Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01216

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,341,790	-		CCNA_01214	0.83	+1.7
1,341,880	-				+1.2
1,341,964	-				+2.7
1,341,973	+				+1.2
1,341,981	-				+0.6
1,342,010	-				+2.0
1,342,013	-				+1.4
1,342,037	-				+1.9
1,342,042	-		CCNA_01215	0.11	+1.2
1,342,073	-		CCNA_01215	0.18	+2.0
1,342,083	-		CCNA_01215	0.20	+1.1
1,342,083	-		CCNA_01215	0.20	+2.7
1,342,123	-		CCNA_01215	0.29	+3.4
1,342,194	-		CCNA_01215	0.45	+0.6
1,342,242	-		CCNA_01215	0.56	+1.3
1,342,247	-		CCNA_01215	0.58	-0.0
1,342,256	+		CCNA_01215	0.60	+0.1
1,342,295	+		CCNA_01215	0.68	+1.7
1,342,303	-		CCNA_01215	0.70	-0.8
1,342,316	+		CCNA_01215	0.73	+1.0
1,342,344	+		CCNA_01215	0.80	+0.7
1,342,363	-		CCNA_01215	0.84	+1.3
1,342,368	-		CCNA_01215	0.85	+1.5
1,342,387	+		CCNA_01215	0.89	+1.1
1,342,387	+		CCNA_01215	0.89	-0.5
1,342,395	-				+1.1
1,342,395	-				+2.2
1,342,395	-				+1.2
1,342,395	-				-0.9
1,342,395	-				+1.0
1,342,395	-				+1.2
1,342,395	-				+3.2
1,342,404	+				-0.9
1,342,491	+				+1.7
1,342,496	+				-0.1
1,342,496	+				+2.5
1,342,535	+				+1.7
1,342,541	+				+2.4
1,342,546	+				-0.7
1,342,558	+				+1.1
1,342,558	+				-2.5
1,342,566	-				-1.5
1,342,566	-				-1.4
1,342,573	+				+0.1
1,342,581	-				+0.3
1,342,581	-				+0.5
1,342,610	-				+2.8
1,342,676	-		CCNA_01216	0.15	+2.0
1,342,692	+		CCNA_01216	0.17	-0.0
1,342,700	-		CCNA_01216	0.18	+2.6
1,342,720	-		CCNA_01216	0.20	+3.5
1,342,727	-		CCNA_01216	0.21	+0.3
1,342,727	-		CCNA_01216	0.21	+2.7
1,342,770	+		CCNA_01216	0.25	+0.7
1,342,783	-		CCNA_01216	0.27	+0.5
1,342,826	+		CCNA_01216	0.31	+1.7
1,342,826	+		CCNA_01216	0.31	+1.7
1,342,855	-		CCNA_01216	0.35	+2.7
1,342,877	-		CCNA_01216	0.37	+3.5
1,342,877	-		CCNA_01216	0.37	+1.1
1,342,879	-		CCNA_01216	0.37	+2.2
1,342,909	-		CCNA_01216	0.40	+1.7
1,342,914	-		CCNA_01216	0.41	+2.7
1,342,928	+		CCNA_01216	0.42	+1.1
1,342,936	-		CCNA_01216	0.43	+2.8
1,342,940	+		CCNA_01216	0.44	-1.6
1,342,946	-		CCNA_01216	0.44	+2.0
1,342,948	-		CCNA_01216	0.45	+0.1
1,342,961	-		CCNA_01216	0.46	+1.1
1,342,961	-		CCNA_01216	0.46	+3.1
1,342,967	+		CCNA_01216	0.47	+0.3
1,342,972	+		CCNA_01216	0.47	+3.0
1,343,010	+		CCNA_01216	0.51	-0.1
1,343,054	-		CCNA_01216	0.56	+4.2
1,343,093	+		CCNA_01216	0.60	+0.3
1,343,093	-		CCNA_01216	0.60	+3.8
1,343,138	+		CCNA_01216	0.65	+0.3
1,343,242	-		CCNA_01216	0.77	+1.8
1,343,274	-		CCNA_01216	0.80	+1.7
1,343,290	-		CCNA_01216	0.82	+1.2
1,343,307	+		CCNA_01216	0.84	+0.1
1,343,315	-		CCNA_01216	0.85	+1.4
1,343,321	+		CCNA_01216	0.85	+1.7
1,343,321	+		CCNA_01216	0.85	-0.7
1,343,321	+		CCNA_01216	0.85	-0.1
1,343,321	+		CCNA_01216	0.85	+2.9
1,343,321	+		CCNA_01216	0.85	+2.7
1,343,329	-		CCNA_01216	0.86	-0.2
1,343,329	-		CCNA_01216	0.86	+0.7
1,343,389	+				+2.7
1,343,389	+				-1.9
1,343,397	-				+1.9
1,343,431	+				+1.7
1,343,451	+				-0.3
1,343,482	+				-0.7
1,343,490	-				-0.5
1,343,500	-				+2.6
1,343,509	+				+1.1
1,343,512	-				+6.4
1,343,517	-				-1.6
1,343,518	+				-0.0
1,343,526	-				+0.1
1,343,528	-				+1.7
1,343,537	-				+0.0
1,343,627	+				+1.5
1,343,638	+				+3.9
1,343,649	+		CCNA_01217	0.10	+3.7
1,343,688	-		CCNA_01217	0.14	+1.3
1,343,754	+		CCNA_01217	0.20	+3.4
1,343,754	+		CCNA_01217	0.20	+3.4
1,343,762	-		CCNA_01217	0.20	-0.5
1,343,807	+		CCNA_01217	0.24	+4.1
1,343,854	+		CCNA_01217	0.29	+2.3
1,343,901	+		CCNA_01217	0.33	+3.8
1,343,901	+		CCNA_01217	0.33	+3.1
1,343,901	+		CCNA_01217	0.33	+3.5
1,343,901	+		CCNA_01217	0.33	+2.8
1,343,901	+		CCNA_01217	0.33	+2.2
1,343,901	+		CCNA_01217	0.33	+2.7
1,343,901	+		CCNA_01217	0.33	+3.7
1,343,901	+		CCNA_01217	0.33	+3.3
1,343,901	+		CCNA_01217	0.33	+3.3
1,343,901	+		CCNA_01217	0.33	+3.8
1,343,901	+		CCNA_01217	0.33	+2.9
1,343,901	+		CCNA_01217	0.33	+3.2
1,343,901	+		CCNA_01217	0.33	+3.7
1,343,901	+		CCNA_01217	0.33	+4.1
1,343,901	+		CCNA_01217	0.33	+3.1
1,343,901	+		CCNA_01217	0.33	+2.1
1,343,901	+		CCNA_01217	0.33	+4.4
1,343,901	+		CCNA_01217	0.33	+2.9
1,343,901	+		CCNA_01217	0.33	+2.7
1,343,901	+		CCNA_01217	0.33	+3.8
1,343,901	+		CCNA_01217	0.33	+3.9
1,343,901	+		CCNA_01217	0.33	+2.7
1,343,901	+		CCNA_01217	0.33	+3.4
1,343,901	+		CCNA_01217	0.33	+4.1
1,343,909	-		CCNA_01217	0.33	+2.7
1,343,909	-		CCNA_01217	0.33	+3.1
1,343,909	-		CCNA_01217	0.33	+1.7
1,343,909	-		CCNA_01217	0.33	-1.9
1,343,909	-		CCNA_01217	0.33	+2.1
1,343,909	-		CCNA_01217	0.33	+0.7
1,343,909	-		CCNA_01217	0.33	-0.2
1,343,909	-		CCNA_01217	0.33	+1.7
1,343,937	+		CCNA_01217	0.36	+3.9
1,343,973	+		CCNA_01217	0.39	+4.2
1,343,973	+		CCNA_01217	0.39	+2.7
1,343,987	+		CCNA_01217	0.40	+2.7
1,343,987	+		CCNA_01217	0.40	+2.4
1,344,027	+		CCNA_01217	0.44	+2.9
1,344,062	-		CCNA_01217	0.47	+4.1
1,344,143	+		CCNA_01217	0.54	+3.0
1,344,156	+		CCNA_01217	0.55	+3.0
1,344,168	+		CCNA_01217	0.56	+3.2
1,344,168	+		CCNA_01217	0.56	+2.9
1,344,168	+		CCNA_01217	0.56	+2.3
1,344,173	+		CCNA_01217	0.57	+2.9
1,344,178	+		CCNA_01217	0.57	+3.2
1,344,178	+		CCNA_01217	0.57	+3.0
1,344,207	+		CCNA_01217	0.60	+4.8
1,344,229	-		CCNA_01217	0.62	+1.1
1,344,231	+		CCNA_01217	0.62	+3.9
1,344,241	+		CCNA_01217	0.63	+3.7
1,344,361	+		CCNA_01217	0.73	+3.1
1,344,397	+		CCNA_01217	0.77	+3.3
1,344,425	+		CCNA_01217	0.79	+2.2