Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02171 and CCNA_02172 are separated by 309 nucleotides CCNA_02172 and CCNA_02173 overlap by 4 nucleotides CCNA_02173 and CCNA_02174 are separated by 20 nucleotides
CCNA_02171: CCNA_02171 - nucleoside permease nupC, at 2,323,300 to 2,324,580
_02171
CCNA_02172: CCNA_02172 - ABC-type transporter, permease component, at 2,324,890 to 2,326,095
_02172
CCNA_02173: CCNA_02173 - ABC transporter ATP-binding protein, at 2,326,092 to 2,326,841
_02173
CCNA_02174: CCNA_02174 - multidrug resistance efflux pump, at 2,326,862 to 2,327,866
_02174
Position (kb)
2324
2325
2326
2327 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2323.938 kb on - strand, within CCNA_02171 at 2323.939 kb on + strand, within CCNA_02171 at 2323.958 kb on + strand, within CCNA_02171 at 2323.963 kb on + strand, within CCNA_02171 at 2323.963 kb on + strand, within CCNA_02171 at 2323.983 kb on - strand, within CCNA_02171 at 2323.988 kb on - strand, within CCNA_02171 at 2323.988 kb on - strand, within CCNA_02171 at 2323.993 kb on + strand, within CCNA_02171 at 2324.016 kb on - strand, within CCNA_02171 at 2324.029 kb on - strand, within CCNA_02171 at 2324.041 kb on + strand, within CCNA_02171 at 2324.044 kb on + strand, within CCNA_02171 at 2324.049 kb on - strand, within CCNA_02171 at 2324.089 kb on + strand, within CCNA_02171 at 2324.104 kb on - strand, within CCNA_02171 at 2324.126 kb on + strand, within CCNA_02171 at 2324.131 kb on + strand, within CCNA_02171 at 2324.179 kb on + strand, within CCNA_02171 at 2324.185 kb on + strand, within CCNA_02171 at 2324.185 kb on + strand at 2324.188 kb on - strand, within CCNA_02171 at 2324.226 kb on - strand, within CCNA_02171 at 2324.245 kb on - strand, within CCNA_02171 at 2324.252 kb on - strand, within CCNA_02171 at 2324.252 kb on - strand, within CCNA_02171 at 2324.314 kb on - strand, within CCNA_02171 at 2324.314 kb on - strand, within CCNA_02171 at 2324.314 kb on - strand, within CCNA_02171 at 2324.314 kb on - strand, within CCNA_02171 at 2324.314 kb on - strand, within CCNA_02171 at 2324.355 kb on - strand, within CCNA_02171 at 2324.356 kb on + strand, within CCNA_02171 at 2324.356 kb on + strand, within CCNA_02171 at 2324.370 kb on - strand, within CCNA_02171 at 2324.377 kb on + strand, within CCNA_02171 at 2324.385 kb on - strand, within CCNA_02171 at 2324.385 kb on - strand, within CCNA_02171 at 2324.385 kb on - strand, within CCNA_02171 at 2324.414 kb on - strand, within CCNA_02171 at 2324.417 kb on + strand, within CCNA_02171 at 2324.425 kb on - strand, within CCNA_02171 at 2324.446 kb on - strand, within CCNA_02171 at 2324.483 kb on + strand at 2324.484 kb on - strand at 2324.496 kb on - strand at 2324.526 kb on + strand at 2324.526 kb on + strand at 2324.526 kb on + strand at 2324.528 kb on + strand at 2324.529 kb on - strand at 2324.534 kb on - strand at 2324.534 kb on - strand at 2324.534 kb on - strand at 2324.534 kb on - strand at 2324.534 kb on - strand at 2324.536 kb on - strand at 2324.539 kb on + strand at 2324.547 kb on - strand at 2324.554 kb on + strand at 2324.554 kb on + strand at 2324.562 kb on - strand at 2324.592 kb on - strand at 2324.624 kb on + strand at 2324.624 kb on + strand at 2324.645 kb on - strand at 2324.649 kb on + strand at 2324.692 kb on - strand at 2324.718 kb on + strand at 2324.718 kb on + strand at 2324.719 kb on - strand at 2324.730 kb on - strand at 2324.785 kb on - strand at 2324.815 kb on + strand at 2324.845 kb on + strand at 2324.853 kb on - strand at 2324.874 kb on + strand at 2324.902 kb on - strand at 2324.950 kb on + strand at 2324.968 kb on + strand at 2324.985 kb on + strand at 2325.012 kb on + strand, within CCNA_02172 at 2325.020 kb on - strand, within CCNA_02172 at 2325.022 kb on + strand, within CCNA_02172 at 2325.079 kb on + strand, within CCNA_02172 at 2325.079 kb on + strand, within CCNA_02172 at 2325.088 kb on + strand, within CCNA_02172 at 2325.089 kb on - strand, within CCNA_02172 at 2325.110 kb on + strand, within CCNA_02172 at 2325.123 kb on + strand, within CCNA_02172 at 2325.123 kb on + strand, within CCNA_02172 at 2325.131 kb on - strand, within CCNA_02172 at 2325.143 kb on - strand, within CCNA_02172 at 2325.157 kb on + strand, within CCNA_02172 at 2325.210 kb on + strand, within CCNA_02172 at 2325.215 kb on + strand, within CCNA_02172 at 2325.218 kb on - strand, within CCNA_02172 at 2325.218 kb on - strand at 2325.247 kb on + strand, within CCNA_02172 at 2325.255 kb on - strand, within CCNA_02172 at 2325.360 kb on + strand, within CCNA_02172 at 2325.360 kb on + strand, within CCNA_02172 at 2325.362 kb on - strand, within CCNA_02172 at 2325.367 kb on + strand, within CCNA_02172 at 2325.375 kb on - strand, within CCNA_02172 at 2325.378 kb on + strand, within CCNA_02172 at 2325.385 kb on - strand, within CCNA_02172 at 2325.396 kb on + strand, within CCNA_02172 at 2325.402 kb on - strand, within CCNA_02172 at 2325.414 kb on - strand, within CCNA_02172 at 2325.422 kb on + strand, within CCNA_02172 at 2325.441 kb on - strand, within CCNA_02172 at 2325.442 kb on + strand, within CCNA_02172 at 2325.491 kb on + strand, within CCNA_02172 at 2325.501 kb on + strand, within CCNA_02172 at 2325.546 kb on + strand, within CCNA_02172 at 2325.554 kb on - strand, within CCNA_02172 at 2325.590 kb on + strand, within CCNA_02172 at 2325.636 kb on + strand, within CCNA_02172 at 2325.654 kb on + strand, within CCNA_02172 at 2325.679 kb on - strand, within CCNA_02172 at 2325.730 kb on + strand, within CCNA_02172 at 2325.733 kb on - strand, within CCNA_02172 at 2325.765 kb on - strand, within CCNA_02172 at 2325.772 kb on + strand, within CCNA_02172 at 2325.772 kb on + strand, within CCNA_02172 at 2325.780 kb on - strand, within CCNA_02172 at 2325.780 kb on - strand, within CCNA_02172 at 2325.782 kb on + strand, within CCNA_02172 at 2325.782 kb on + strand, within CCNA_02172 at 2325.782 kb on + strand, within CCNA_02172 at 2325.812 kb on + strand, within CCNA_02172 at 2325.814 kb on + strand, within CCNA_02172 at 2325.847 kb on - strand, within CCNA_02172 at 2325.847 kb on - strand, within CCNA_02172 at 2325.864 kb on + strand, within CCNA_02172 at 2325.864 kb on + strand, within CCNA_02172 at 2325.922 kb on + strand, within CCNA_02172 at 2325.930 kb on + strand, within CCNA_02172 at 2325.938 kb on - strand, within CCNA_02172 at 2325.938 kb on - strand, within CCNA_02172 at 2325.977 kb on + strand at 2325.996 kb on - strand at 2326.025 kb on + strand at 2326.032 kb on + strand at 2326.089 kb on + strand at 2326.089 kb on + strand at 2326.089 kb on - strand at 2326.104 kb on - strand at 2326.148 kb on + strand at 2326.157 kb on + strand at 2326.157 kb on + strand at 2326.167 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.187 kb on + strand, within CCNA_02173 at 2326.195 kb on - strand, within CCNA_02173 at 2326.195 kb on - strand, within CCNA_02173 at 2326.195 kb on - strand, within CCNA_02173 at 2326.202 kb on - strand, within CCNA_02173 at 2326.229 kb on - strand, within CCNA_02173 at 2326.319 kb on - strand, within CCNA_02173 at 2326.324 kb on + strand, within CCNA_02173 at 2326.410 kb on - strand, within CCNA_02173 at 2326.412 kb on + strand, within CCNA_02173 at 2326.434 kb on - strand, within CCNA_02173 at 2326.439 kb on + strand, within CCNA_02173 at 2326.439 kb on + strand, within CCNA_02173 at 2326.449 kb on + strand, within CCNA_02173 at 2326.465 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.519 kb on + strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand at 2326.527 kb on - strand, within CCNA_02173 at 2326.527 kb on - strand, within CCNA_02173 at 2326.546 kb on + strand, within CCNA_02173 at 2326.554 kb on - strand, within CCNA_02173 at 2326.581 kb on + strand, within CCNA_02173 at 2326.581 kb on + strand, within CCNA_02173 at 2326.616 kb on + strand, within CCNA_02173 at 2326.692 kb on + strand, within CCNA_02173 at 2326.715 kb on + strand, within CCNA_02173 at 2326.753 kb on - strand, within CCNA_02173 at 2326.814 kb on + strand at 2326.898 kb on + strand at 2326.906 kb on - strand at 2326.928 kb on + strand at 2326.954 kb on - strand at 2327.021 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.026 kb on + strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174 at 2327.034 kb on - strand, within CCNA_02174
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,323,938 - CCNA_02171 0.50 +1.4 2,323,939 + CCNA_02171 0.50 +0.8 2,323,958 + CCNA_02171 0.51 -0.4 2,323,963 + CCNA_02171 0.52 -0.2 2,323,963 + CCNA_02171 0.52 -1.9 2,323,983 - CCNA_02171 0.53 +1.5 2,323,988 - CCNA_02171 0.54 +1.9 2,323,988 - CCNA_02171 0.54 +1.9 2,323,993 + CCNA_02171 0.54 -1.4 2,324,016 - CCNA_02171 0.56 -0.1 2,324,029 - CCNA_02171 0.57 +1.3 2,324,041 + CCNA_02171 0.58 -1.1 2,324,044 + CCNA_02171 0.58 +0.1 2,324,049 - CCNA_02171 0.58 +0.6 2,324,089 + CCNA_02171 0.62 -0.4 2,324,104 - CCNA_02171 0.63 +0.3 2,324,126 + CCNA_02171 0.64 +0.4 2,324,131 + CCNA_02171 0.65 -1.2 2,324,179 + CCNA_02171 0.69 -0.4 2,324,185 + CCNA_02171 0.69 +0.4 2,324,185 + +2.4 2,324,188 - CCNA_02171 0.69 +2.4 2,324,226 - CCNA_02171 0.72 +0.8 2,324,245 - CCNA_02171 0.74 -0.0 2,324,252 - CCNA_02171 0.74 +0.4 2,324,252 - CCNA_02171 0.74 +2.0 2,324,314 - CCNA_02171 0.79 +2.2 2,324,314 - CCNA_02171 0.79 +0.1 2,324,314 - CCNA_02171 0.79 +1.7 2,324,314 - CCNA_02171 0.79 +1.5 2,324,314 - CCNA_02171 0.79 +0.9 2,324,355 - CCNA_02171 0.82 +0.9 2,324,356 + CCNA_02171 0.82 -2.0 2,324,356 + CCNA_02171 0.82 +1.4 2,324,370 - CCNA_02171 0.84 +1.6 2,324,377 + CCNA_02171 0.84 -2.0 2,324,385 - CCNA_02171 0.85 +1.5 2,324,385 - CCNA_02171 0.85 +1.1 2,324,385 - CCNA_02171 0.85 +0.6 2,324,414 - CCNA_02171 0.87 +0.5 2,324,417 + CCNA_02171 0.87 -1.5 2,324,425 - CCNA_02171 0.88 -1.2 2,324,446 - CCNA_02171 0.89 +0.6 2,324,483 + -1.2 2,324,484 - +1.7 2,324,496 - +1.3 2,324,526 + -2.0 2,324,526 + +0.1 2,324,526 + +0.8 2,324,528 + -0.2 2,324,529 - +1.8 2,324,534 - -0.2 2,324,534 - +0.2 2,324,534 - -0.1 2,324,534 - +1.4 2,324,534 - +0.4 2,324,536 - -2.0 2,324,539 + +0.4 2,324,547 - +1.3 2,324,554 + -0.6 2,324,554 + -0.8 2,324,562 - +1.1 2,324,592 - +2.1 2,324,624 + -1.3 2,324,624 + -0.6 2,324,645 - -1.4 2,324,649 + +2.4 2,324,692 - +1.4 2,324,718 + -0.4 2,324,718 + +1.4 2,324,719 - +0.1 2,324,730 - -0.2 2,324,785 - -0.9 2,324,815 + -0.8 2,324,845 + -3.0 2,324,853 - -2.0 2,324,874 + +1.2 2,324,902 - -0.8 2,324,950 + -0.2 2,324,968 + -1.8 2,324,985 + -3.2 2,325,012 + CCNA_02172 0.10 +0.1 2,325,020 - CCNA_02172 0.11 -0.4 2,325,022 + CCNA_02172 0.11 -4.2 2,325,079 + CCNA_02172 0.16 -2.1 2,325,079 + CCNA_02172 0.16 -1.2 2,325,088 + CCNA_02172 0.16 -4.4 2,325,089 - CCNA_02172 0.17 +0.8 2,325,110 + CCNA_02172 0.18 -2.2 2,325,123 + CCNA_02172 0.19 -2.2 2,325,123 + CCNA_02172 0.19 -2.9 2,325,131 - CCNA_02172 0.20 +1.4 2,325,143 - CCNA_02172 0.21 -1.8 2,325,157 + CCNA_02172 0.22 -3.8 2,325,210 + CCNA_02172 0.27 -1.9 2,325,215 + CCNA_02172 0.27 -3.8 2,325,218 - CCNA_02172 0.27 +2.4 2,325,218 - +0.8 2,325,247 + CCNA_02172 0.30 -3.2 2,325,255 - CCNA_02172 0.30 -1.3 2,325,360 + CCNA_02172 0.39 +0.1 2,325,360 + CCNA_02172 0.39 -1.6 2,325,362 - CCNA_02172 0.39 -0.6 2,325,367 + CCNA_02172 0.40 +0.1 2,325,375 - CCNA_02172 0.40 -1.3 2,325,378 + CCNA_02172 0.40 -1.5 2,325,385 - CCNA_02172 0.41 -1.5 2,325,396 + CCNA_02172 0.42 -1.7 2,325,402 - CCNA_02172 0.42 -1.8 2,325,414 - CCNA_02172 0.43 +1.4 2,325,422 + CCNA_02172 0.44 -2.2 2,325,441 - CCNA_02172 0.46 -2.1 2,325,442 + CCNA_02172 0.46 -2.8 2,325,491 + CCNA_02172 0.50 +1.4 2,325,501 + CCNA_02172 0.51 -1.3 2,325,546 + CCNA_02172 0.54 -2.4 2,325,554 - CCNA_02172 0.55 -1.5 2,325,590 + CCNA_02172 0.58 -3.6 2,325,636 + CCNA_02172 0.62 -2.1 2,325,654 + CCNA_02172 0.63 -2.6 2,325,679 - CCNA_02172 0.65 -0.4 2,325,730 + CCNA_02172 0.70 -2.1 2,325,733 - CCNA_02172 0.70 -0.8 2,325,765 - CCNA_02172 0.73 +0.4 2,325,772 + CCNA_02172 0.73 -2.9 2,325,772 + CCNA_02172 0.73 -5.2 2,325,780 - CCNA_02172 0.74 +0.1 2,325,780 - CCNA_02172 0.74 -1.6 2,325,782 + CCNA_02172 0.74 -2.6 2,325,782 + CCNA_02172 0.74 -2.4 2,325,782 + CCNA_02172 0.74 -2.0 2,325,812 + CCNA_02172 0.76 -2.5 2,325,814 + CCNA_02172 0.77 -3.5 2,325,847 - CCNA_02172 0.79 -2.8 2,325,847 - CCNA_02172 0.79 -3.4 2,325,864 + CCNA_02172 0.81 -1.9 2,325,864 + CCNA_02172 0.81 -0.4 2,325,922 + CCNA_02172 0.86 -3.0 2,325,930 + CCNA_02172 0.86 -2.9 2,325,938 - CCNA_02172 0.87 -1.5 2,325,938 - CCNA_02172 0.87 +0.1 2,325,977 + -1.4 2,325,996 - +0.4 2,326,025 + -3.9 2,326,032 + -3.6 2,326,089 + -1.9 2,326,089 + +0.8 2,326,089 - +2.4 2,326,104 - -3.0 2,326,148 + -3.0 2,326,157 + -3.2 2,326,157 + -3.1 2,326,167 + CCNA_02173 0.10 -2.1 2,326,187 + CCNA_02173 0.13 -4.7 2,326,187 + CCNA_02173 0.13 -0.9 2,326,187 + CCNA_02173 0.13 -4.2 2,326,187 + CCNA_02173 0.13 -4.3 2,326,187 + CCNA_02173 0.13 -3.6 2,326,195 - CCNA_02173 0.14 +1.4 2,326,195 - CCNA_02173 0.14 -0.4 2,326,195 - CCNA_02173 0.14 +2.4 2,326,202 - CCNA_02173 0.15 -1.1 2,326,229 - CCNA_02173 0.18 -1.3 2,326,319 - CCNA_02173 0.30 +1.4 2,326,324 + CCNA_02173 0.31 -3.1 2,326,410 - CCNA_02173 0.42 -0.4 2,326,412 + CCNA_02173 0.43 -0.2 2,326,434 - CCNA_02173 0.46 -0.9 2,326,439 + CCNA_02173 0.46 -2.9 2,326,439 + CCNA_02173 0.46 -3.1 2,326,449 + CCNA_02173 0.48 -3.7 2,326,465 + CCNA_02173 0.50 -2.3 2,326,519 + CCNA_02173 0.57 -4.1 2,326,519 + CCNA_02173 0.57 -2.5 2,326,519 + CCNA_02173 0.57 -0.2 2,326,519 + CCNA_02173 0.57 -3.7 2,326,519 + CCNA_02173 0.57 -1.6 2,326,519 + CCNA_02173 0.57 -1.6 2,326,519 + CCNA_02173 0.57 -4.3 2,326,527 - CCNA_02173 0.58 -0.8 2,326,527 - CCNA_02173 0.58 -2.6 2,326,527 - CCNA_02173 0.58 -3.5 2,326,527 - CCNA_02173 0.58 -1.8 2,326,527 - CCNA_02173 0.58 -3.0 2,326,527 - +0.8 2,326,527 - CCNA_02173 0.58 -5.3 2,326,527 - CCNA_02173 0.58 -2.8 2,326,546 + CCNA_02173 0.61 -2.5 2,326,554 - CCNA_02173 0.62 -1.1 2,326,581 + CCNA_02173 0.65 -3.2 2,326,581 + CCNA_02173 0.65 -0.6 2,326,616 + CCNA_02173 0.70 -3.8 2,326,692 + CCNA_02173 0.80 -3.2 2,326,715 + CCNA_02173 0.83 -3.7 2,326,753 - CCNA_02173 0.88 -0.4 2,326,814 + -3.4 2,326,898 + -1.2 2,326,906 - -0.8 2,326,928 + -1.8 2,326,954 - -1.7 2,327,021 + CCNA_02174 0.16 -3.0 2,327,026 + CCNA_02174 0.16 -3.6 2,327,026 + CCNA_02174 0.16 -2.6 2,327,026 + CCNA_02174 0.16 -3.6 2,327,026 + CCNA_02174 0.16 -2.9 2,327,026 + CCNA_02174 0.16 -2.7 2,327,026 + CCNA_02174 0.16 -4.0 2,327,026 + CCNA_02174 0.16 -4.6 2,327,026 + CCNA_02174 0.16 -3.2 2,327,034 - CCNA_02174 0.17 -0.4 2,327,034 - CCNA_02174 0.17 -0.9 2,327,034 - CCNA_02174 0.17 +0.4 2,327,034 - CCNA_02174 0.17 -1.0 2,327,034 - CCNA_02174 0.17 +0.1
Or see this region's nucleotide sequence