA_02516 0.25 -0.3
2,666,363 + CCNA_02516 0.27 +0.4
2,666,419 + CCNA_02516 0.35 +1.7
2,666,419 + CCNA_02516 0.35 +0.1
2,666,421 + CCNA_02516 0.35 -0.1
2,666,425 - CCNA_02516 0.36 +0.9
2,666,429 - CCNA_02516 0.36 +1.1
2,666,429 - CCNA_02516 0.36 -0.0
2,666,442 - CCNA_02516 0.38 -1.3
2,666,458 + CCNA_02516 0.40 -1.4
2,666,463 + CCNA_02516 0.41 +0.1
2,666,481 + CCNA_02516 0.43 +2.7
2,666,519 + CCNA_02516 0.48 +0.7
2,666,558 + CCNA_02516 0.54 +1.1
2,666,558 + CCNA_02516 0.54 -0.3
2,666,590 - CCNA_02516 0.58 -0.5
2,666,600 - CCNA_02516 0.60 -0.4
2,666,600 - CCNA_02516 0.60 -0.6
2,666,600 - CCNA_02516 0.60 +0.4
2,666,632 - CCNA_02516 0.64 +1.2
2,666,632 - CCNA_02516 0.64 -0.2
2,666,632 - CCNA_02516 0.64 +1.1
2,666,632 - CCNA_02516 0.64 -0.5
2,666,637 - CCNA_02516 0.65 -1.8
2,666,656 + CCNA_02516 0.67 +1.1
2,666,758 - CCNA_02516 0.81 -1.7
2,666,762 + CCNA_02516 0.82 -0.6
2,666,762 + CCNA_02516 0.82 +0.1
2,666,762 + CCNA_02516 0.82 -0.6
2,666,770 - CCNA_02516 0.83 -2.5
2,666,770 - CCNA_02516 0.83 -1.1
2,666,770 - CCNA_02516 0.83 -1.7
2,666,791 - CCNA_02516 0.86 +0.7
2,666,804 - CCNA_02516 0.88 +1.7
2,666,809 + CCNA_02516 0.88 +0.4
2,666,812 - CCNA_02516 0.89 -1.7
2,666,822 - +1.7
2,666,869 - -2.3
2,666,896 - +1.1
2,666,981 + -0.6
2,666,989 - +1.1
2,666,995 + -1.1
2,667,005 - -0.1
2,667,005 - -1.1
2,667,018 - +1.1
2,667,023 + +1.1
2,667,023 + +2.7
2,667,052 + +0.4
2,667,060 + +1.1
2,667,060 + +0.9
2,667,060 - -2.1
2,667,068 - +0.5
2,667,071 + -1.9
2,667,144 + CCNA_02517 0.10 -0.1
2,667,168 + CCNA_02517 0.15 -0.5
2,667,168 + CCNA_02517 0.15 +2.3
2,667,168 + CCNA_02517 0.15 -1.0
2,667,168 + CCNA_02517 0.15 +0.7
2,667,176 - CCNA_02517 0.16 -2.3
2,667,176 - CCNA_02517 0.16 +1.2
2,667,176 - CCNA_02517 0.16 -1.8
2,667,176 - CCNA_02517 0.16 -2.0
2,667,176 - CCNA_02517 0.16 -1.1
2,667,176 - CCNA_02517 0.16 -0.3
2,667,216 + CCNA_02517 0.24 -1.1
2,667,285 + CCNA_02517 0.37 -1.3
2,667,312 - CCNA_02517 0.43 -1.6
2,667,321 - CCNA_02517 0.44 +0.4
2,667,354 + CCNA_02517 0.51 +1.7
2,667,368 + CCNA_02517 0.53 -0.8
2,667,450 - CCNA_02517 0.69 +1.1
2,667,460 - CCNA_02517 0.71 +1.1
2,667,501 - CCNA_02517 0.79 -0.0
2,667,579 + -0.4
2,667,587 - -0.6
2,667,594 - +0.4
2,667,650 - +2.8
2,667,659 + +2.4
2,667,660 - +3.3
2,667,664 + -0.1

Or see this region's nucleotide sequence