Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01855

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,985,870	+				-0.1
1,985,870	+				-0.1
1,985,884	+				+2.3
1,985,897	-				+0.4
1,985,922	-				+1.8
1,985,922	-				-0.3
1,985,922	-				+1.2
1,985,938	+				-0.1
1,985,946	-				+0.8
1,985,946	-				+0.8
1,985,976	+				+0.8
1,985,986	+				+0.8
1,985,994	-				-0.8
1,986,061	+				+1.8
1,986,061	+		CCNA_01854	0.13	+0.8
1,986,083	+		CCNA_01854	0.16	+0.8
1,986,146	-		CCNA_01854	0.26	-1.0
1,986,206	+		CCNA_01854	0.35	+0.4
1,986,223	-		CCNA_01854	0.37	-1.5
1,986,265	+		CCNA_01854	0.44	-1.6
1,986,273	-		CCNA_01854	0.45	-0.1
1,986,277	+		CCNA_01854	0.45	-0.2
1,986,284	-		CCNA_01854	0.47	+0.8
1,986,285	-		CCNA_01854	0.47	+2.8
1,986,363	+		CCNA_01854	0.58	-0.8
1,986,391	+		CCNA_01854	0.63	-0.1
1,986,392	+		CCNA_01854	0.63	-0.4
1,986,415	+		CCNA_01854	0.66	+0.0
1,986,415	+		CCNA_01854	0.66	-0.0
1,986,500	+		CCNA_01854	0.79	-0.8
1,986,518	-		CCNA_01854	0.82	+2.8
1,986,520	+		CCNA_01854	0.82	-1.8
1,986,542	+		CCNA_01854	0.85	+0.8
1,986,567	+		CCNA_01854	0.89	-1.0
1,986,646	+				-1.8
1,986,646	+				-0.8
1,986,646	+				+0.8
1,986,654	-				-0.3
1,986,654	-				+0.8
1,986,654	-				-0.7
1,986,656	+				+0.6
1,986,656	+				+0.4
1,986,656	+				+1.3
1,986,656	+				+0.8
1,986,656	+				+0.8
1,986,664	-				-0.2
1,986,664	-				+2.8
1,986,664	-				-0.1
1,986,717	+				+1.2
1,986,717	+				-1.0
1,986,751	+				+2.7
1,986,839	+				-1.3
1,986,857	+		CCNA_01855	0.12	+0.7
1,986,894	+		CCNA_01855	0.17	-1.9
1,986,897	-		CCNA_01855	0.18	+0.9
1,986,924	+		CCNA_01855	0.22	+0.4
1,986,964	+		CCNA_01855	0.27	-0.1
1,986,972	-		CCNA_01855	0.28	-0.0
1,986,972	-		CCNA_01855	0.28	+2.7
1,986,974	+		CCNA_01855	0.29	+0.2
1,986,982	+		CCNA_01855	0.30	-0.1
1,987,028	-		CCNA_01855	0.36	-2.4
1,987,107	-		CCNA_01855	0.47	-0.3
1,987,108	+		CCNA_01855	0.47	-1.7
1,987,108	+		CCNA_01855	0.47	-0.4
1,987,118	-		CCNA_01855	0.49	-0.3
1,987,130	+		CCNA_01855	0.50	+0.7
1,987,182	+		CCNA_01855	0.58	-0.8
1,987,201	-		CCNA_01855	0.60	-0.4
1,987,243	+		CCNA_01855	0.66	+0.2
1,987,243	+		CCNA_01855	0.66	-3.0
1,987,282	-		CCNA_01855	0.72	-1.1
1,987,335	+		CCNA_01855	0.79	-1.2
1,987,335	+		CCNA_01855	0.79	-0.6
1,987,335	+		CCNA_01855	0.79	-1.2
1,987,335	+		CCNA_01855	0.79	-0.6
1,987,343	-		CCNA_01855	0.80	+0.4
1,987,356	+		CCNA_01855	0.82	-2.1
1,987,393	+		CCNA_01855	0.87	+0.2
1,987,393	-		CCNA_01855	0.87	-1.9
1,987,396	-		CCNA_01855	0.87	-1.4
1,987,441	+				-2.8
1,987,452	+				+0.4
1,987,464	+				+0.4
1,987,472	-				+0.2
1,987,472	-				-0.4
1,987,533	+				+0.3
1,987,533	+				+2.3
1,987,605	-				+1.2
1,987,613	+				-0.1
1,987,656	+		CCNA_01856	0.10	+1.5
1,987,690	+		CCNA_01856	0.12	-1.9
1,987,773	+		CCNA_01856	0.16	-0.7
1,987,773	+		CCNA_01856	0.16	-0.1
1,987,775	+		CCNA_01856	0.16	+1.7
1,987,781	-		CCNA_01856	0.16	+1.7
1,987,796	+		CCNA_01856	0.17	+0.2
1,987,804	-		CCNA_01856	0.17	+1.7
1,987,810	+		CCNA_01856	0.17	-1.2
1,987,810	-		CCNA_01856	0.17	-0.6
1,987,815	+		CCNA_01856	0.18	+0.2
1,987,815	+		CCNA_01856	0.18	-1.4
1,987,820	+		CCNA_01856	0.18	-2.1
1,987,823	-		CCNA_01856	0.18	-0.8
1,987,825	+		CCNA_01856	0.18	+0.4
1,987,825	+		CCNA_01856	0.18	-0.1
1,987,833	-		CCNA_01856	0.18	-1.1
1,987,833	-		CCNA_01856	0.18	-0.3
1,987,833	-		CCNA_01856	0.18	+1.2
1,987,874	-		CCNA_01856	0.20	-0.6
1,987,882	+		CCNA_01856	0.21	-2.7
1,987,930	+		CCNA_01856	0.23	+1.7
1,987,930	+		CCNA_01856	0.23	+1.7
1,987,935	+		CCNA_01856	0.23	-0.4
1,987,940	+		CCNA_01856	0.23	+0.7
1,987,940	+		CCNA_01856	0.23	-0.8
1,987,948	-		CCNA_01856	0.24	+0.2
1,987,948	-		CCNA_01856	0.24	+1.7
1,988,032	-		CCNA_01856	0.27	+0.2
1,988,068	+		CCNA_01856	0.29	-1.0
1,988,068	+				+2.7
1,988,182	+		CCNA_01856	0.34	-0.3
1,988,255	-		CCNA_01856	0.38	+1.7
1,988,284	+		CCNA_01856	0.39	+1.7
1,988,284	+		CCNA_01856	0.39	-2.4
1,988,292	-		CCNA_01856	0.39	+1.2
1,988,292	-		CCNA_01856	0.39	-0.8
1,988,381	-		CCNA_01856	0.43	-1.4
1,988,390	-		CCNA_01856	0.44	-3.0
1,988,445	+		CCNA_01856	0.46	+1.2
1,988,453	-		CCNA_01856	0.47	+0.3