Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02294 and CCNA_02295 overlap by 22 nucleotides CCNA_02295 and CCNA_02296 are separated by 9 nucleotides CCNA_02296 and CCNA_02297 are separated by 138 nucleotides CCNA_02297 and CCNA_02298 overlap by 59 nucleotides
CCNA_02294: CCNA_02294 - argininosuccinate lyase, at 2,441,149 to 2,442,567
_02294
CCNA_02295: CCNA_02295 - hypothetical protein, at 2,442,546 to 2,442,866
_02295
CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141
_02296
CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861
_02297
CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762
_02298
Position (kb)
2442
2443
2444
2445 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2442.561 kb on + strand at 2442.574 kb on - strand at 2442.674 kb on - strand, within CCNA_02295 at 2442.698 kb on - strand, within CCNA_02295 at 2442.705 kb on + strand, within CCNA_02295 at 2442.711 kb on + strand, within CCNA_02295 at 2442.715 kb on + strand, within CCNA_02295 at 2442.719 kb on - strand, within CCNA_02295 at 2442.719 kb on - strand, within CCNA_02295 at 2442.795 kb on + strand, within CCNA_02295 at 2442.800 kb on + strand, within CCNA_02295 at 2443.582 kb on + strand, within CCNA_02296 at 2443.715 kb on + strand, within CCNA_02296 at 2444.154 kb on - strand at 2444.202 kb on - strand at 2444.215 kb on + strand at 2444.223 kb on - strand at 2444.304 kb on - strand at 2444.387 kb on - strand, within CCNA_02297 at 2444.448 kb on - strand, within CCNA_02297 at 2444.481 kb on - strand, within CCNA_02297 at 2444.509 kb on + strand, within CCNA_02297 at 2444.578 kb on - strand, within CCNA_02297 at 2444.606 kb on + strand, within CCNA_02297 at 2444.640 kb on - strand, within CCNA_02297 at 2444.646 kb on - strand, within CCNA_02297 at 2444.650 kb on + strand, within CCNA_02297 at 2444.655 kb on + strand, within CCNA_02297 at 2444.661 kb on - strand, within CCNA_02297 at 2444.691 kb on - strand, within CCNA_02297 at 2444.697 kb on + strand, within CCNA_02297 at 2444.705 kb on - strand, within CCNA_02297 at 2444.771 kb on - strand, within CCNA_02297 at 2444.791 kb on + strand, within CCNA_02297 at 2444.837 kb on - strand at 2444.865 kb on - strand at 2444.871 kb on + strand at 2444.895 kb on + strand at 2444.954 kb on + strand, within CCNA_02298 at 2444.971 kb on + strand, within CCNA_02298 at 2445.119 kb on - strand, within CCNA_02298 at 2445.132 kb on - strand, within CCNA_02298
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,442,561 + +2.0 2,442,574 - -0.6 2,442,674 - CCNA_02295 0.40 +1.6 2,442,698 - CCNA_02295 0.47 +0.8 2,442,705 + CCNA_02295 0.50 +1.1 2,442,711 + CCNA_02295 0.51 +3.5 2,442,715 + CCNA_02295 0.53 +0.9 2,442,719 - CCNA_02295 0.54 -0.7 2,442,719 - CCNA_02295 0.54 +1.8 2,442,795 + CCNA_02295 0.78 +1.9 2,442,800 + CCNA_02295 0.79 +1.7 2,443,582 + CCNA_02296 0.56 +0.1 2,443,715 + CCNA_02296 0.66 +0.8 2,444,154 - -0.2 2,444,202 - +1.1 2,444,215 + -1.3 2,444,223 - -0.7 2,444,304 - +2.8 2,444,387 - CCNA_02297 0.18 +2.8 2,444,448 - CCNA_02297 0.29 +2.2 2,444,481 - CCNA_02297 0.35 +2.4 2,444,509 + CCNA_02297 0.39 -0.4 2,444,578 - CCNA_02297 0.51 +3.1 2,444,606 + CCNA_02297 0.56 +1.4 2,444,640 - CCNA_02297 0.62 +1.8 2,444,646 - CCNA_02297 0.63 +2.2 2,444,650 + CCNA_02297 0.64 -1.2 2,444,655 + CCNA_02297 0.64 +0.1 2,444,661 - CCNA_02297 0.65 +2.8 2,444,691 - CCNA_02297 0.71 +4.0 2,444,697 + CCNA_02297 0.72 +0.1 2,444,705 - CCNA_02297 0.73 +1.7 2,444,771 - CCNA_02297 0.84 +2.9 2,444,791 + CCNA_02297 0.88 +2.4 2,444,837 - +1.5 2,444,865 - +1.8 2,444,871 + +0.8 2,444,895 + +2.4 2,444,954 + CCNA_02298 0.16 -0.9 2,444,971 + CCNA_02298 0.17 -0.8 2,445,119 - CCNA_02298 0.33 +0.4 2,445,132 - CCNA_02298 0.34 +1.4
Or see this region's nucleotide sequence