Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01303 and CCNA_01304 are separated by 228 nucleotides CCNA_01304 and CCNA_01305 are separated by 13 nucleotides CCNA_01305 and CCNA_01306 overlap by 23 nucleotides
CCNA_01303: CCNA_01303 - hypothetical protein, at 1,430,061 to 1,430,900
_01303
CCNA_01304: CCNA_01304 - hypothetical protein, at 1,431,129 to 1,431,329
_01304
CCNA_01305: CCNA_01305 - SSU ribosomal protein S10P, at 1,431,343 to 1,431,651
_01305
CCNA_01306: CCNA_01306 - LSU ribosomal protein L3P, at 1,431,629 to 1,432,432
_01306
Position (kb)
1431
1432 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1430.183 kb on + strand, within CCNA_01303 at 1430.183 kb on + strand, within CCNA_01303 at 1430.192 kb on + strand, within CCNA_01303 at 1430.193 kb on - strand, within CCNA_01303 at 1430.223 kb on + strand, within CCNA_01303 at 1430.276 kb on + strand, within CCNA_01303 at 1430.283 kb on - strand, within CCNA_01303 at 1430.316 kb on + strand, within CCNA_01303 at 1430.324 kb on - strand, within CCNA_01303 at 1430.329 kb on - strand, within CCNA_01303 at 1430.344 kb on - strand, within CCNA_01303 at 1430.349 kb on - strand, within CCNA_01303 at 1430.452 kb on + strand, within CCNA_01303 at 1430.457 kb on + strand, within CCNA_01303 at 1430.500 kb on - strand, within CCNA_01303 at 1430.506 kb on - strand, within CCNA_01303 at 1430.506 kb on - strand, within CCNA_01303 at 1430.529 kb on + strand, within CCNA_01303 at 1430.595 kb on + strand, within CCNA_01303 at 1430.635 kb on - strand, within CCNA_01303 at 1430.654 kb on - strand, within CCNA_01303 at 1430.708 kb on + strand, within CCNA_01303 at 1430.716 kb on - strand, within CCNA_01303 at 1430.716 kb on - strand, within CCNA_01303 at 1430.716 kb on - strand, within CCNA_01303 at 1430.747 kb on - strand, within CCNA_01303 at 1430.789 kb on - strand, within CCNA_01303 at 1430.825 kb on + strand at 1430.864 kb on + strand at 1430.885 kb on - strand at 1430.890 kb on + strand at 1430.900 kb on + strand at 1430.931 kb on + strand at 1430.939 kb on - strand at 1430.953 kb on + strand at 1430.983 kb on - strand at 1431.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 1,430,183 + CCNA_01303 0.15 +1.0 1,430,183 + CCNA_01303 0.15 -0.8 1,430,192 + CCNA_01303 0.16 +1.3 1,430,193 - CCNA_01303 0.16 -1.4 1,430,223 + CCNA_01303 0.19 -1.2 1,430,276 + CCNA_01303 0.26 +3.8 1,430,283 - CCNA_01303 0.26 -1.2 1,430,316 + CCNA_01303 0.30 +0.7 1,430,324 - CCNA_01303 0.31 +1.0 1,430,329 - CCNA_01303 0.32 +1.5 1,430,344 - CCNA_01303 0.34 -0.8 1,430,349 - CCNA_01303 0.34 -2.8 1,430,452 + CCNA_01303 0.47 +1.8 1,430,457 + CCNA_01303 0.47 +0.6 1,430,500 - CCNA_01303 0.52 -1.1 1,430,506 - CCNA_01303 0.53 +1.6 1,430,506 - CCNA_01303 0.53 +2.2 1,430,529 + CCNA_01303 0.56 +0.2 1,430,595 + CCNA_01303 0.64 -1.4 1,430,635 - CCNA_01303 0.68 -0.9 1,430,654 - CCNA_01303 0.71 +1.4 1,430,708 + CCNA_01303 0.77 +1.8 1,430,716 - CCNA_01303 0.78 +0.3 1,430,716 - CCNA_01303 0.78 -2.5 1,430,716 - CCNA_01303 0.78 +0.0 1,430,747 - CCNA_01303 0.82 +0.8 1,430,789 - CCNA_01303 0.87 +0.3 1,430,825 + +2.7 1,430,864 + +2.7 1,430,885 - -1.3 1,430,890 + -0.2 1,430,900 + +0.7 1,430,931 + +1.9 1,430,939 - +0.6 1,430,953 + +1.9 1,430,983 - -1.0 1,431,021 + -2.0
Or see this region's nucleotide sequence