Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01522

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,629,582	+				+0.7
1,629,582	+				-1.4
1,629,583	+				-1.2
1,629,583	+				+0.0
1,629,585	-				+0.8
1,629,590	-				-0.7
1,629,590	-				+0.3
1,629,590	-				+1.5
1,629,590	-				+1.4
1,629,591	-				+1.1
1,629,593	+				+0.7
1,629,613	-				-0.0
1,629,690	+				-1.2
1,629,690	+				-0.7
1,629,690	+				-0.9
1,629,698	-				+0.7
1,629,698	-				-0.6
1,629,712	+				-1.4
1,629,712	-				+0.6
1,629,719	+				-0.1
1,629,719	+				+0.8
1,629,719	+				-0.3
1,629,719	+				+0.0
1,629,727	-		CCNA_01521	0.10	+1.4
1,629,744	-		CCNA_01521	0.12	+2.8
1,629,744	-		CCNA_01521	0.12	+0.9
1,629,744	-		CCNA_01521	0.12	+0.9
1,629,788	-		CCNA_01521	0.18	+0.0
1,629,839	-		CCNA_01521	0.24	-0.0
1,629,866	+		CCNA_01521	0.27	+1.3
1,629,878	+		CCNA_01521	0.29	+0.9
1,629,898	+		CCNA_01521	0.31	+0.5
1,629,906	-		CCNA_01521	0.32	-0.7
1,629,906	-		CCNA_01521	0.32	+1.7
1,629,908	+		CCNA_01521	0.32	+0.9
1,629,908	+		CCNA_01521	0.32	+0.8
1,629,925	+		CCNA_01521	0.35	+4.2
1,629,955	-		CCNA_01521	0.38	-0.3
1,629,955	-		CCNA_01521	0.38	+1.7
1,629,978	+		CCNA_01521	0.41	+2.7
1,629,985	+		CCNA_01521	0.42	-1.0
1,630,034	-		CCNA_01521	0.48	+0.4
1,630,054	+		CCNA_01521	0.50	+0.7
1,630,102	+		CCNA_01521	0.56	+0.6
1,630,116	-		CCNA_01521	0.58	+1.7
1,630,126	-		CCNA_01521	0.59	+0.6
1,630,153	+		CCNA_01521	0.62	-0.2
1,630,153	+		CCNA_01521	0.62	+1.8
1,630,161	-		CCNA_01521	0.63	+0.3
1,630,182	-		CCNA_01521	0.66	+1.8
1,630,236	+		CCNA_01521	0.73	+1.1
1,630,258	-		CCNA_01521	0.75	+0.9
1,630,263	-		CCNA_01521	0.76	+1.8
1,630,284	+		CCNA_01521	0.79	-0.2
1,630,297	-		CCNA_01521	0.80	+0.7
1,630,297	-		CCNA_01521	0.80	+2.6
1,630,353	-		CCNA_01521	0.87	+1.4
1,630,357	-		CCNA_01521	0.88	-0.2
1,630,359	-		CCNA_01521	0.88	+1.4
1,630,395	-				+0.2
1,630,397	+				-0.9
1,630,399	+				+0.6
1,630,399	+				+1.2
1,630,399	+				+1.1
1,630,407	-				+2.7
1,630,407	-				+2.0
1,630,407	-				+2.0
1,630,476	+				-0.0
1,630,479	-				+0.9
1,630,484	-				+0.8
1,630,486	+				-0.1
1,630,494	-				-1.4
1,630,494	-				+3.8
1,630,519	+				-0.7
1,630,563	+				-0.2
1,630,570	-				+2.6
1,630,610	-				+0.4
1,630,617	-				-1.4
1,630,636	+				+2.8
1,630,694	+		CCNA_01522	0.16	+0.8
1,630,698	-		CCNA_01522	0.16	-1.5
1,630,702	-		CCNA_01522	0.17	+0.1
1,630,702	-		CCNA_01522	0.17	+1.1
1,630,702	-		CCNA_01522	0.17	+1.0
1,630,727	+		CCNA_01522	0.20	-0.5
1,630,727	+		CCNA_01522	0.20	-0.5
1,630,727	+		CCNA_01522	0.20	+0.5
1,630,735	-		CCNA_01522	0.20	+1.5
1,630,735	-		CCNA_01522	0.20	+1.9
1,630,745	+		CCNA_01522	0.22	-0.2
1,630,745	+		CCNA_01522	0.22	-1.7
1,630,745	-		CCNA_01522	0.22	-0.1
1,630,745	-		CCNA_01522	0.22	+1.1
1,630,745	-		CCNA_01522	0.22	+0.9
1,630,761	-		CCNA_01522	0.23	-0.0
1,630,761	-		CCNA_01522	0.23	-1.1
1,630,823	+		CCNA_01522	0.31	+3.7
1,630,964	-		CCNA_01522	0.47	+0.7
1,630,980	-		CCNA_01522	0.49	+0.7
1,631,012	+		CCNA_01522	0.52	+0.9
1,631,020	-		CCNA_01522	0.53	+1.9
1,631,041	-		CCNA_01522	0.56	+0.5
1,631,114	-		CCNA_01522	0.64	-0.9
1,631,116	+		CCNA_01522	0.64	+1.2
1,631,124	-		CCNA_01522	0.65	-1.6
1,631,129	-		CCNA_01522	0.66	+0.0
1,631,130	-		CCNA_01522	0.66	+0.8
1,631,143	+		CCNA_01522	0.67	-1.2
1,631,151	-		CCNA_01522	0.68	-1.2
1,631,152	+		CCNA_01522	0.68	+3.3
1,631,160	-		CCNA_01522	0.69	+0.8
1,631,201	-		CCNA_01522	0.74	-1.4
1,631,247	+		CCNA_01522	0.79	-2.0
1,631,300	-		CCNA_01522	0.85	-0.3
1,631,328	+		CCNA_01522	0.89	+1.8
1,631,331	-		CCNA_01522	0.89	-2.3
1,631,331	-		CCNA_01522	0.89	-0.7
1,631,331	-		CCNA_01522	0.89	-1.1
1,631,336	-		CCNA_01522	0.90	+0.9
1,631,380	-				+0.0
1,631,407	+				+2.8
1,631,428	-				+1.6
1,631,428	-				-0.2
1,631,505	+				-0.2
1,631,511	+				+0.6
1,631,566	+				+1.2
1,631,566	+				+0.5
1,631,566	+				-0.7
1,631,573	-				+0.5
1,631,573	-				+2.8
1,631,574	-				+1.0
1,631,574	-				+0.8
1,631,574	-				-1.4
1,631,574	-				+0.5
1,631,574	-				-0.2
1,631,609	+		CCNA_01523	0.13	+2.2
1,631,633	+		CCNA_01523	0.17	-0.5
1,631,633	+		CCNA_01523	0.17	+0.8
1,631,633	+		CCNA_01523	0.17	-1.7
1,631,641	-		CCNA_01523	0.18	+1.0
1,631,641	-				+2.8
1,631,641	-		CCNA_01523	0.18	+1.0
1,631,641	-		CCNA_01523	0.18	-0.9
1,631,656	+		CCNA_01523	0.21	-1.4
1,631,664	-		CCNA_01523	0.22	-0.2
1,631,669	-		CCNA_01523	0.23	-0.2
1,631,693	-		CCNA_01523	0.27	+2.8
1,631,704	+		CCNA_01523	0.29	+1.8
1,631,706	+		CCNA_01523	0.29	+0.8
1,631,740	+		CCNA_01523	0.35	-1.0
1,631,843	+		CCNA_01523	0.53	+1.2
1,631,843	+		CCNA_01523	0.53	+1.8
1,631,843	+		CCNA_01523	0.53	+0.2
1,631,851	-		CCNA_01523	0.54	-2.7
1,631,851	-		CCNA_01523	0.54	-1.6
1,631,851	-		CCNA_01523	0.54	+0.8
1,631,851	-		CCNA_01523	0.54	-0.4
1,631,851	-		CCNA_01523	0.54	+0.2
1,631,851	-		CCNA_01523	0.54	-0.4
1,631,851	-		CCNA_01523	0.54	+1.3
1,631,851	-		CCNA_01523	0.54	+3.4
1,631,853	+		CCNA_01523	0.55	+1.2
1,631,860	-		CCNA_01523	0.56	-1.4
1,631,883	-		CCNA_01523	0.60	+0.8
1,631,910	+		CCNA_01523	0.64	-0.2
1,631,917	+		CCNA_01523	0.66	-1.2
1,631,929	+		CCNA_01523	0.68	+0.2
1,631,931	-		CCNA_01523	0.68	+0.8
1,631,985	-				+1.2
1,632,027	+		CCNA_01523	0.85	+1.8
1,632,027	+		CCNA_01523	0.85	-0.4
1,632,027	+		CCNA_01523	0.85	+0.8
1,632,031	-				+3.5
1,632,035	-		CCNA_01523	0.86	-0.0
1,632,041	+		CCNA_01523	0.87	-0.0
1,632,094	-				+0.2
1,632,176	+				+0.5
1,632,184	+				+1.2
1,632,186	+				-1.7
1,632,200	+				-1.9
1,632,204	-				+0.6
1,632,206	+				+0.5
1,632,214	-				-0.3
1,632,223	+				-0.7
1,632,223	+				+1.8
1,632,223	+				+0.8
1,632,223	+				+1.8
1,632,231	-				-0.8
1,632,246	+				-0.9
1,632,247	+				-1.1
1,632,247	+				-0.0
1,632,247	+				-0.0
1,632,256	+				+1.2
1,632,257	+				+1.2
1,632,260	-				-1.3
1,632,261	+				-1.0
1,632,261	+				-1.2
1,632,269	-				-0.1
1,632,295	+				-1.2
1,632,322	+				-0.2
1,632,340	+				+2.2
1,632,343	-				+0.9
1,632,348	-				+1.2
1,632,411	-				-2.0