Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01225

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,351,125	+		CCNA_01224	0.30	+0.3
1,351,192	-		CCNA_01224	0.35	+1.7
1,351,472	-		CCNA_01224	0.56	+0.7
1,351,639	-		CCNA_01224	0.68	+1.7
1,351,754	-		CCNA_01224	0.77	+1.1
1,351,754	-		CCNA_01224	0.77	+1.1
1,351,754	-		CCNA_01224	0.77	+0.3
1,351,869	-		CCNA_01224	0.86	+1.7
1,351,968	-				+1.7
1,352,037	-				-2.3
1,352,076	-				-3.6
1,352,095	-				+0.4
1,352,145	+				+0.1
1,352,159	-				+1.2
1,352,186	+		CCNA_01225	0.11	+0.1
1,352,194	-		CCNA_01225	0.12	-1.5
1,352,194	-		CCNA_01225	0.12	+0.7
1,352,222	+		CCNA_01225	0.15	+0.1
1,352,222	+		CCNA_01225	0.15	+2.7
1,352,222	+		CCNA_01225	0.15	+2.7
1,352,230	-		CCNA_01225	0.15	+1.1
1,352,230	-		CCNA_01225	0.15	+0.9
1,352,230	-		CCNA_01225	0.15	-0.3
1,352,230	-		CCNA_01225	0.15	+1.4
1,352,238	-		CCNA_01225	0.16	+0.3
1,352,303	+		CCNA_01225	0.22	+1.1
1,352,313	-		CCNA_01225	0.23	-0.1
1,352,381	-		CCNA_01225	0.29	-0.1
1,352,390	+		CCNA_01225	0.30	+1.7
1,352,514	-		CCNA_01225	0.41	+1.7
1,352,542	-		CCNA_01225	0.43	+1.2
1,352,585	-		CCNA_01225	0.47	+2.4
1,352,585	-		CCNA_01225	0.47	+0.3
1,352,594	+		CCNA_01225	0.48	+0.1
1,352,675	+		CCNA_01225	0.55	+4.2
1,352,685	+		CCNA_01225	0.56	-1.6
1,352,693	-		CCNA_01225	0.56	+0.1
1,352,698	-		CCNA_01225	0.57	-1.3
1,352,702	+		CCNA_01225	0.57	+0.1
1,352,734	+		CCNA_01225	0.60	+1.8
1,352,742	-		CCNA_01225	0.61	+1.1
1,352,748	+		CCNA_01225	0.61	-0.8
1,352,756	-		CCNA_01225	0.62	+2.3
1,352,758	+		CCNA_01225	0.62	+0.5
1,352,767	+		CCNA_01225	0.63	+0.7
1,352,776	-		CCNA_01225	0.64	+2.6
1,352,779	+		CCNA_01225	0.64	+2.5
1,352,787	-		CCNA_01225	0.65	+0.6
1,352,817	+		CCNA_01225	0.67	+1.2
1,352,817	+		CCNA_01225	0.67	+0.3
1,352,817	+		CCNA_01225	0.67	+0.5
1,352,817	+		CCNA_01225	0.67	-1.3
1,352,818	-		CCNA_01225	0.67	+1.7
1,352,825	-		CCNA_01225	0.68	+0.0
1,352,825	-		CCNA_01225	0.68	+2.9
1,352,825	-		CCNA_01225	0.68	+2.1
1,352,825	-		CCNA_01225	0.68	+1.9
1,352,825	-		CCNA_01225	0.68	+0.0
1,352,825	-		CCNA_01225	0.68	-0.4
1,352,842	+		CCNA_01225	0.70	+1.0
1,352,850	-		CCNA_01225	0.70	+1.6
1,352,850	-		CCNA_01225	0.70	+1.8
1,352,860	-		CCNA_01225	0.71	+2.8
1,352,868	-		CCNA_01225	0.72	+3.3
1,352,868	-		CCNA_01225	0.72	+4.9
1,352,872	+		CCNA_01225	0.72	+0.6
1,352,877	+		CCNA_01225	0.73	+0.3
1,352,885	-		CCNA_01225	0.73	+1.2
1,352,934	+		CCNA_01225	0.78	-1.0
1,352,979	+		CCNA_01225	0.82	-3.0
1,353,057	-		CCNA_01225	0.89	+3.4
1,353,057	-		CCNA_01225	0.89	+2.5
1,353,057	-		CCNA_01225	0.89	+5.8
1,353,077	-				+2.1
1,353,083	-				+2.2
1,353,121	+				+2.3
1,353,125	+				-0.5
1,353,129	-				+2.7
1,353,134	-				+1.7
1,353,150	+				-0.1
1,353,174	+				+1.1
1,353,182	-				+4.3
1,353,182	-				+5.1
1,353,192	-				+2.8
1,353,192	-				+3.8
1,353,200	+				+0.3
1,353,225	-				+2.2
1,353,230	-				+1.7
1,353,230	-				+1.1
1,353,254	+		CCNA_01226	0.11	+1.1
1,353,262	-		CCNA_01226	0.12	+2.9
1,353,379	-		CCNA_01226	0.30	+0.5
1,353,385	+		CCNA_01226	0.31	+0.1
1,353,412	-		CCNA_01226	0.36	+2.5
1,353,468	-		CCNA_01226	0.45	+1.9
1,353,468	-		CCNA_01226	0.45	+3.8
1,353,480	-		CCNA_01226	0.46	+3.2
1,353,480	-		CCNA_01226	0.46	+3.5
1,353,480	-		CCNA_01226	0.46	+1.8
1,353,485	-		CCNA_01226	0.47	-0.1
1,353,491	+		CCNA_01226	0.48	+0.7
1,353,521	-		CCNA_01226	0.53	+0.4
1,353,560	-		CCNA_01226	0.59	+3.6
1,353,603	-		CCNA_01226	0.66	+0.7
1,353,604	+		CCNA_01226	0.66	+5.1
1,353,631	+		CCNA_01226	0.70	+1.7
1,353,638	-		CCNA_01226	0.71	+2.3
1,353,638	-		CCNA_01226	0.71	+1.7
1,353,651	-		CCNA_01226	0.73	+2.7
1,353,660	-		CCNA_01226	0.75	+1.7
1,353,713	+		CCNA_01226	0.83	+0.7
1,353,736	+		CCNA_01226	0.87	+0.7
1,353,817	-				-0.7
1,353,817	-				+0.1
1,353,829	+				+1.1
1,353,829	+				+1.9
1,353,852	+				+2.0
1,353,874	+				-0.1
1,353,928	+				-1.9
1,353,936	-				-2.0
1,353,975	-				+0.3
1,353,989	+				+0.8
1,354,011	+				-1.2
1,354,022	+				+2.1
1,354,082	+				+3.8
1,354,089	+		CCNA_01227	0.10	+1.3
1,354,089	+		CCNA_01227	0.10	-0.7
1,354,089	+		CCNA_01227	0.10	-0.5
1,354,094	+		CCNA_01227	0.11	+0.2
1,354,097	-		CCNA_01227	0.11	-1.7
1,354,097	-		CCNA_01227	0.11	+0.3
1,354,102	-		CCNA_01227	0.11	-0.1