Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02172 and CCNA_02173 overlap by 4 nucleotides CCNA_02173 and CCNA_02174 are separated by 20 nucleotides CCNA_02174 and CCNA_02175 are separated by 10 nucleotides CCNA_02175 and CCNA_02176 are separated by 14 nucleotides CCNA_02176 and CCNA_02177 are separated by 78 nucleotides
CCNA_02172: CCNA_02172 - ABC-type transporter, permease component, at 2,324,890 to 2,326,095
_02172
CCNA_02173: CCNA_02173 - ABC transporter ATP-binding protein, at 2,326,092 to 2,326,841
_02173
CCNA_02174: CCNA_02174 - multidrug resistance efflux pump, at 2,326,862 to 2,327,866
_02174
CCNA_02175: CCNA_02175 - hypothetical protein, at 2,327,877 to 2,328,401
_02175
CCNA_02176: CCNA_02176 - hypothetical protein, at 2,328,416 to 2,328,604
_02176
CCNA_02177: CCNA_02177 - hypothetical protein, at 2,328,683 to 2,328,937
_02177
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2325.864 kb on + strand, within CCNA_02172 at 2325.864 kb on + strand, within CCNA_02172 at 2325.922 kb on + strand, within CCNA_02172 at 2325.930 kb on + strand, within CCNA_02172 at 2325.938 kb on - strand, within CCNA_02172 at 2325.938 kb on - strand, within CCNA_02172 at 2325.977 kb on + strand at 2325.996 kb on - strand at 2326.025 kb on + strand at 2326.032 kb on + strand at 2326.089 kb on + strand at 2326.089 kb on + strand at 2326.089 kb on - strand at 2326.104 kb on - strand at 2326.148 kb on + strand at 2326.157 kb on + strand at 2326.157 kb on + strand at 2326.167 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.195 kb on - strand, within CCNA_02173 at 2326.195 kb on - strand, within CCNA_02173 at 2326.195 kb on - strand, within CCNA_02173 at 2326.202 kb on - strand, within CCNA_02173 at 2326.229 kb on - strand, within CCNA_02173 at 2326.319 kb on - strand, within CCNA_02173 at 2326.324 kb on + strand, within CCNA_02173 at 2326.410 kb on - strand, within CCNA_02173 at 2326.412 kb on + strand, within CCNA_02173 at 2326.434 kb on - strand, within CCNA_02173 at 2326.439 kb on + strand, within CCNA_02173 at 2326.439 kb on + strand, within CCNA_02173 at 2326.449 kb on + strand, within CCNA_02173 at 2326.465 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.546 kb on + strand, within CCNA_02173 at 2326.554 kb on - strand, within CCNA_02173 at 2326.581 kb on + strand, within CCNA_02173 at 2326.581 kb on + strand, within CCNA_02173 at 2326.616 kb on + strand, within CCNA_02173 at 2326.692 kb on + strand, within CCNA_02173 at 2326.715 kb on + strand, within CCNA_02173 at 2326.753 kb on - strand, within CCNA_02173 at 2326.814 kb on + strand at 2326.898 kb on + strand at 2326.906 kb on - strand at 2326.928 kb on + strand at 2326.954 kb on - strand at 2327.021 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.101 kb on - strand, within CCNA_02174 at 2327.137 kb on + strand, within CCNA_02174 at 2327.137 kb on + strand, within CCNA_02174 at 2327.154 kb on - strand, within CCNA_02174 at 2327.179 kb on - strand, within CCNA_02174 at 2327.197 kb on - strand, within CCNA_02174 at 2327.197 kb on - strand, within CCNA_02174 at 2327.197 kb on - strand, within CCNA_02174 at 2327.200 kb on + strand, within CCNA_02174 at 2327.202 kb on - strand, within CCNA_02174 at 2327.226 kb on + strand, within CCNA_02174 at 2327.270 kb on + strand, within CCNA_02174 at 2327.287 kb on + strand, within CCNA_02174 at 2327.349 kb on - strand, within CCNA_02174 at 2327.363 kb on + strand, within CCNA_02174 at 2327.363 kb on + strand, within CCNA_02174 at 2327.363 kb on + strand, within CCNA_02174 at 2327.371 kb on - strand, within CCNA_02174 at 2327.371 kb on - strand, within CCNA_02174 at 2327.376 kb on - strand, within CCNA_02174 at 2327.376 kb on - strand, within CCNA_02174 at 2327.396 kb on - strand, within CCNA_02174 at 2327.522 kb on - strand, within CCNA_02174 at 2327.621 kb on + strand, within CCNA_02174 at 2327.650 kb on - strand, within CCNA_02174 at 2327.650 kb on - strand, within CCNA_02174 at 2327.650 kb on - strand, within CCNA_02174 at 2327.650 kb on - strand, within CCNA_02174 at 2327.650 kb on - strand, within CCNA_02174 at 2327.650 kb on - strand, within CCNA_02174 at 2327.662 kb on + strand, within CCNA_02174 at 2327.678 kb on - strand, within CCNA_02174 at 2327.691 kb on + strand, within CCNA_02174 at 2327.691 kb on + strand, within CCNA_02174 at 2327.699 kb on - strand, within CCNA_02174 at 2327.699 kb on - strand, within CCNA_02174 at 2327.699 kb on - strand, within CCNA_02174 at 2327.734 kb on - strand, within CCNA_02174 at 2327.734 kb on - strand, within CCNA_02174 at 2327.862 kb on + strand at 2327.868 kb on - strand at 2327.889 kb on + strand at 2327.889 kb on + strand at 2327.889 kb on + strand at 2327.897 kb on - strand at 2327.900 kb on - strand at 2327.929 kb on - strand at 2327.936 kb on + strand, within CCNA_02175 at 2327.936 kb on + strand, within CCNA_02175 at 2327.944 kb on - strand, within CCNA_02175 at 2327.949 kb on + strand, within CCNA_02175 at 2327.950 kb on + strand, within CCNA_02175 at 2327.954 kb on + strand, within CCNA_02175 at 2328.003 kb on - strand, within CCNA_02175 at 2328.015 kb on - strand, within CCNA_02175 at 2328.167 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.238 kb on + strand, within CCNA_02175 at 2328.255 kb on - strand, within CCNA_02175 at 2328.328 kb on - strand, within CCNA_02175 at 2328.379 kb on - strand at 2328.402 kb on - strand at 2328.519 kb on + strand, within CCNA_02176 at 2328.541 kb on - strand, within CCNA_02176 at 2328.685 kb on - strand at 2328.685 kb on - strand at 2328.701 kb on - strand at 2328.754 kb on + strand, within CCNA_02177
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,325,864 + CCNA_02172 0.81 -1.9 2,325,864 + CCNA_02172 0.81 -0.4 2,325,922 + CCNA_02172 0.86 -3.0 2,325,930 + CCNA_02172 0.86 -2.9 2,325,938 - CCNA_02172 0.87 -1.5 2,325,938 - CCNA_02172 0.87 +0.1 2,325,977 + -1.4 2,325,996 - +0.4 2,326,025 + -3.9 2,326,032 + -3.6 2,326,089 + -1.9 2,326,089 + +0.8 2,326,089 - +2.4 2,326,104 - -3.0 2,326,148 + -3.0 2,326,157 + -3.2 2,326,157 + -3.1 2,326,167 + CCNA_02173 0.10 -2.1 2,326,187 + CCNA_02173 0.13 -4.7 2,326,187 + CCNA_02173 0.13 -0.9 2,326,187 + CCNA_02173 0.13 -4.2 2,326,187 + CCNA_02173 0.13 -4.3 2,326,187 + CCNA_02173 0.13 -3.6 2,326,195 - CCNA_02173 0.14 +1.4 2,326,195 - CCNA_02173 0.14 -0.4 2,326,195 - CCNA_02173 0.14 +2.4 2,326,202 - CCNA_02173 0.15 -1.1 2,326,229 - CCNA_02173 0.18 -1.3 2,326,319 - CCNA_02173 0.30 +1.4 2,326,324 + CCNA_02173 0.31 -3.1 2,326,410 - CCNA_02173 0.42 -0.4 2,326,412 + CCNA_02173 0.43 -0.2 2,326,434 - CCNA_02173 0.46 -0.9 2,326,439 + CCNA_02173 0.46 -2.9 2,326,439 + CCNA_02173 0.46 -3.1 2,326,449 + CCNA_02173 0.48 -3.7 2,326,465 + CCNA_02173 0.50 -2.3 2,326,519 + CCNA_02173 0.57 -4.1 2,326,519 + CCNA_02173 0.57 -2.5 2,326,519 + CCNA_02173 0.57 -0.2 2,326,519 + CCNA_02173 0.57 -3.7 2,326,519 + CCNA_02173 0.57 -1.6 2,326,519 + CCNA_02173 0.57 -1.6 2,326,519 + CCNA_02173 0.57 -4.3 2,326,527 - CCNA_02173 0.58 -0.8 2,326,527 - CCNA_02173 0.58 -2.6 2,326,527 - CCNA_02173 0.58 -3.5 2,326,527 - CCNA_02173 0.58 -1.8 2,326,527 - CCNA_02173 0.58 -3.0 2,326,527 - +0.8 2,326,527 - CCNA_02173 0.58 -5.3 2,326,527 - CCNA_02173 0.58 -2.8 2,326,546 + CCNA_02173 0.61 -2.5 2,326,554 - CCNA_02173 0.62 -1.1 2,326,581 + CCNA_02173 0.65 -3.2 2,326,581 + CCNA_02173 0.65 -0.6 2,326,616 + CCNA_02173 0.70 -3.8 2,326,692 + CCNA_02173 0.80 -3.2 2,326,715 + CCNA_02173 0.83 -3.7 2,326,753 - CCNA_02173 0.88 -0.4 2,326,814 + -3.4 2,326,898 + -1.2 2,326,906 - -0.8 2,326,928 + -1.8 2,326,954 - -1.7 2,327,021 + CCNA_02174 0.16 -3.0 2,327,026 + CCNA_02174 0.16 -3.6 2,327,026 + CCNA_02174 0.16 -2.6 2,327,026 + CCNA_02174 0.16 -3.6 2,327,026 + CCNA_02174 0.16 -2.9 2,327,026 + CCNA_02174 0.16 -2.7 2,327,026 + CCNA_02174 0.16 -4.0 2,327,026 + CCNA_02174 0.16 -4.6 2,327,026 + CCNA_02174 0.16 -3.2 2,327,034 - CCNA_02174 0.17 -0.4 2,327,034 - CCNA_02174 0.17 -0.9 2,327,034 - CCNA_02174 0.17 +0.4 2,327,034 - CCNA_02174 0.17 -1.0 2,327,034 - CCNA_02174 0.17 +0.1 2,327,101 - CCNA_02174 0.24 -0.4 2,327,137 + CCNA_02174 0.27 -3.6 2,327,137 + CCNA_02174 0.27 -2.9 2,327,154 - CCNA_02174 0.29 +0.4 2,327,179 - CCNA_02174 0.32 -2.0 2,327,197 - CCNA_02174 0.33 -1.3 2,327,197 - CCNA_02174 0.33 -1.1 2,327,197 - CCNA_02174 0.33 -2.3 2,327,200 + CCNA_02174 0.34 -3.4 2,327,202 - CCNA_02174 0.34 +2.4 2,327,226 + CCNA_02174 0.36 -0.9 2,327,270 + CCNA_02174 0.41 -2.9 2,327,287 + CCNA_02174 0.42 -2.8 2,327,349 - CCNA_02174 0.48 -1.5 2,327,363 + CCNA_02174 0.50 -3.3 2,327,363 + CCNA_02174 0.50 -3.7 2,327,363 + CCNA_02174 0.50 -3.9 2,327,371 - CCNA_02174 0.51 -0.2 2,327,371 - CCNA_02174 0.51 -0.6 2,327,376 - CCNA_02174 0.51 -2.2 2,327,376 - CCNA_02174 0.51 +0.1 2,327,396 - CCNA_02174 0.53 -1.5 2,327,522 - CCNA_02174 0.66 -1.8 2,327,621 + CCNA_02174 0.76 -4.7 2,327,650 - CCNA_02174 0.78 -0.2 2,327,650 - CCNA_02174 0.78 +0.2 2,327,650 - CCNA_02174 0.78 -0.9 2,327,650 - CCNA_02174 0.78 -2.2 2,327,650 - CCNA_02174 0.78 -2.7 2,327,650 - CCNA_02174 0.78 +0.1 2,327,662 + CCNA_02174 0.80 -2.0 2,327,678 - CCNA_02174 0.81 +0.8 2,327,691 + CCNA_02174 0.82 -5.0 2,327,691 + CCNA_02174 0.82 -2.4 2,327,699 - CCNA_02174 0.83 -1.3 2,327,699 - CCNA_02174 0.83 -0.4 2,327,699 - CCNA_02174 0.83 -1.2 2,327,734 - CCNA_02174 0.87 -3.7 2,327,734 - CCNA_02174 0.87 -1.1 2,327,862 + +2.5 2,327,868 - +0.7 2,327,889 + +0.4 2,327,889 + +2.3 2,327,889 + +2.1 2,327,897 - -0.2 2,327,900 - +0.4 2,327,929 - -0.4 2,327,936 + CCNA_02175 0.11 +1.7 2,327,936 + CCNA_02175 0.11 +0.9 2,327,944 - CCNA_02175 0.13 -1.9 2,327,949 + CCNA_02175 0.14 -0.5 2,327,950 + CCNA_02175 0.14 +1.1 2,327,954 + CCNA_02175 0.15 +1.5 2,328,003 - CCNA_02175 0.24 -1.3 2,328,015 - CCNA_02175 0.26 -1.4 2,328,167 + CCNA_02175 0.55 +2.4 2,328,189 + CCNA_02175 0.59 -1.7 2,328,189 + CCNA_02175 0.59 -1.1 2,328,189 + CCNA_02175 0.59 +0.7 2,328,197 - CCNA_02175 0.61 -0.9 2,328,197 - CCNA_02175 0.61 -1.1 2,328,197 - CCNA_02175 0.61 -1.7 2,328,238 + CCNA_02175 0.69 +0.4 2,328,255 - CCNA_02175 0.72 -0.6 2,328,328 - CCNA_02175 0.86 -0.8 2,328,379 - -0.6 2,328,402 - -0.3 2,328,519 + CCNA_02176 0.54 +1.1 2,328,541 - CCNA_02176 0.66 +0.1 2,328,685 - +1.4 2,328,685 - -0.9 2,328,701 - -1.3 2,328,754 + CCNA_02177 0.28 -1.8
Or see this region's nucleotide sequence