Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01923 and CCNA_01924 are separated by 74 nucleotides CCNA_01924 and CCNA_01925 are separated by 32 nucleotides
CCNA_01923: CCNA_01923 - ATP-dependent RNA helicase, at 2,068,157 to 2,069,710
_01923
CCNA_01924: CCNA_01924 - capsular polysaccharide biosynthesis protein, at 2,069,785 to 2,070,936
_01924
CCNA_01925: CCNA_01925 - coniferyl aldehyde dehydrogenase, at 2,070,969 to 2,072,426
_01925
Position (kb)
2069
2070
2071 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2068.824 kb on - strand, within CCNA_01923 at 2068.836 kb on + strand, within CCNA_01923 at 2068.850 kb on + strand, within CCNA_01923 at 2068.857 kb on - strand, within CCNA_01923 at 2068.893 kb on - strand, within CCNA_01923 at 2068.926 kb on - strand, within CCNA_01923 at 2068.926 kb on - strand, within CCNA_01923 at 2068.958 kb on + strand, within CCNA_01923 at 2068.987 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.115 kb on + strand, within CCNA_01923 at 2069.135 kb on + strand, within CCNA_01923 at 2069.190 kb on - strand, within CCNA_01923 at 2069.194 kb on - strand, within CCNA_01923 at 2069.201 kb on - strand, within CCNA_01923 at 2069.233 kb on - strand, within CCNA_01923 at 2069.290 kb on + strand, within CCNA_01923 at 2069.311 kb on + strand, within CCNA_01923 at 2069.319 kb on - strand, within CCNA_01923 at 2069.478 kb on - strand, within CCNA_01923 at 2069.532 kb on - strand, within CCNA_01923 at 2069.538 kb on + strand, within CCNA_01923 at 2069.546 kb on - strand, within CCNA_01923 at 2069.607 kb on + strand at 2069.617 kb on - strand at 2069.626 kb on - strand at 2069.700 kb on + strand at 2069.708 kb on - strand at 2069.773 kb on + strand at 2069.778 kb on + strand at 2069.803 kb on - strand at 2069.804 kb on + strand at 2069.812 kb on - strand at 2069.861 kb on - strand at 2069.883 kb on + strand at 2069.888 kb on + strand at 2069.888 kb on + strand at 2069.891 kb on - strand at 2069.893 kb on + strand at 2069.893 kb on + strand at 2069.893 kb on + strand at 2069.893 kb on + strand at 2069.901 kb on - strand, within CCNA_01924 at 2069.901 kb on - strand, within CCNA_01924 at 2069.960 kb on + strand, within CCNA_01924 at 2069.960 kb on + strand, within CCNA_01924 at 2069.960 kb on - strand, within CCNA_01924 at 2069.976 kb on + strand, within CCNA_01924 at 2069.991 kb on + strand, within CCNA_01924 at 2069.999 kb on + strand, within CCNA_01924 at 2070.022 kb on + strand, within CCNA_01924 at 2070.098 kb on + strand, within CCNA_01924 at 2070.162 kb on + strand, within CCNA_01924 at 2070.195 kb on + strand, within CCNA_01924 at 2070.198 kb on - strand, within CCNA_01924 at 2070.286 kb on - strand, within CCNA_01924 at 2070.296 kb on - strand, within CCNA_01924 at 2070.309 kb on - strand, within CCNA_01924 at 2070.361 kb on + strand, within CCNA_01924 at 2070.370 kb on - strand, within CCNA_01924 at 2070.370 kb on - strand, within CCNA_01924 at 2070.398 kb on - strand, within CCNA_01924 at 2070.425 kb on + strand, within CCNA_01924 at 2070.442 kb on - strand, within CCNA_01924 at 2070.444 kb on + strand, within CCNA_01924 at 2070.456 kb on + strand, within CCNA_01924 at 2070.466 kb on - strand, within CCNA_01924 at 2070.474 kb on - strand, within CCNA_01924 at 2070.493 kb on + strand, within CCNA_01924 at 2070.506 kb on + strand, within CCNA_01924 at 2070.512 kb on + strand, within CCNA_01924 at 2070.512 kb on + strand, within CCNA_01924 at 2070.522 kb on + strand, within CCNA_01924 at 2070.584 kb on + strand, within CCNA_01924 at 2070.592 kb on - strand, within CCNA_01924 at 2070.601 kb on - strand, within CCNA_01924 at 2070.603 kb on + strand, within CCNA_01924 at 2070.603 kb on + strand, within CCNA_01924 at 2070.611 kb on - strand, within CCNA_01924 at 2070.624 kb on - strand, within CCNA_01924 at 2070.624 kb on - strand, within CCNA_01924 at 2070.634 kb on - strand, within CCNA_01924 at 2070.707 kb on - strand, within CCNA_01924 at 2070.707 kb on - strand, within CCNA_01924 at 2070.829 kb on + strand at 2070.837 kb on - strand at 2070.837 kb on - strand at 2070.839 kb on + strand at 2070.849 kb on + strand at 2070.880 kb on - strand at 2070.932 kb on + strand at 2070.932 kb on + strand at 2070.932 kb on + strand at 2070.932 kb on + strand at 2070.940 kb on - strand at 2070.940 kb on - strand at 2070.950 kb on - strand at 2070.981 kb on - strand at 2070.981 kb on - strand at 2071.015 kb on - strand at 2071.017 kb on + strand at 2071.050 kb on - strand at 2071.080 kb on - strand at 2071.080 kb on - strand at 2071.080 kb on - strand at 2071.080 kb on - strand at 2071.141 kb on - strand, within CCNA_01925 at 2071.141 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.252 kb on + strand, within CCNA_01925 at 2071.252 kb on + strand, within CCNA_01925 at 2071.254 kb on - strand, within CCNA_01925 at 2071.254 kb on - strand, within CCNA_01925 at 2071.254 kb on - strand, within CCNA_01925 at 2071.283 kb on - strand, within CCNA_01925 at 2071.305 kb on + strand, within CCNA_01925 at 2071.314 kb on + strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.321 kb on + strand, within CCNA_01925 at 2071.334 kb on + strand, within CCNA_01925 at 2071.334 kb on + strand, within CCNA_01925 at 2071.342 kb on - strand, within CCNA_01925 at 2071.350 kb on - strand at 2071.372 kb on - strand, within CCNA_01925 at 2071.388 kb on + strand, within CCNA_01925 at 2071.457 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.503 kb on - strand, within CCNA_01925 at 2071.503 kb on - strand, within CCNA_01925 at 2071.510 kb on + strand, within CCNA_01925 at 2071.539 kb on - strand, within CCNA_01925 at 2071.581 kb on + strand, within CCNA_01925 at 2071.589 kb on - strand, within CCNA_01925 at 2071.628 kb on + strand, within CCNA_01925 at 2071.631 kb on - strand, within CCNA_01925 at 2071.636 kb on - strand, within CCNA_01925 at 2071.636 kb on - strand, within CCNA_01925 at 2071.643 kb on - strand, within CCNA_01925 at 2071.645 kb on + strand, within CCNA_01925 at 2071.650 kb on + strand, within CCNA_01925 at 2071.650 kb on + strand, within CCNA_01925 at 2071.653 kb on - strand, within CCNA_01925 at 2071.662 kb on + strand, within CCNA_01925 at 2071.706 kb on + strand, within CCNA_01925 at 2071.732 kb on - strand, within CCNA_01925 at 2071.748 kb on + strand, within CCNA_01925 at 2071.756 kb on - strand, within CCNA_01925 at 2071.756 kb on - strand, within CCNA_01925 at 2071.763 kb on + strand, within CCNA_01925 at 2071.770 kb on + strand, within CCNA_01925 at 2071.824 kb on + strand, within CCNA_01925 at 2071.826 kb on - strand, within CCNA_01925 at 2071.849 kb on + strand, within CCNA_01925 at 2071.854 kb on + strand, within CCNA_01925 at 2071.910 kb on + strand, within CCNA_01925 at 2071.924 kb on + strand, within CCNA_01925
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 2,068,824 - CCNA_01923 0.43 -1.8 2,068,836 + CCNA_01923 0.44 +1.2 2,068,850 + CCNA_01923 0.45 +1.6 2,068,857 - CCNA_01923 0.45 -0.2 2,068,893 - CCNA_01923 0.47 +0.3 2,068,926 - CCNA_01923 0.49 +0.7 2,068,926 - CCNA_01923 0.49 +0.1 2,068,958 + CCNA_01923 0.52 +1.5 2,068,987 + CCNA_01923 0.53 +1.6 2,069,011 + CCNA_01923 0.55 +2.8 2,069,011 + CCNA_01923 0.55 +1.5 2,069,011 + CCNA_01923 0.55 +1.5 2,069,115 + CCNA_01923 0.62 +1.9 2,069,135 + CCNA_01923 0.63 +1.6 2,069,190 - CCNA_01923 0.66 +0.1 2,069,194 - CCNA_01923 0.67 +0.6 2,069,201 - CCNA_01923 0.67 +1.2 2,069,233 - CCNA_01923 0.69 +0.3 2,069,290 + CCNA_01923 0.73 +1.9 2,069,311 + CCNA_01923 0.74 +2.9 2,069,319 - CCNA_01923 0.75 +1.6 2,069,478 - CCNA_01923 0.85 -0.8 2,069,532 - CCNA_01923 0.88 +0.3 2,069,538 + CCNA_01923 0.89 +2.5 2,069,546 - CCNA_01923 0.89 -1.2 2,069,607 + +2.1 2,069,617 - +0.4 2,069,626 - +1.6 2,069,700 + +2.7 2,069,708 - +0.3 2,069,773 + -1.7 2,069,778 + +0.1 2,069,803 - +0.1 2,069,804 + -1.5 2,069,812 - +2.4 2,069,861 - +0.6 2,069,883 + +0.1 2,069,888 + -2.4 2,069,888 + -2.1 2,069,891 - +0.3 2,069,893 + +1.3 2,069,893 + -3.0 2,069,893 + -1.1 2,069,893 + +0.8 2,069,901 - CCNA_01924 0.10 -1.6 2,069,901 - CCNA_01924 0.10 -1.4 2,069,960 + CCNA_01924 0.15 -1.6 2,069,960 + CCNA_01924 0.15 +0.6 2,069,960 - CCNA_01924 0.15 +0.1 2,069,976 + CCNA_01924 0.17 -1.1 2,069,991 + CCNA_01924 0.18 -3.2 2,069,999 + CCNA_01924 0.19 -0.4 2,070,022 + CCNA_01924 0.21 -0.2 2,070,098 + CCNA_01924 0.27 +0.8 2,070,162 + CCNA_01924 0.33 +1.1 2,070,195 + CCNA_01924 0.36 +2.6 2,070,198 - CCNA_01924 0.36 -1.1 2,070,286 - CCNA_01924 0.43 -1.1 2,070,296 - CCNA_01924 0.44 -2.1 2,070,309 - CCNA_01924 0.45 -0.9 2,070,361 + CCNA_01924 0.50 -2.7 2,070,370 - CCNA_01924 0.51 -0.9 2,070,370 - CCNA_01924 0.51 -0.9 2,070,398 - CCNA_01924 0.53 +0.3 2,070,425 + CCNA_01924 0.56 -1.3 2,070,442 - CCNA_01924 0.57 +1.1 2,070,444 + CCNA_01924 0.57 +0.2 2,070,456 + CCNA_01924 0.58 -0.9 2,070,466 - CCNA_01924 0.59 +0.6 2,070,474 - CCNA_01924 0.60 -0.2 2,070,493 + CCNA_01924 0.61 -0.1 2,070,506 + CCNA_01924 0.63 +1.6 2,070,512 + CCNA_01924 0.63 -1.2 2,070,512 + CCNA_01924 0.63 +1.1 2,070,522 + CCNA_01924 0.64 -1.8 2,070,584 + CCNA_01924 0.69 -0.2 2,070,592 - CCNA_01924 0.70 +1.1 2,070,601 - CCNA_01924 0.71 +0.8 2,070,603 + CCNA_01924 0.71 -0.4 2,070,603 + CCNA_01924 0.71 -1.2 2,070,611 - CCNA_01924 0.72 +1.1 2,070,624 - CCNA_01924 0.73 +0.8 2,070,624 - CCNA_01924 0.73 -2.2 2,070,634 - CCNA_01924 0.74 +0.3 2,070,707 - CCNA_01924 0.80 +0.1 2,070,707 - CCNA_01924 0.80 -2.1 2,070,829 + -1.2 2,070,837 - -3.3 2,070,837 - +0.1 2,070,839 + -0.9 2,070,849 + +1.1 2,070,880 - +0.4 2,070,932 + +0.3 2,070,932 + -1.3 2,070,932 + -1.6 2,070,932 + -0.2 2,070,940 - +2.6 2,070,940 - -2.3 2,070,950 - -0.8 2,070,981 - +2.9 2,070,981 - -0.5 2,071,015 - -0.8 2,071,017 + +0.3 2,071,050 - -0.5 2,071,080 - -1.2 2,071,080 - -1.3 2,071,080 - -1.3 2,071,080 - -1.2 2,071,141 - CCNA_01925 0.12 +1.3 2,071,141 - CCNA_01925 0.12 +0.1 2,071,166 - CCNA_01925 0.14 +0.8 2,071,166 - CCNA_01925 0.14 -0.8 2,071,166 - CCNA_01925 0.14 -1.2 2,071,166 - CCNA_01925 0.14 +0.5 2,071,252 + CCNA_01925 0.19 -1.9 2,071,252 + CCNA_01925 0.19 +0.6 2,071,254 - CCNA_01925 0.20 -1.5 2,071,254 - CCNA_01925 0.20 -0.2 2,071,254 - CCNA_01925 0.20 -0.8 2,071,283 - CCNA_01925 0.22 -0.7 2,071,305 + CCNA_01925 0.23 +0.6 2,071,314 + CCNA_01925 0.24 -0.7 2,071,320 - CCNA_01925 0.24 +2.6 2,071,320 - CCNA_01925 0.24 +1.6 2,071,320 - CCNA_01925 0.24 +1.6 2,071,320 - CCNA_01925 0.24 -1.3 2,071,321 + CCNA_01925 0.24 +2.2 2,071,334 + CCNA_01925 0.25 +0.6 2,071,334 + CCNA_01925 0.25 +0.1 2,071,342 - CCNA_01925 0.26 +0.3 2,071,350 - +1.6 2,071,372 - CCNA_01925 0.28 +1.3 2,071,388 + CCNA_01925 0.29 -0.2 2,071,457 - CCNA_01925 0.33 -0.4 2,071,476 - CCNA_01925 0.35 +0.6 2,071,476 - CCNA_01925 0.35 +0.1 2,071,476 - CCNA_01925 0.35 -0.2 2,071,476 - CCNA_01925 0.35 -1.8 2,071,503 - CCNA_01925 0.37 +0.3 2,071,503 - CCNA_01925 0.37 +1.1 2,071,510 + CCNA_01925 0.37 -2.7 2,071,539 - CCNA_01925 0.39 -0.5 2,071,581 + CCNA_01925 0.42 -0.5 2,071,589 - CCNA_01925 0.43 +0.1 2,071,628 + CCNA_01925 0.45 -0.2 2,071,631 - CCNA_01925 0.45 +0.6 2,071,636 - CCNA_01925 0.46 -1.1 2,071,636 - CCNA_01925 0.46 +0.1 2,071,643 - CCNA_01925 0.46 -2.1 2,071,645 + CCNA_01925 0.46 -0.7 2,071,650 + CCNA_01925 0.47 -0.8 2,071,650 + CCNA_01925 0.47 +0.1 2,071,653 - CCNA_01925 0.47 +0.6 2,071,662 + CCNA_01925 0.48 +0.8 2,071,706 + CCNA_01925 0.51 +1.1 2,071,732 - CCNA_01925 0.52 +1.6 2,071,748 + CCNA_01925 0.53 +1.3 2,071,756 - CCNA_01925 0.54 -2.1 2,071,756 - CCNA_01925 0.54 -1.7 2,071,763 + CCNA_01925 0.54 +2.6 2,071,770 + CCNA_01925 0.55 -1.2 2,071,824 + CCNA_01925 0.59 +2.6 2,071,826 - CCNA_01925 0.59 +0.3 2,071,849 + CCNA_01925 0.60 -0.4 2,071,854 + CCNA_01925 0.61 -0.4 2,071,910 + CCNA_01925 0.65 -2.4 2,071,924 + CCNA_01925 0.66 -0.5
Or see this region's nucleotide sequence