Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02421

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02419 and CCNA_02420 are separated by 10 nucleotidesCCNA_02420 and CCNA_02421 are separated by 5 nucleotidesCCNA_02421 and CCNA_02422 are separated by 913 nucleotides CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281 _02419 CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726 _02420 CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640 _02421 CCNA_02422: CCNA_02422 - short chain dehydrogenase, at 2,566,554 to 2,567,381 _02422 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2563.734 kb on + strand, within CCNA_02419at 2563.780 kb on + strand, within CCNA_02419at 2563.785 kb on + strand, within CCNA_02419at 2563.793 kb on - strand, within CCNA_02419at 2563.802 kb on + strand, within CCNA_02419at 2563.810 kb on - strand, within CCNA_02419at 2563.895 kb on - strand, within CCNA_02419at 2564.081 kb on + strand, within CCNA_02419at 2564.235 kb on - strandat 2564.303 kb on + strandat 2564.308 kb on + strandat 2564.668 kb on + strand, within CCNA_02420at 2565.640 kb on + strandat 2565.661 kb on + strandat 2565.706 kb on + strandat 2565.711 kb on + strandat 2565.711 kb on + strandat 2565.711 kb on + strandat 2565.711 kb on + strandat 2565.719 kb on - strandat 2565.735 kb on + strandat 2565.754 kb on - strandat 2565.794 kb on - strandat 2565.817 kb on + strandat 2565.817 kb on + strandat 2565.843 kb on + strandat 2565.859 kb on - strandat 2566.107 kb on - strandat 2566.177 kb on + strandat 2566.234 kb on + strandat 2566.252 kb on + strandat 2566.331 kb on - strandat 2566.373 kb on + strandat 2566.381 kb on - strandat 2566.418 kb on - strandat 2566.432 kb on - strandat 2566.457 kb on - strandat 2566.469 kb on - strandat 2566.519 kb on + strandat 2566.531 kb on + strandat 2566.573 kb on + strandat 2566.573 kb on - strandat 2566.578 kb on + strandat 2566.586 kb on - strandat 2566.591 kb on - strandat 2566.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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2,563,734 + CCNA_02419 0.25 +1.6
2,563,780 + CCNA_02419 0.31 +1.1
2,563,785 + CCNA_02419 0.32 -0.7
2,563,793 - CCNA_02419 0.33 +2.5
2,563,802 + CCNA_02419 0.34 -1.2
2,563,810 - CCNA_02419 0.36 +2.5
2,563,895 - CCNA_02419 0.47 +2.9
2,564,081 + CCNA_02419 0.73 +1.6
2,564,235 - +2.1
2,564,303 + -2.7
2,564,308 + +0.3
2,564,668 + CCNA_02420 0.86 +1.2
2,565,640 + -1.4
2,565,661 + +0.1
2,565,706 + +0.1
2,565,711 + +1.6
2,565,711 + +0.6
2,565,711 + +0.1
2,565,711 + -2.2
2,565,719 - +2.2
2,565,735 + -0.2
2,565,754 - -0.5
2,565,794 - +0.8
2,565,817 + -0.8
2,565,817 + +0.6
2,565,843 + -1.1
2,565,859 - +1.2
2,566,107 - -0.1
2,566,177 + -1.3
2,566,234 + -0.4
2,566,252 + -1.4
2,566,331 - +0.6
2,566,373 + +1.6
2,566,381 - -0.8
2,566,418 - -1.8
2,566,432 - +0.6
2,566,457 - +0.5
2,566,469 - +1.6
2,566,519 + +0.1
2,566,531 + +1.6
2,566,573 + +1.6
2,566,573 - +2.6
2,566,578 + -1.4
2,566,586 - +1.6
2,566,591 - +0.7
2,566,596 - +2.6

Or see this region's nucleotide sequence