Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02419 and CCNA_02420 are separated by 10 nucleotides CCNA_02420 and CCNA_02421 are separated by 5 nucleotides CCNA_02421 and CCNA_02422 are separated by 913 nucleotides
CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281
_02419
CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726
_02420
CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640
_02421
CCNA_02422: CCNA_02422 - short chain dehydrogenase, at 2,566,554 to 2,567,381
_02422
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2563.734 kb on + strand, within CCNA_02419 at 2563.780 kb on + strand, within CCNA_02419 at 2563.785 kb on + strand, within CCNA_02419 at 2563.793 kb on - strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.810 kb on - strand, within CCNA_02419 at 2563.895 kb on - strand, within CCNA_02419 at 2564.081 kb on + strand, within CCNA_02419 at 2564.235 kb on - strand at 2564.303 kb on + strand at 2564.308 kb on + strand at 2564.668 kb on + strand, within CCNA_02420 at 2565.640 kb on + strand at 2565.661 kb on + strand at 2565.706 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.719 kb on - strand at 2565.735 kb on + strand at 2565.754 kb on - strand at 2565.794 kb on - strand at 2565.817 kb on + strand at 2565.817 kb on + strand at 2565.843 kb on + strand at 2565.859 kb on - strand at 2566.107 kb on - strand at 2566.177 kb on + strand at 2566.234 kb on + strand at 2566.252 kb on + strand at 2566.331 kb on - strand at 2566.373 kb on + strand at 2566.381 kb on - strand at 2566.418 kb on - strand at 2566.432 kb on - strand at 2566.457 kb on - strand at 2566.469 kb on - strand at 2566.519 kb on + strand at 2566.531 kb on + strand at 2566.573 kb on + strand at 2566.573 kb on - strand at 2566.578 kb on + strand at 2566.586 kb on - strand at 2566.591 kb on - strand at 2566.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,563,734 + CCNA_02419 0.25 +1.6 2,563,780 + CCNA_02419 0.31 +1.1 2,563,785 + CCNA_02419 0.32 -0.7 2,563,793 - CCNA_02419 0.33 +2.5 2,563,802 + CCNA_02419 0.34 -1.2 2,563,810 - CCNA_02419 0.36 +2.5 2,563,895 - CCNA_02419 0.47 +2.9 2,564,081 + CCNA_02419 0.73 +1.6 2,564,235 - +2.1 2,564,303 + -2.7 2,564,308 + +0.3 2,564,668 + CCNA_02420 0.86 +1.2 2,565,640 + -1.4 2,565,661 + +0.1 2,565,706 + +0.1 2,565,711 + +1.6 2,565,711 + +0.6 2,565,711 + +0.1 2,565,711 + -2.2 2,565,719 - +2.2 2,565,735 + -0.2 2,565,754 - -0.5 2,565,794 - +0.8 2,565,817 + -0.8 2,565,817 + +0.6 2,565,843 + -1.1 2,565,859 - +1.2 2,566,107 - -0.1 2,566,177 + -1.3 2,566,234 + -0.4 2,566,252 + -1.4 2,566,331 - +0.6 2,566,373 + +1.6 2,566,381 - -0.8 2,566,418 - -1.8 2,566,432 - +0.6 2,566,457 - +0.5 2,566,469 - +1.6 2,566,519 + +0.1 2,566,531 + +1.6 2,566,573 + +1.6 2,566,573 - +2.6 2,566,578 + -1.4 2,566,586 - +1.6 2,566,591 - +0.7 2,566,596 - +2.6
Or see this region's nucleotide sequence