Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01248

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,374,998	+		CCNA_01247	0.45	+0.3
1,375,006	-		CCNA_01247	0.45	-1.0
1,375,040	-		CCNA_01247	0.48	-1.1
1,375,081	+		CCNA_01247	0.50	+0.8
1,375,109	+		CCNA_01247	0.52	-0.3
1,375,133	+		CCNA_01247	0.54	-1.4
1,375,159	+		CCNA_01247	0.56	-2.4
1,375,159	+		CCNA_01247	0.56	-0.4
1,375,175	+		CCNA_01247	0.57	-0.8
1,375,193	-		CCNA_01247	0.58	+1.6
1,375,215	+		CCNA_01247	0.60	+2.6
1,375,222	+		CCNA_01247	0.60	-0.7
1,375,242	+		CCNA_01247	0.62	-0.2
1,375,262	+		CCNA_01247	0.63	+1.6
1,375,290	-		CCNA_01247	0.65	+0.3
1,375,405	+		CCNA_01247	0.73	+1.0
1,375,424	-		CCNA_01247	0.74	+0.4
1,375,428	+		CCNA_01247	0.75	+0.6
1,375,428	+		CCNA_01247	0.75	-0.4
1,375,436	-		CCNA_01247	0.75	-1.7
1,375,438	-		CCNA_01247	0.75	+1.0
1,375,438	-		CCNA_01247	0.75	+0.2
1,375,438	-		CCNA_01247	0.75	+1.0
1,375,455	-		CCNA_01247	0.76	-1.1
1,375,457	-		CCNA_01247	0.77	+1.3
1,375,472	+		CCNA_01247	0.78	+1.6
1,375,511	-		CCNA_01247	0.80	-1.2
1,375,529	-		CCNA_01247	0.82	-0.4
1,375,551	+		CCNA_01247	0.83	+0.3
1,375,564	-		CCNA_01247	0.84	-0.4
1,375,569	-		CCNA_01247	0.84	-0.9
1,375,581	-		CCNA_01247	0.85	-2.3
1,375,597	+		CCNA_01247	0.86	-0.1
1,375,605	-		CCNA_01247	0.87	-1.6
1,375,644	+		CCNA_01247	0.90	-1.1
1,375,644	+		CCNA_01247	0.90	+0.3
1,375,644	+		CCNA_01247	0.90	+0.6
1,375,644	+		CCNA_01247	0.90	-2.0
1,375,652	-				-1.2
1,375,652	-				-1.9
1,375,652	-				-0.3
1,375,652	-				+0.0
1,375,734	-				-0.4
1,375,735	+				+0.0
1,375,735	+				-1.6
1,375,735	+				-0.2
1,375,740	+				+1.0
1,375,740	+				+0.0
1,375,798	+				+2.6
1,375,806	-				+0.4
1,375,815	+				+0.0
1,375,927	+				+1.0
1,375,935	-				-0.5
1,375,935	-				+0.0
1,375,936	+				+1.7
1,375,962	+				+2.6
1,375,991	-				-0.8
1,376,016	+				+0.6
1,376,016	+				-0.2
1,376,034	+				+1.0
1,376,034	+				-0.2
1,376,042	-				-0.7
1,376,103	+		CCNA_01248	0.17	+0.6
1,376,103	+		CCNA_01248	0.17	+1.6
1,376,104	+		CCNA_01248	0.17	-1.1
1,376,141	+		CCNA_01248	0.23	+2.3
1,376,149	-		CCNA_01248	0.25	+0.3
1,376,151	+		CCNA_01248	0.25	+0.3
1,376,151	+		CCNA_01248	0.25	+1.6
1,376,151	-		CCNA_01248	0.25	-0.2
1,376,159	-		CCNA_01248	0.26	-1.5
1,376,159	-		CCNA_01248	0.26	+0.6
1,376,159	-		CCNA_01248	0.26	+0.3
1,376,159	-		CCNA_01248	0.26	-0.2
1,376,175	-		CCNA_01248	0.29	+1.0
1,376,188	+		CCNA_01248	0.31	-0.5
1,376,188	+		CCNA_01248	0.31	-0.0
1,376,236	+		CCNA_01248	0.38	-2.1
1,376,239	-		CCNA_01248	0.39	-1.0
1,376,287	+		CCNA_01248	0.46	-1.0
1,376,302	+		CCNA_01248	0.49	+0.5
1,376,302	+		CCNA_01248	0.49	-1.2
1,376,310	-		CCNA_01248	0.50	+0.6
1,376,328	+		CCNA_01248	0.53	+2.5
1,376,328	+		CCNA_01248	0.53	+1.8
1,376,328	+		CCNA_01248	0.53	+4.6
1,376,328	+		CCNA_01248	0.53	+2.1
1,376,328	+		CCNA_01248	0.53	+2.9
1,376,328	+		CCNA_01248	0.53	+2.5
1,376,336	-		CCNA_01248	0.54	+1.6
1,376,336	-		CCNA_01248	0.54	-1.1
1,376,336	-		CCNA_01248	0.54	+0.6
1,376,344	+		CCNA_01248	0.55	+0.2
1,376,352	+		CCNA_01248	0.56	+1.6
1,376,357	+		CCNA_01248	0.57	+2.6
1,376,360	-		CCNA_01248	0.58	+0.6
1,376,370	+		CCNA_01248	0.59	-1.7
1,376,378	-		CCNA_01248	0.61	+0.9
1,376,396	+		CCNA_01248	0.63	-0.5
1,376,455	+		CCNA_01248	0.73	+0.2
1,376,590	+				+1.1
1,376,593	-				+0.6
1,376,617	+				+0.8
1,376,620	-				-0.2
1,376,623	+				+1.1
1,376,692	+				+0.4
1,376,710	+				+0.6
1,376,725	+		CCNA_01249	0.11	+3.6
1,376,733	-		CCNA_01249	0.12	-0.6
1,376,744	+		CCNA_01249	0.14	+1.3
1,376,751	+		CCNA_01249	0.15	-0.6
1,376,751	+		CCNA_01249	0.15	-0.2
1,376,751	+		CCNA_01249	0.15	-1.4
1,376,752	-		CCNA_01249	0.15	+1.0
1,376,752	-		CCNA_01249	0.15	+1.6
1,376,767	+		CCNA_01249	0.17	-0.9
1,376,788	+		CCNA_01249	0.19	+0.3
1,376,860	-		CCNA_01249	0.28	-1.0
1,376,920	+		CCNA_01249	0.36	-0.3
1,376,935	+		CCNA_01249	0.37	+0.6
1,376,935	+		CCNA_01249	0.37	-0.6
1,376,950	-		CCNA_01249	0.39	-1.2
1,376,995	-		CCNA_01249	0.45	+1.6
1,376,995	-		CCNA_01249	0.45	-0.4
1,377,030	-		CCNA_01249	0.49	+0.3
1,377,070	+		CCNA_01249	0.54	-0.6
1,377,078	-		CCNA_01249	0.55	-1.4
1,377,078	-		CCNA_01249	0.55	+1.6
1,377,078	-		CCNA_01249	0.55	+0.0
1,377,078	-		CCNA_01249	0.55	-0.2
1,377,078	-		CCNA_01249	0.55	+0.6
1,377,078	-		CCNA_01249	0.55	+0.3
1,377,078	-		CCNA_01249	0.55	-1.3
1,377,114	+		CCNA_01249	0.60	+2.0
1,377,114	+		CCNA_01249	0.60	+0.0
1,377,122	-		CCNA_01249	0.61	+0.6
1,377,122	-		CCNA_01249	0.61	+1.6
1,377,174	-				+2.6
1,377,331	-		CCNA_01249	0.86	-0.2
1,377,338	+		CCNA_01249	0.87	-1.0
1,377,346	-		CCNA_01249	0.88	-0.2
1,377,421	+				+0.8
1,377,429	-				+1.5
1,377,429	-				-1.7
1,377,441	+				+0.6
1,377,474	-				+1.3
1,377,495	+		CCNA_01250	0.11	-0.8
1,377,495	+		CCNA_01250	0.11	+0.0
1,377,524	+		CCNA_01250	0.14	+2.1
1,377,543	+		CCNA_01250	0.15	-0.5
1,377,546	-		CCNA_01250	0.16	+2.0
1,377,546	-		CCNA_01250	0.16	-0.4
1,377,560	+		CCNA_01250	0.17	+1.0
1,377,579	+		CCNA_01250	0.19	-1.3
1,377,579	+		CCNA_01250	0.19	-0.8
1,377,579	+		CCNA_01250	0.19	+2.0
1,377,587	-		CCNA_01250	0.20	+0.3
1,377,587	-		CCNA_01250	0.20	-2.3
1,377,587	-		CCNA_01250	0.20	+1.6
1,377,587	-		CCNA_01250	0.20	-1.3
1,377,587	-		CCNA_01250	0.20	+2.6
1,377,590	+		CCNA_01250	0.20	-1.1
1,377,624	-		CCNA_01250	0.23	+1.0
1,377,624	-		CCNA_01250	0.23	+0.3
1,377,624	-		CCNA_01250	0.23	-0.6
1,377,624	-		CCNA_01250	0.23	-1.2