Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01238

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,362,651	+		CCNA_01235	0.39	+3.6
1,362,651	+		CCNA_01235	0.39	+1.9
1,362,675	+		CCNA_01235	0.43	+3.4
1,362,683	-		CCNA_01235	0.44	+0.3
1,362,685	+		CCNA_01235	0.45	+3.4
1,362,687	+		CCNA_01235	0.45	+2.9
1,362,687	+		CCNA_01235	0.45	+2.8
1,362,695	-		CCNA_01235	0.46	-0.1
1,362,695	-		CCNA_01235	0.46	+0.7
1,362,756	+		CCNA_01235	0.56	+2.7
1,362,822	+		CCNA_01235	0.66	+3.2
1,362,822	+		CCNA_01235	0.66	+3.1
1,362,822	-		CCNA_01235	0.66	+0.1
1,362,827	+		CCNA_01235	0.67	+2.8
1,362,878	+		CCNA_01235	0.75	+2.7
1,362,896	+		CCNA_01235	0.78	+3.3
1,362,897	+		CCNA_01235	0.78	+2.9
1,362,916	+		CCNA_01235	0.81	+2.8
1,362,916	+		CCNA_01235	0.81	+2.9
1,362,924	-		CCNA_01235	0.82	+0.4
1,362,931	-		CCNA_01235	0.83	-0.5
1,362,961	-		CCNA_01235	0.88	-1.6
1,363,007	+				-0.8
1,363,011	+				+1.1
1,363,011	+				+0.2
1,363,011	+				+1.3
1,363,011	+				+0.9
1,363,015	-				+2.7
1,363,017	-				+0.1
1,363,019	-				-0.6
1,363,062	+				-1.3
1,363,063	+				+0.2
1,363,119	+				+0.6
1,363,134	+		CCNA_01236	0.15	+1.7
1,363,134	+		CCNA_01236	0.15	+1.1
1,363,142	-		CCNA_01236	0.18	-1.1
1,363,322	-				-0.3
1,363,385	+		CCNA_01237	0.37	-1.9
1,363,434	-		CCNA_01237	0.69	-0.9
1,363,450	-		CCNA_01237	0.79	+1.9
1,363,450	-		CCNA_01237	0.79	+0.3
1,363,484	-				-1.6
1,363,511	-				-0.3
1,363,559	+				+1.5
1,363,579	+				-0.1
1,363,581	+				-0.1
1,363,589	-				-0.5
1,363,589	-				-0.3
1,363,596	+				-0.1
1,363,729	-		CCNA_01238	0.13	-0.3
1,363,771	-		CCNA_01238	0.19	-1.6
1,363,773	-		CCNA_01238	0.19	+0.3
1,363,899	+		CCNA_01238	0.36	+0.7
1,363,899	+		CCNA_01238	0.36	-1.0
1,363,899	-		CCNA_01238	0.36	-0.1
1,363,955	-		CCNA_01238	0.44	-1.2
1,363,955	-		CCNA_01238	0.44	-1.0
1,364,061	+		CCNA_01238	0.58	+1.1
1,364,116	+		CCNA_01238	0.66	-0.7
1,364,116	+		CCNA_01238	0.66	-1.3
1,364,116	+		CCNA_01238	0.66	+0.1
1,364,116	+		CCNA_01238	0.66	+0.3
1,364,168	+		CCNA_01238	0.73	-0.6
1,364,268	+		CCNA_01238	0.87	+0.5
1,364,288	+		CCNA_01238	0.89	+1.1
1,364,322	-				+0.3
1,364,352	+				+2.7
1,364,360	-				-2.1
1,364,371	+				+2.7
1,364,380	-				+1.7
1,364,380	-				+0.3
1,364,390	-				-0.9
1,364,449	+				+0.3
1,364,467	-				+1.2
1,364,495	-				-0.9
1,364,584	+				-2.0
1,364,584	+				+2.0
1,364,584	+				-0.1
1,364,586	-				+0.2
1,364,599	+				-0.3
1,364,607	-				+1.2
1,364,643	-		CCNA_01239	0.12	-1.3
1,364,656	-		CCNA_01239	0.13	-0.1
1,364,668	+		CCNA_01239	0.13	+1.8
1,364,747	+		CCNA_01239	0.19	+0.3
1,364,747	+		CCNA_01239	0.19	+0.3
1,364,755	-		CCNA_01239	0.19	-0.6
1,364,776	-		CCNA_01239	0.21	+3.2
1,364,789	-		CCNA_01239	0.22	-1.3
1,364,791	-		CCNA_01239	0.22	+1.1
1,364,849	+		CCNA_01239	0.26	+1.1
1,364,891	-		CCNA_01239	0.29	+0.7
1,364,891	-		CCNA_01239	0.29	-0.3
1,364,894	+		CCNA_01239	0.29	+0.3
1,364,901	-		CCNA_01239	0.30	+0.5
1,364,947	-		CCNA_01239	0.33	-0.2
1,364,947	-		CCNA_01239	0.33	+0.7
1,364,961	+		CCNA_01239	0.34	+0.3
1,365,029	-		CCNA_01239	0.39	-1.8
1,365,055	+		CCNA_01239	0.40	-0.9
1,365,055	+		CCNA_01239	0.40	-1.7
1,365,063	-		CCNA_01239	0.41	+2.7
1,365,089	+		CCNA_01239	0.43	+0.7
1,365,089	+		CCNA_01239	0.43	+1.1
1,365,104	-		CCNA_01239	0.44	+0.4
1,365,186	+		CCNA_01239	0.50	+1.7
1,365,190	-		CCNA_01239	0.50	+0.9
1,365,200	-		CCNA_01239	0.51	+0.2
1,365,236	-		CCNA_01239	0.53	-1.0
1,365,263	+		CCNA_01239	0.55	+0.3
1,365,324	-		CCNA_01239	0.59	-1.3
1,365,337	+		CCNA_01239	0.60	-0.2
1,365,337	+		CCNA_01239	0.60	+0.2
1,365,345	-		CCNA_01239	0.61	-0.5