Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01492

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,600,187	-		CCNA_01491	0.16	+0.3
1,600,187	-		CCNA_01491	0.16	+0.8
1,600,237	+		CCNA_01491	0.20	-0.2
1,600,257	-		CCNA_01491	0.22	+0.2
1,600,257	-		CCNA_01491	0.22	+2.3
1,600,331	-		CCNA_01491	0.29	+1.2
1,600,360	-		CCNA_01491	0.31	-0.7
1,600,360	-		CCNA_01491	0.31	+0.1
1,600,360	-		CCNA_01491	0.31	-0.3
1,600,385	-		CCNA_01491	0.33	+1.1
1,600,395	+		CCNA_01491	0.34	-0.0
1,600,423	-		CCNA_01491	0.37	-0.2
1,600,434	+		CCNA_01491	0.37	+0.2
1,600,435	+		CCNA_01491	0.38	+0.2
1,600,435	+		CCNA_01491	0.38	+0.8
1,600,438	-		CCNA_01491	0.38	+0.4
1,600,443	-		CCNA_01491	0.38	+0.1
1,600,443	-		CCNA_01491	0.38	+0.2
1,600,443	-		CCNA_01491	0.38	+2.3
1,600,486	+		CCNA_01491	0.42	+1.8
1,600,494	-		CCNA_01491	0.43	+0.3
1,600,500	-		CCNA_01491	0.43	+0.5
1,600,515	+		CCNA_01491	0.44	-0.0
1,600,523	-		CCNA_01491	0.45	+0.2
1,600,576	-		CCNA_01491	0.50	+0.3
1,600,603	+		CCNA_01491	0.52	-1.0
1,600,742	+		CCNA_01491	0.64	+1.8
1,600,764	-		CCNA_01491	0.66	+0.4
1,600,782	-		CCNA_01491	0.67	-1.2
1,600,787	+		CCNA_01491	0.68	+1.8
1,600,787	+		CCNA_01491	0.68	+0.2
1,600,787	+		CCNA_01491	0.68	+1.2
1,600,795	-		CCNA_01491	0.69	-1.0
1,600,795	-		CCNA_01491	0.69	+0.2
1,600,815	-		CCNA_01491	0.70	+2.6
1,600,863	+		CCNA_01491	0.74	-0.4
1,600,877	-		CCNA_01491	0.76	-2.3
1,600,932	-		CCNA_01491	0.80	+0.0
1,600,944	-		CCNA_01491	0.81	-0.7
1,600,951	-		CCNA_01491	0.82	+0.6
1,600,966	+		CCNA_01491	0.83	+2.8
1,600,970	-		CCNA_01491	0.84	+0.9
1,601,004	-		CCNA_01491	0.87	-1.1
1,601,027	+		CCNA_01491	0.89	-0.2
1,601,043	-		CCNA_01491	0.90	-0.1
1,601,045	-				+0.3
1,601,068	-				+0.1
1,601,079	-				-2.1
1,601,114	-				+0.7
1,601,121	+				+1.8
1,601,164	+				-0.0
1,601,253	-				+1.3
1,601,255	+				+2.8
1,601,263	-				-0.1
1,601,265	+				+0.2
1,601,325	+		CCNA_01492	0.16	-0.9
1,601,325	+		CCNA_01492	0.16	+0.2
1,601,333	+		CCNA_01492	0.17	-2.3
1,601,333	-		CCNA_01492	0.17	-1.2
1,601,396	+		CCNA_01492	0.25	-0.4
1,601,404	-		CCNA_01492	0.26	+1.3
1,601,409	-		CCNA_01492	0.26	+0.2
1,601,480	+		CCNA_01492	0.34	+0.5
1,601,480	+		CCNA_01492	0.34	+1.8
1,601,480	+		CCNA_01492	0.34	+2.4
1,601,480	+		CCNA_01492	0.34	+0.2
1,601,488	-		CCNA_01492	0.35	-1.7
1,601,488	-		CCNA_01492	0.35	+1.8
1,601,488	-		CCNA_01492	0.35	+1.2
1,601,488	-		CCNA_01492	0.35	+1.2
1,601,488	-		CCNA_01492	0.35	+1.0
1,601,493	-		CCNA_01492	0.36	+0.9
1,601,625	+		CCNA_01492	0.51	-0.4
1,601,687	-		CCNA_01492	0.59	+3.0
1,601,757	+		CCNA_01492	0.67	+0.2
1,601,763	-		CCNA_01492	0.67	+1.6
1,601,765	-		CCNA_01492	0.68	-1.9
1,601,765	-		CCNA_01492	0.68	+2.1
1,601,765	-		CCNA_01492	0.68	+1.5
1,601,765	-		CCNA_01492	0.68	+2.2
1,601,789	+		CCNA_01492	0.71	-1.8
1,601,797	-		CCNA_01492	0.71	+1.7
1,601,797	-		CCNA_01492	0.71	+1.1
1,601,832	+		CCNA_01492	0.76	-0.4
1,601,847	+		CCNA_01492	0.77	+0.5
1,601,901	-		CCNA_01492	0.84	+1.8
1,601,958	+				+1.2
1,601,992	-				+1.5
1,602,004	-				+0.4
1,602,005	+				+2.8
1,602,071	+				-2.2
1,602,071	+				+1.2
1,602,079	-				+2.8
1,602,079	-				+0.4
1,602,079	-				+0.3
1,602,079	-				-2.2
1,602,079	-				+1.5
1,602,127	-				-1.7
1,602,127	-				-1.9
1,602,161	+				-0.0
1,602,161	+				-0.2
1,602,171	+				+1.2
1,602,178	+				+1.8
1,602,179	-				-1.0
1,602,197	+				+0.5
1,602,207	-				-0.0
1,602,222	+		CCNA_01493	0.11	+0.2
1,602,222	+		CCNA_01493	0.11	+1.6
1,602,222	+		CCNA_01493	0.11	-0.7
1,602,222	+		CCNA_01493	0.11	+0.5
1,602,230	-		CCNA_01493	0.12	-2.1
1,602,268	+		CCNA_01493	0.15	+1.2
1,602,271	-		CCNA_01493	0.16	+0.2
1,602,272	-		CCNA_01493	0.16	+2.8
1,602,288	+		CCNA_01493	0.17	-0.9
1,602,296	-		CCNA_01493	0.18	-2.6
1,602,296	-		CCNA_01493	0.18	-0.8
1,602,297	-		CCNA_01493	0.18	+1.5
1,602,322	-		CCNA_01493	0.21	+1.6
1,602,334	+				+2.8
1,602,382	-		CCNA_01493	0.27	+0.5
1,602,386	+		CCNA_01493	0.27	-0.0
1,602,391	+		CCNA_01493	0.28	-1.0
1,602,404	+		CCNA_01493	0.29	+0.5
1,602,457	-		CCNA_01493	0.34	-1.2
1,602,457	-		CCNA_01493	0.34	-0.2
1,602,525	+		CCNA_01493	0.41	-1.0
1,602,533	-		CCNA_01493	0.42	+0.8
1,602,533	-		CCNA_01493	0.42	-1.3
1,602,541	+		CCNA_01493	0.43	-0.7
1,602,579	-		CCNA_01493	0.46	-1.9
1,602,593	-		CCNA_01493	0.48	-0.4
1,602,676	-		CCNA_01493	0.56	-1.0
1,602,686	+		CCNA_01493	0.57	+0.5
1,602,695	-		CCNA_01493	0.58	+2.5
1,602,743	+		CCNA_01493	0.63	+0.5
1,602,797	-		CCNA_01493	0.68	-0.0
1,602,824	-		CCNA_01493	0.71	-1.4
1,602,839	-		CCNA_01493	0.72	+2.8
1,602,848	+		CCNA_01493	0.73	-0.2
1,602,853	+		CCNA_01493	0.74	-1.2
1,602,869	+		CCNA_01493	0.75	+1.2
1,602,869	+		CCNA_01493	0.75	-0.2
1,602,877	-		CCNA_01493	0.76	-1.3
1,602,882	-		CCNA_01493	0.77	+0.2
1,602,898	-		CCNA_01493	0.78	+0.3
1,602,912	-		CCNA_01493	0.80	-0.2
1,602,938	+		CCNA_01493	0.82	+2.8
1,602,938	+		CCNA_01493	0.82	+1.2
1,602,946	-		CCNA_01493	0.83	-0.4
1,602,946	-		CCNA_01493	0.83	-0.9
1,602,951	-		CCNA_01493	0.84	-0.4
1,602,979	+		CCNA_01493	0.86	+1.2
1,602,979	+		CCNA_01493	0.86	+0.2
1,602,979	+		CCNA_01493	0.86	+0.5
1,602,987	-		CCNA_01493	0.87	+1.8
1,602,987	-		CCNA_01493	0.87	+0.2
1,603,015	-				+2.4
1,603,031	-				-1.8