Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01223

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,348,172	+		CCNA_01222	0.11	-0.6
1,348,193	+		CCNA_01222	0.14	-0.2
1,348,205	+		CCNA_01222	0.15	+1.0
1,348,206	+		CCNA_01222	0.15	+1.0
1,348,206	+		CCNA_01222	0.15	+2.6
1,348,214	-		CCNA_01222	0.16	+0.0
1,348,222	+		CCNA_01222	0.17	+0.0
1,348,230	-		CCNA_01222	0.18	+2.6
1,348,323	-		CCNA_01222	0.27	+3.8
1,348,333	-		CCNA_01222	0.28	+4.9
1,348,333	-		CCNA_01222	0.28	+2.4
1,348,366	-		CCNA_01222	0.32	+0.8
1,348,401	+		CCNA_01222	0.35	-0.2
1,348,459	+		CCNA_01222	0.42	+0.0
1,348,467	-		CCNA_01222	0.42	+3.0
1,348,525	-		CCNA_01222	0.48	+3.5
1,348,525	-		CCNA_01222	0.48	+2.9
1,348,527	+		CCNA_01222	0.49	+1.6
1,348,553	-		CCNA_01222	0.51	+1.0
1,348,553	-		CCNA_01222	0.51	+2.5
1,348,616	+		CCNA_01222	0.58	-0.8
1,348,662	+		CCNA_01222	0.63	+1.6
1,348,677	-		CCNA_01222	0.64	+3.9
1,348,717	-		CCNA_01222	0.69	+2.4
1,348,746	+		CCNA_01222	0.72	+4.4
1,348,755	+		CCNA_01222	0.73	-0.2
1,348,763	+		CCNA_01222	0.73	+0.8
1,348,800	-		CCNA_01222	0.77	+3.9
1,348,820	-		CCNA_01222	0.79	+4.8
1,348,825	-		CCNA_01222	0.80	+2.8
1,348,837	-		CCNA_01222	0.81	+2.6
1,348,867	-		CCNA_01222	0.84	+2.6
1,348,880	-		CCNA_01222	0.86	+2.6
1,349,012	-				+2.5
1,349,045	-				+1.6
1,349,073	+				+0.3
1,349,073	+				+0.6
1,349,080	-				+3.0
1,349,081	-				+4.3
1,349,081	-				+3.5
1,349,081	-				+2.6
1,349,081	-				+2.9
1,349,192	+		CCNA_01223	0.11	-1.0
1,349,205	+		CCNA_01223	0.12	-0.5
1,349,261	+		CCNA_01223	0.15	+2.6
1,349,307	+		CCNA_01223	0.18	+4.5
1,349,333	+		CCNA_01223	0.19	+1.0
1,349,526	+		CCNA_01223	0.30	+1.7
1,349,536	+		CCNA_01223	0.31	+0.3
1,349,538	+		CCNA_01223	0.31	+0.5
1,349,544	-		CCNA_01223	0.31	+2.9
1,349,565	-		CCNA_01223	0.33	+2.9
1,349,599	-		CCNA_01223	0.34	+2.5
1,349,660	+		CCNA_01223	0.38	+0.0
1,349,661	+		CCNA_01223	0.38	+1.6
1,349,667	+		CCNA_01223	0.38	+2.6
1,349,667	+		CCNA_01223	0.38	+0.8
1,349,668	-		CCNA_01223	0.39	+2.7
1,349,675	-		CCNA_01223	0.39	+4.0
1,349,675	-		CCNA_01223	0.39	+3.6
1,349,675	-		CCNA_01223	0.39	+3.3
1,349,675	-		CCNA_01223	0.39	+2.6
1,349,698	+		CCNA_01223	0.40	+2.6
1,349,701	-		CCNA_01223	0.40	+3.8
1,349,701	-		CCNA_01223	0.40	+3.1
1,349,701	-		CCNA_01223	0.40	+2.8
1,349,707	+		CCNA_01223	0.41	+1.1
1,349,710	-		CCNA_01223	0.41	+3.4
1,349,720	-		CCNA_01223	0.42	+3.3
1,349,770	-		CCNA_01223	0.44	+2.9
1,349,770	-		CCNA_01223	0.44	+3.1
1,349,807	+		CCNA_01223	0.47	-0.7
1,349,807	+		CCNA_01223	0.47	+0.2
1,349,812	+		CCNA_01223	0.47	+0.6
1,349,815	-		CCNA_01223	0.47	+2.6
1,349,815	-		CCNA_01223	0.47	+4.0
1,349,815	-		CCNA_01223	0.47	+4.2
1,349,820	-		CCNA_01223	0.47	+1.6
1,349,914	+		CCNA_01223	0.53	+2.2
1,349,916	+		CCNA_01223	0.53	+1.6
1,349,935	+		CCNA_01223	0.54	+3.3
1,350,037	+		CCNA_01223	0.60	+1.0
1,350,039	-		CCNA_01223	0.60	+3.4
1,350,071	+		CCNA_01223	0.62	+1.8
1,350,078	+		CCNA_01223	0.62	-0.2
1,350,086	-		CCNA_01223	0.63	+3.0
1,350,093	-		CCNA_01223	0.63	+2.2
1,350,122	-		CCNA_01223	0.65	+0.6
1,350,157	+		CCNA_01223	0.67	+0.2
1,350,189	+		CCNA_01223	0.69	+2.6
1,350,218	-		CCNA_01223	0.71	+4.7
1,350,223	-		CCNA_01223	0.71	+0.0
1,350,225	+		CCNA_01223	0.71	+0.6
1,350,266	+		CCNA_01223	0.73	-1.1
1,350,266	+		CCNA_01223	0.73	-0.4
1,350,274	-		CCNA_01223	0.74	+3.9
1,350,274	-		CCNA_01223	0.74	+4.4
1,350,274	-		CCNA_01223	0.74	+2.5
1,350,324	+		CCNA_01223	0.77	+0.6
1,350,330	+		CCNA_01223	0.77	+1.6
1,350,331	-		CCNA_01223	0.77	+3.7
1,350,335	+		CCNA_01223	0.77	+0.6
1,350,363	-		CCNA_01223	0.79	+4.1
1,350,363	-		CCNA_01223	0.79	+3.0
1,350,367	+		CCNA_01223	0.79	+0.0
1,350,380	-		CCNA_01223	0.80	+3.5
1,350,406	-		CCNA_01223	0.81	+3.4
1,350,451	-		CCNA_01223	0.84	+2.9
1,350,482	-		CCNA_01223	0.86	+2.6
1,350,504	+		CCNA_01223	0.87	+1.6
1,350,505	-		CCNA_01223	0.87	+1.5
1,350,559	+				+2.5
1,350,559	+				-1.3
1,350,569	+				+1.2
1,350,572	-				+4.0
1,350,572	-				+1.3
1,350,572	-				+3.6
1,350,577	-				+5.4
1,350,584	-				+3.3
1,350,584	-				+3.4
1,350,600	+				+0.0
1,350,608	-				+1.3
1,350,650	+				+2.2
1,350,734	-				-2.5
1,350,756	-				-3.2
1,350,798	-				+0.3
1,351,125	+		CCNA_01224	0.30	+0.3
1,351,192	-		CCNA_01224	0.35	+1.7
1,351,472	-		CCNA_01224	0.56	+0.7
1,351,639	-		CCNA_01224	0.68	+1.7