Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01856

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,986,500	+		CCNA_01854	0.79	-0.8
1,986,518	-		CCNA_01854	0.82	+2.8
1,986,520	+		CCNA_01854	0.82	-1.8
1,986,542	+		CCNA_01854	0.85	+0.8
1,986,567	+		CCNA_01854	0.89	-1.0
1,986,646	+				-1.8
1,986,646	+				-0.8
1,986,646	+				+0.8
1,986,654	-				-0.3
1,986,654	-				+0.8
1,986,654	-				-0.7
1,986,656	+				+0.6
1,986,656	+				+0.4
1,986,656	+				+1.3
1,986,656	+				+0.8
1,986,656	+				+0.8
1,986,664	-				-0.2
1,986,664	-				+2.8
1,986,664	-				-0.1
1,986,717	+				+1.2
1,986,717	+				-1.0
1,986,751	+				+2.7
1,986,839	+				-1.3
1,986,857	+		CCNA_01855	0.12	+0.7
1,986,894	+		CCNA_01855	0.17	-1.9
1,986,897	-		CCNA_01855	0.18	+0.9
1,986,924	+		CCNA_01855	0.22	+0.4
1,986,964	+		CCNA_01855	0.27	-0.1
1,986,972	-		CCNA_01855	0.28	-0.0
1,986,972	-		CCNA_01855	0.28	+2.7
1,986,974	+		CCNA_01855	0.29	+0.2
1,986,982	+		CCNA_01855	0.30	-0.1
1,987,028	-		CCNA_01855	0.36	-2.4
1,987,107	-		CCNA_01855	0.47	-0.3
1,987,108	+		CCNA_01855	0.47	-1.7
1,987,108	+		CCNA_01855	0.47	-0.4
1,987,118	-		CCNA_01855	0.49	-0.3
1,987,130	+		CCNA_01855	0.50	+0.7
1,987,182	+		CCNA_01855	0.58	-0.8
1,987,201	-		CCNA_01855	0.60	-0.4
1,987,243	+		CCNA_01855	0.66	+0.2
1,987,243	+		CCNA_01855	0.66	-3.0
1,987,282	-		CCNA_01855	0.72	-1.1
1,987,335	+		CCNA_01855	0.79	-1.2
1,987,335	+		CCNA_01855	0.79	-0.6
1,987,335	+		CCNA_01855	0.79	-1.2
1,987,335	+		CCNA_01855	0.79	-0.6
1,987,343	-		CCNA_01855	0.80	+0.4
1,987,356	+		CCNA_01855	0.82	-2.1
1,987,393	+		CCNA_01855	0.87	+0.2
1,987,393	-		CCNA_01855	0.87	-1.9
1,987,396	-		CCNA_01855	0.87	-1.4
1,987,441	+				-2.8
1,987,452	+				+0.4
1,987,464	+				+0.4
1,987,472	-				+0.2
1,987,472	-				-0.4
1,987,533	+				+0.3
1,987,533	+				+2.3
1,987,605	-				+1.2
1,987,613	+				-0.1
1,987,656	+		CCNA_01856	0.10	+1.5
1,987,690	+		CCNA_01856	0.12	-1.9
1,987,773	+		CCNA_01856	0.16	-0.7
1,987,773	+		CCNA_01856	0.16	-0.1
1,987,775	+		CCNA_01856	0.16	+1.7
1,987,781	-		CCNA_01856	0.16	+1.7
1,987,796	+		CCNA_01856	0.17	+0.2
1,987,804	-		CCNA_01856	0.17	+1.7
1,987,810	+		CCNA_01856	0.17	-1.2
1,987,810	-		CCNA_01856	0.17	-0.6
1,987,815	+		CCNA_01856	0.18	+0.2
1,987,815	+		CCNA_01856	0.18	-1.4
1,987,820	+		CCNA_01856	0.18	-2.1
1,987,823	-		CCNA_01856	0.18	-0.8
1,987,825	+		CCNA_01856	0.18	+0.4
1,987,825	+		CCNA_01856	0.18	-0.1
1,987,833	-		CCNA_01856	0.18	-1.1
1,987,833	-		CCNA_01856	0.18	-0.3
1,987,833	-		CCNA_01856	0.18	+1.2
1,987,874	-		CCNA_01856	0.20	-0.6
1,987,882	+		CCNA_01856	0.21	-2.7
1,987,930	+		CCNA_01856	0.23	+1.7
1,987,930	+		CCNA_01856	0.23	+1.7
1,987,935	+		CCNA_01856	0.23	-0.4
1,987,940	+		CCNA_01856	0.23	+0.7
1,987,940	+		CCNA_01856	0.23	-0.8
1,987,948	-		CCNA_01856	0.24	+0.2
1,987,948	-		CCNA_01856	0.24	+1.7
1,988,032	-		CCNA_01856	0.27	+0.2
1,988,068	+		CCNA_01856	0.29	-1.0
1,988,068	+				+2.7
1,988,182	+		CCNA_01856	0.34	-0.3
1,988,255	-		CCNA_01856	0.38	+1.7
1,988,284	+		CCNA_01856	0.39	+1.7
1,988,284	+		CCNA_01856	0.39	-2.4
1,988,292	-		CCNA_01856	0.39	+1.2
1,988,292	-		CCNA_01856	0.39	-0.8
1,988,381	-		CCNA_01856	0.43	-1.4
1,988,390	-		CCNA_01856	0.44	-3.0
1,988,445	+		CCNA_01856	0.46	+1.2
1,988,453	-		CCNA_01856	0.47	+0.3
1,988,499	+		CCNA_01856	0.49	-0.8
1,988,511	+		CCNA_01856	0.49	-2.8
1,988,511	+		CCNA_01856	0.49	-3.3
1,988,519	-		CCNA_01856	0.50	-2.0
1,988,519	-		CCNA_01856	0.50	-1.8
1,988,529	+		CCNA_01856	0.50	-1.3
1,988,529	+		CCNA_01856	0.50	-1.4
1,988,529	+		CCNA_01856	0.50	-0.4
1,988,537	-		CCNA_01856	0.50	+0.7
1,988,537	-		CCNA_01856	0.50	-2.3
1,988,537	-		CCNA_01856	0.50	+0.7
1,988,537	-		CCNA_01856	0.50	-1.8
1,988,537	-		CCNA_01856	0.50	-1.4
1,988,549	+		CCNA_01856	0.51	-0.3
1,988,568	+		CCNA_01856	0.52	-0.0
1,988,576	-		CCNA_01856	0.52	+0.7
1,988,576	-		CCNA_01856	0.52	-1.6
1,988,581	-		CCNA_01856	0.52	-0.6
1,988,581	-		CCNA_01856	0.52	-1.0
1,988,622	-				+2.7
1,988,631	+		CCNA_01856	0.55	-1.3
1,988,636	+		CCNA_01856	0.55	-0.7
1,988,639	-		CCNA_01856	0.55	+1.7
1,988,639	-		CCNA_01856	0.55	+0.2
1,988,673	-		CCNA_01856	0.57	+0.2
1,988,681	+		CCNA_01856	0.57	-0.9
1,988,700	+		CCNA_01856	0.58	+1.3
1,988,700	+		CCNA_01856	0.58	+0.1
1,988,708	-		CCNA_01856	0.58	+0.2
1,988,708	-		CCNA_01856	0.58	-0.3
1,988,713	-		CCNA_01856	0.58	+1.2
1,988,849	+		CCNA_01856	0.65	-0.4
1,988,857	-		CCNA_01856	0.65	-0.3
1,988,859	+		CCNA_01856	0.65	-1.0
1,988,867	-		CCNA_01856	0.65	-1.1
1,988,868	+		CCNA_01856	0.65	-1.3
1,988,876	-		CCNA_01856	0.66	-1.8
1,988,955	+		CCNA_01856	0.69	-0.4
1,988,961	+		CCNA_01856	0.70	+0.3
1,988,982	+		CCNA_01856	0.71	-2.0
1,988,982	+		CCNA_01856	0.71	-2.1
1,988,990	-		CCNA_01856	0.71	-1.4
1,988,992	-		CCNA_01856	0.71	-0.1
1,989,022	+		CCNA_01856	0.72	+1.2
1,989,022	+		CCNA_01856	0.72	-1.5
1,989,052	-		CCNA_01856	0.74	+1.2
1,989,085	-		CCNA_01856	0.75	+0.3
1,989,173	-		CCNA_01856	0.79	-0.4
1,989,173	-		CCNA_01856	0.79	+1.2
1,989,174	+		CCNA_01856	0.79	-0.8
1,989,209	+		CCNA_01856	0.81	+0.7
1,989,232	+		CCNA_01856	0.82	+0.7
1,989,232	+		CCNA_01856	0.82	-0.3
1,989,242	+		CCNA_01856	0.82	+0.2
1,989,252	+				+1.2
1,989,278	+		CCNA_01856	0.84	-0.3
1,989,278	+		CCNA_01856	0.84	-0.1
1,989,279	+		CCNA_01856	0.84	+1.7
1,989,286	-		CCNA_01856	0.84	-0.8
1,989,287	-		CCNA_01856	0.85	+1.2
1,989,287	-		CCNA_01856	0.85	-0.4
1,989,324	+		CCNA_01856	0.86	+0.6
1,989,368	+		CCNA_01856	0.88	-0.8
1,989,368	+		CCNA_01856	0.88	-0.5
1,989,368	+		CCNA_01856	0.88	-1.4
1,989,418	+				-1.4
1,989,426	-				+0.4
1,989,428	+				-2.8
1,989,428	+				+0.4
1,989,428	+				-0.8
1,989,428	+				+0.5
1,989,436	-				-0.1
1,989,436	-				+1.8
1,989,449	+				+0.8
1,989,459	-				-0.4
1,989,459	-				+0.4
1,989,473	+				+0.4
1,989,473	+				-1.5
1,989,492	-				-0.2
1,989,494	+				-0.1
1,989,537	-				-0.6
1,989,571	+				-2.2
1,989,579	-				+0.8
1,989,582	+				+0.6
1,989,644	+				-0.6
1,989,671	+				+0.8
1,989,688	+				+1.8
1,989,696	-				-0.4
1,989,713	+				-0.5
1,989,718	+				-0.0
1,989,735	+				-1.7
1,989,779	+		CCNA_01857	0.10	-1.2
1,989,779	+		CCNA_01857	0.10	+0.2
1,989,835	+		CCNA_01857	0.14	-2.0
1,989,836	+		CCNA_01857	0.15	-2.0
1,989,841	+		CCNA_01857	0.15	+0.3
1,989,843	-		CCNA_01857	0.15	-0.2
1,989,843	-		CCNA_01857	0.15	+0.8
1,989,848	+		CCNA_01857	0.16	+0.8
1,989,849	-		CCNA_01857	0.16	-0.7
1,989,888	+		CCNA_01857	0.19	+0.2
1,989,916	+		CCNA_01857	0.21	-1.9
1,989,924	-		CCNA_01857	0.22	-1.5
1,989,924	-		CCNA_01857	0.22	-1.2
1,989,932	+		CCNA_01857	0.22	+0.5
1,989,942	+		CCNA_01857	0.23	+2.5
1,989,959	+		CCNA_01857	0.24	+2.0
1,989,965	+		CCNA_01857	0.25	-1.0
1,989,965	+		CCNA_01857	0.25	-0.4
1,989,973	-		CCNA_01857	0.25	+0.8
1,989,973	-		CCNA_01857	0.25	-1.1
1,989,986	+		CCNA_01857	0.26	+0.5
1,989,995	+		CCNA_01857	0.27	-1.6
1,990,000	+		CCNA_01857	0.28	-1.6
1,990,001	+		CCNA_01857	0.28	-0.5
1,990,310	+		CCNA_01857	0.52	+0.8
1,990,310	+		CCNA_01857	0.52	-0.6
1,990,318	-		CCNA_01857	0.53	-0.7
1,990,325	+		CCNA_01857	0.53	+0.5
1,990,363	-		CCNA_01857	0.56	+2.0
1,990,376	+		CCNA_01857	0.58	-1.2
1,990,376	+		CCNA_01857	0.58	-2.4
1,990,376	+		CCNA_01857	0.58	-2.2
1,990,376	+		CCNA_01857	0.58	-0.4
1,990,384	-		CCNA_01857	0.58	-0.1
1,990,384	-		CCNA_01857	0.58	+1.8
1,990,384	-		CCNA_01857	0.58	+0.8
1,990,448	+		CCNA_01857	0.63	-1.3
1,990,456	-		CCNA_01857	0.64	+0.8
1,990,456	-		CCNA_01857	0.64	+0.8
1,990,456	-		CCNA_01857	0.64	+1.8
1,990,477	-		CCNA_01857	0.66	-0.4
1,990,478	+		CCNA_01857	0.66	-2.2
1,990,498	-		CCNA_01857	0.67	+0.8
1,990,500	-		CCNA_01857	0.67	+0.4
1,990,533	+		CCNA_01857	0.70	-1.4
1,990,551	+		CCNA_01857	0.71	+1.6
1,990,605	-		CCNA_01857	0.76	+0.8
1,990,612	-		CCNA_01857	0.76	-0.1