Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01081

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,183,907	-		CCNA_01078	0.89	-2.3
1,183,927	+				-2.4
1,183,946	+				+1.0
1,183,981	+				-0.9
1,184,002	-				-2.7
1,184,030	+				+1.6
1,184,030	+				-0.7
1,184,032	-		CCNA_01079	0.10	+0.9
1,184,038	-		CCNA_01079	0.14	-0.9
1,184,038	-		CCNA_01079	0.14	+1.6
1,184,038	-		CCNA_01079	0.14	-1.2
1,184,038	-		CCNA_01079	0.14	+1.3
1,184,057	+		CCNA_01079	0.24	+1.0
1,184,073	-		CCNA_01079	0.33	+0.7
1,184,088	+		CCNA_01079	0.42	+0.3
1,184,088	+		CCNA_01079	0.42	-2.2
1,184,096	-		CCNA_01079	0.46	-1.1
1,184,105	+		CCNA_01079	0.51	+1.0
1,184,120	+		CCNA_01079	0.60	-1.4
1,184,145	+		CCNA_01079	0.74	-2.1
1,184,145	+		CCNA_01079	0.74	-0.2
1,184,153	-		CCNA_01079	0.79	-1.9
1,184,198	+				+0.3
1,184,206	-				+4.2
1,184,244	+				+0.7
1,184,279	+				+1.4
1,184,320	+		CCNA_01080	0.12	-1.0
1,184,325	+		CCNA_01080	0.13	-0.4
1,184,334	-		CCNA_01080	0.14	-0.0
1,184,368	+		CCNA_01080	0.20	-0.0
1,184,371	-		CCNA_01080	0.21	-0.9
1,184,379	+		CCNA_01080	0.22	-2.0
1,184,394	+		CCNA_01080	0.25	+2.6
1,184,399	+		CCNA_01080	0.26	+2.0
1,184,399	+		CCNA_01080	0.26	+1.1
1,184,408	+		CCNA_01080	0.27	+2.2
1,184,412	-		CCNA_01080	0.28	-0.0
1,184,419	+		CCNA_01080	0.29	-2.4
1,184,424	+		CCNA_01080	0.30	-0.6
1,184,424	+		CCNA_01080	0.30	-1.5
1,184,432	-		CCNA_01080	0.32	-1.0
1,184,438	+		CCNA_01080	0.33	+1.4
1,184,465	+		CCNA_01080	0.37	-0.6
1,184,491	+		CCNA_01080	0.42	+0.8
1,184,499	-		CCNA_01080	0.43	+0.3
1,184,524	+		CCNA_01080	0.48	-0.7
1,184,524	+		CCNA_01080	0.48	+1.3
1,184,524	+		CCNA_01080	0.48	-1.7
1,184,524	+		CCNA_01080	0.48	-1.8
1,184,524	+		CCNA_01080	0.48	+1.4
1,184,524	+		CCNA_01080	0.48	+0.2
1,184,524	+		CCNA_01080	0.48	+0.4
1,184,524	+		CCNA_01080	0.48	+3.2
1,184,524	+		CCNA_01080	0.48	-3.1
1,184,524	+		CCNA_01080	0.48	+1.2
1,184,524	+		CCNA_01080	0.48	-0.9
1,184,524	+		CCNA_01080	0.48	+1.0
1,184,524	+		CCNA_01080	0.48	-1.7
1,184,524	+		CCNA_01080	0.48	-2.3
1,184,524	-		CCNA_01080	0.48	+0.3
1,184,530	-		CCNA_01080	0.49	-0.7
1,184,532	-		CCNA_01080	0.49	-2.0
1,184,532	-		CCNA_01080	0.49	+1.6
1,184,532	-		CCNA_01080	0.49	-1.7
1,184,532	-		CCNA_01080	0.49	-2.5
1,184,532	-		CCNA_01080	0.49	+0.6
1,184,532	-		CCNA_01080	0.49	-0.2
1,184,532	-		CCNA_01080	0.49	+1.0
1,184,532	-		CCNA_01080	0.49	-0.4
1,184,532	-		CCNA_01080	0.49	+2.3
1,184,532	-		CCNA_01080	0.49	-1.4
1,184,532	-		CCNA_01080	0.49	+1.4
1,184,534	+		CCNA_01080	0.50	+2.8
1,184,537	-		CCNA_01080	0.50	-1.8
1,184,542	-		CCNA_01080	0.51	-0.2
1,184,580	+		CCNA_01080	0.58	-0.7
1,184,612	-		CCNA_01080	0.63	-2.0
1,184,619	+		CCNA_01080	0.65	-0.2
1,184,680	+		CCNA_01080	0.76	+0.9
1,184,688	-		CCNA_01080	0.77	+1.3
1,184,707	-		CCNA_01080	0.80	-2.2
1,184,713	+		CCNA_01080	0.81	+1.0
1,184,754	-		CCNA_01080	0.89	-0.9
1,184,756	-		CCNA_01080	0.89	-1.8
1,184,756	-		CCNA_01080	0.89	-0.4
1,184,791	+				-1.0
1,184,803	+				+2.0
1,184,859	+				+0.6
1,184,886	+				-0.1
1,184,894	-				-1.8
1,184,904	-				-1.6
1,184,927	+				+1.6
1,184,927	+				+0.6
1,184,937	+				+1.4
1,184,945	-				+2.6
1,184,955	-		CCNA_01081	0.12	+0.8
1,184,962	+		CCNA_01081	0.13	+1.4
1,184,970	-		CCNA_01081	0.14	-0.5
1,184,977	+		CCNA_01081	0.15	+1.7
1,184,977	+		CCNA_01081	0.15	-1.5
1,184,982	+		CCNA_01081	0.15	+0.4
1,184,985	-		CCNA_01081	0.16	+1.3
1,184,990	-		CCNA_01081	0.16	+1.0
1,185,005	-		CCNA_01081	0.18	+1.9
1,185,037	-		CCNA_01081	0.22	-1.4
1,185,037	-		CCNA_01081	0.22	-0.3
1,185,037	-		CCNA_01081	0.22	-1.7
1,185,053	-		CCNA_01081	0.24	-0.0
1,185,100	+		CCNA_01081	0.30	-1.6
1,185,102	-		CCNA_01081	0.31	+0.6
1,185,106	+		CCNA_01081	0.31	+0.5
1,185,114	-		CCNA_01081	0.32	-0.0
1,185,123	+		CCNA_01081	0.33	+1.9
1,185,126	-		CCNA_01081	0.34	-0.1
1,185,176	-		CCNA_01081	0.40	-1.4
1,185,195	+		CCNA_01081	0.43	+2.0
1,185,195	+		CCNA_01081	0.43	+0.3
1,185,195	+		CCNA_01081	0.43	+0.2
1,185,195	+		CCNA_01081	0.43	-0.6
1,185,198	-		CCNA_01081	0.43	-2.7
1,185,202	+		CCNA_01081	0.43	-1.0
1,185,202	+		CCNA_01081	0.43	+0.6
1,185,203	+		CCNA_01081	0.44	-1.1
1,185,203	-		CCNA_01081	0.44	-2.7
1,185,203	-		CCNA_01081	0.44	-0.0
1,185,204	+		CCNA_01081	0.44	-0.7
1,185,212	-		CCNA_01081	0.45	-0.7
1,185,212	-		CCNA_01081	0.45	+1.0
1,185,230	-		CCNA_01081	0.47	-1.7
1,185,230	-		CCNA_01081	0.47	+0.6
1,185,237	+		CCNA_01081	0.48	+0.5
1,185,237	+		CCNA_01081	0.48	+1.0
1,185,237	+		CCNA_01081	0.48	+2.4
1,185,263	+		CCNA_01081	0.51	+2.6
1,185,275	-		CCNA_01081	0.53	-1.7
1,185,277	+		CCNA_01081	0.53	-1.1
1,185,300	+		CCNA_01081	0.56	-1.2
1,185,315	-		CCNA_01081	0.58	-1.1
1,185,315	-		CCNA_01081	0.58	+0.3
1,185,328	+		CCNA_01081	0.60	-1.3
1,185,336	-		CCNA_01081	0.61	-1.4
1,185,336	-		CCNA_01081	0.61	-0.5
1,185,336	-		CCNA_01081	0.61	+1.6
1,185,336	-		CCNA_01081	0.61	-1.8
1,185,387	+		CCNA_01081	0.67	+1.9
1,185,394	-		CCNA_01081	0.68	+1.0
1,185,399	-		CCNA_01081	0.69	-1.5
1,185,401	+		CCNA_01081	0.69	-0.2
1,185,436	-		CCNA_01081	0.73	-1.4
1,185,453	-		CCNA_01081	0.76	+3.2
1,185,480	+		CCNA_01081	0.79	+0.5
1,185,491	+		CCNA_01081	0.81	+1.5
1,185,499	-		CCNA_01081	0.82	-0.6
1,185,528	+		CCNA_01081	0.85	+0.3
1,185,528	+		CCNA_01081	0.85	+0.5
1,185,528	+		CCNA_01081	0.85	-0.7
1,185,528	+		CCNA_01081	0.85	-0.9
1,185,536	-		CCNA_01081	0.86	-0.4
1,185,536	-		CCNA_01081	0.86	+0.6
1,185,536	-		CCNA_01081	0.86	-1.1
1,185,549	+		CCNA_01081	0.88	+1.0
1,185,549	+		CCNA_01081	0.88	+1.1
1,185,549	+		CCNA_01081	0.88	+2.8
1,185,549	+		CCNA_01081	0.88	+2.0
1,185,549	+				+1.0
1,185,549	+		CCNA_01081	0.88	+0.1
1,185,549	+		CCNA_01081	0.88	-0.4
1,185,549	+		CCNA_01081	0.88	+1.1
1,185,549	+		CCNA_01081	0.88	-0.4
1,185,549	+		CCNA_01081	0.88	-1.1
1,185,556	+		CCNA_01081	0.89	+0.6
1,185,557	-		CCNA_01081	0.89	-1.4
1,185,557	-		CCNA_01081	0.89	-0.2
1,185,557	-		CCNA_01081	0.89	-0.7
1,185,557	-		CCNA_01081	0.89	-0.7
1,185,557	-		CCNA_01081	0.89	+1.0
1,185,557	-		CCNA_01081	0.89	+0.8
1,185,557	-		CCNA_01081	0.89	-2.4
1,185,557	-		CCNA_01081	0.89	+0.9
1,185,557	-		CCNA_01081	0.89	-0.4
1,185,557	-		CCNA_01081	0.89	-3.0
1,185,564	-		CCNA_01081	0.90	-0.9
1,185,587	+				+2.3
1,185,594	+				-0.0
1,185,595	-				+0.6
1,185,595	-				+0.6
1,185,629	-				+0.3
1,185,643	+				+1.0
1,185,646	-				+0.7
1,185,663	-				-0.2
1,185,684	+				-1.4
1,185,736	-				+1.6
1,185,751	+				+0.6
1,185,752	+				-0.5
1,185,755	-				+0.6
1,185,759	-				-0.6
1,185,773	+		CCNA_01082	0.11	+0.3
1,185,773	+		CCNA_01082	0.11	-1.6
1,185,778	+		CCNA_01082	0.11	+0.3
1,185,792	-		CCNA_01082	0.12	-2.3
1,185,844	-		CCNA_01082	0.17	-1.2
1,185,851	+		CCNA_01082	0.18	+1.0
1,185,874	-		CCNA_01082	0.20	+0.6
1,185,914	-		CCNA_01082	0.24	-1.6
1,185,920	-		CCNA_01082	0.25	-2.1
1,185,937	-		CCNA_01082	0.26	-0.4
1,185,937	-		CCNA_01082	0.26	+1.6
1,185,962	+		CCNA_01082	0.29	-1.5
1,185,962	+		CCNA_01082	0.29	-2.1
1,185,962	+		CCNA_01082	0.29	-2.1
1,185,968	+		CCNA_01082	0.29	+0.6
1,185,970	-		CCNA_01082	0.30	-2.2
1,185,970	-		CCNA_01082	0.30	-1.1
1,185,970	-		CCNA_01082	0.30	-0.6
1,185,970	-		CCNA_01082	0.30	-1.7
1,185,985	-		CCNA_01082	0.31	-0.4
1,185,985	-		CCNA_01082	0.31	-0.8
1,186,012	+		CCNA_01082	0.34	+0.3
1,186,012	+		CCNA_01082	0.34	+0.6
1,186,020	-		CCNA_01082	0.34	-1.7
1,186,020	-		CCNA_01082	0.34	-1.9
1,186,028	+		CCNA_01082	0.35	+0.6
1,186,034	+		CCNA_01082	0.36	+0.6
1,186,034	+		CCNA_01082	0.36	-0.7
1,186,034	+		CCNA_01082	0.36	-0.2
1,186,036	-		CCNA_01082	0.36	+3.6
1,186,042	-		CCNA_01082	0.37	-0.2
1,186,042	-		CCNA_01082	0.37	-1.3
1,186,094	+		CCNA_01082	0.42	-0.7
1,186,105	-		CCNA_01082	0.43	-0.9
1,186,119	-		CCNA_01082	0.44	+1.6
1,186,140	+		CCNA_01082	0.46	-1.4
1,186,201	+		CCNA_01082	0.52	-1.2
1,186,270	-		CCNA_01082	0.59	-1.4
1,186,278	-		CCNA_01082	0.59	-0.6
1,186,303	+		CCNA_01082	0.62	+1.9
1,186,356	+		CCNA_01082	0.67	-1.5
1,186,364	-		CCNA_01082	0.68	-0.0
1,186,365	+		CCNA_01082	0.68	-0.2
1,186,379	+		CCNA_01082	0.69	-0.0
1,186,440	+		CCNA_01082	0.75	-0.6
1,186,457	+		CCNA_01082	0.77	+0.6
1,186,457	+		CCNA_01082	0.77	-1.6
1,186,457	+		CCNA_01082	0.77	-0.7
1,186,457	+		CCNA_01082	0.77	+1.0
1,186,457	+		CCNA_01082	0.77	+0.6
1,186,508	+		CCNA_01082	0.82	+0.3
1,186,518	+		CCNA_01082	0.83	-0.6
1,186,546	+		CCNA_01082	0.85	+0.6
1,186,554	-		CCNA_01082	0.86	-1.1
1,186,568	+		CCNA_01082	0.87	-0.4
1,186,569	+		CCNA_01082	0.87	-0.4
1,186,576	-		CCNA_01082	0.88	+0.6
1,186,587	-		CCNA_01082	0.89	+0.6
1,186,607	+				+2.6
1,186,629	+				-0.0