Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01064

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,166,898	+		CCNA_01062	0.64	+1.5
1,166,898	-		CCNA_01062	0.64	+0.5
1,166,934	-		CCNA_01062	0.68	-2.1
1,166,947	+		CCNA_01062	0.69	+3.2
1,166,947	+		CCNA_01062	0.69	+2.0
1,166,947	+		CCNA_01062	0.69	+1.9
1,166,947	+		CCNA_01062	0.69	+2.2
1,166,955	-		CCNA_01062	0.70	+0.2
1,166,955	-		CCNA_01062	0.70	-1.3
1,166,955	-		CCNA_01062	0.70	-0.1
1,166,955	-		CCNA_01062	0.70	+1.5
1,166,962	-		CCNA_01062	0.71	+0.2
1,166,988	-		CCNA_01062	0.73	-0.1
1,167,014	+		CCNA_01062	0.76	+2.9
1,167,019	+		CCNA_01062	0.77	+1.7
1,167,019	+		CCNA_01062	0.77	+1.6
1,167,019	+		CCNA_01062	0.77	+2.0
1,167,019	+		CCNA_01062	0.77	+2.0
1,167,019	+		CCNA_01062	0.77	+1.6
1,167,019	+		CCNA_01062	0.77	+1.9
1,167,019	+		CCNA_01062	0.77	+0.7
1,167,019	+		CCNA_01062	0.77	+1.5
1,167,019	+		CCNA_01062	0.77	+0.8
1,167,022	-		CCNA_01062	0.77	-2.1
1,167,027	-		CCNA_01062	0.77	+0.5
1,167,027	-		CCNA_01062	0.77	+2.5
1,167,027	-		CCNA_01062	0.77	+0.2
1,167,027	-		CCNA_01062	0.77	-0.5
1,167,027	-		CCNA_01062	0.77	+0.2
1,167,027	-		CCNA_01062	0.77	+2.5
1,167,027	-		CCNA_01062	0.77	-1.1
1,167,027	-		CCNA_01062	0.77	-2.0
1,167,027	-		CCNA_01062	0.77	+0.5
1,167,037	+		CCNA_01062	0.78	+1.4
1,167,039	+		CCNA_01062	0.79	+3.7
1,167,065	+		CCNA_01062	0.81	+1.6
1,167,083	-		CCNA_01062	0.83	-2.3
1,167,151	+				+2.7
1,167,151	+				+2.5
1,167,157	+				+2.1
1,167,157	+				+2.5
1,167,159	-				-0.5
1,167,299	+				+3.1
1,167,308	-				+1.5
1,167,308	-				+2.2
1,167,310	+				+3.7
1,167,382	+		CCNA_01063	0.21	+3.7
1,167,382	+		CCNA_01063	0.21	+3.8
1,167,382	+		CCNA_01063	0.21	+3.9
1,167,382	+		CCNA_01063	0.21	+3.8
1,167,382	+		CCNA_01063	0.21	+3.9
1,167,382	+		CCNA_01063	0.21	+4.8
1,167,390	-		CCNA_01063	0.22	+1.1
1,167,390	-		CCNA_01063	0.22	+0.5
1,167,390	-		CCNA_01063	0.22	+3.5
1,167,390	-		CCNA_01063	0.22	-0.1
1,167,390	-		CCNA_01063	0.22	-1.9
1,167,390	-		CCNA_01063	0.22	+0.6
1,167,390	-		CCNA_01063	0.22	-2.2
1,167,392	+		CCNA_01063	0.22	+3.6
1,167,400	-		CCNA_01063	0.24	-0.1
1,167,442	-		CCNA_01063	0.30	+4.6
1,167,442	-		CCNA_01063	0.30	+4.0
1,167,444	+		CCNA_01063	0.30	+3.7
1,167,444	+		CCNA_01063	0.30	+3.8
1,167,525	+		CCNA_01063	0.43	+4.2
1,167,533	-		CCNA_01063	0.44	+0.0
1,167,533	-		CCNA_01063	0.44	+2.1
1,167,533	-		CCNA_01063	0.44	+1.7
1,167,535	+		CCNA_01063	0.44	+2.7
1,167,543	-		CCNA_01063	0.46	-0.3
1,167,563	+		CCNA_01063	0.49	+3.3
1,167,571	-		CCNA_01063	0.50	+1.6
1,167,576	-		CCNA_01063	0.51	-0.6
1,167,576	-		CCNA_01063	0.51	-0.8
1,167,576	-		CCNA_01063	0.51	-1.2
1,167,589	+		CCNA_01063	0.53	+4.6
1,167,594	+		CCNA_01063	0.54	+4.0
1,167,621	-		CCNA_01063	0.58	-0.9
1,167,642	+		CCNA_01063	0.61	+4.1
1,167,656	-		CCNA_01063	0.63	-0.6
1,167,658	+		CCNA_01063	0.63	+3.7
1,167,666	-		CCNA_01063	0.65	+0.9
1,167,712	+		CCNA_01063	0.72	+4.1
1,167,712	+		CCNA_01063	0.72	+3.8
1,167,712	+		CCNA_01063	0.72	+3.6
1,167,720	-		CCNA_01063	0.73	+0.0
1,167,733	+		CCNA_01063	0.75	+3.7
1,167,765	-		CCNA_01063	0.80	-2.2
1,167,768	+		CCNA_01063	0.80	+3.9
1,167,776	-		CCNA_01063	0.82	+0.1
1,167,873	+				+2.1
1,167,873	+				+1.0
1,167,873	+				+1.4
1,167,873	+				+2.5
1,167,875	-				+0.9
1,167,881	-				-0.5
1,167,881	-				-1.2
1,167,881	-				+0.9
1,167,881	-				-1.8
1,167,942	+				+2.0
1,167,960	-				+0.2
1,167,975	+				+1.4
1,167,982	-				-1.6
1,167,990	+				+1.1
1,168,026	+		CCNA_01064	0.12	+0.5
1,168,075	-		CCNA_01064	0.16	+0.9
1,168,077	+		CCNA_01064	0.17	+0.8
1,168,078	+		CCNA_01064	0.17	+2.0
1,168,078	+		CCNA_01064	0.17	+1.3
1,168,078	+		CCNA_01064	0.17	+2.9
1,168,194	-		CCNA_01064	0.27	-0.8
1,168,216	+		CCNA_01064	0.29	+0.3
1,168,216	+		CCNA_01064	0.29	+0.9
1,168,224	-		CCNA_01064	0.30	+0.9
1,168,224	-		CCNA_01064	0.30	-0.5
1,168,224	-		CCNA_01064	0.30	-1.5
1,168,246	-		CCNA_01064	0.32	-1.1
1,168,246	-				+2.5
1,168,271	+		CCNA_01064	0.34	+1.9
1,168,286	+		CCNA_01064	0.35	+2.2
1,168,286	+		CCNA_01064	0.35	+1.4
1,168,294	-		CCNA_01064	0.36	+0.4
1,168,294	-		CCNA_01064	0.36	-0.5
1,168,302	-		CCNA_01064	0.37	-1.5
1,168,327	-		CCNA_01064	0.39	-0.6
1,168,336	+		CCNA_01064	0.40	+0.7
1,168,336	+		CCNA_01064	0.40	+1.4
1,168,336	+		CCNA_01064	0.40	+0.3
1,168,336	+		CCNA_01064	0.40	+0.3
1,168,336	+		CCNA_01064	0.40	+2.1
1,168,336	+		CCNA_01064	0.40	+2.5
1,168,336	+		CCNA_01064	0.40	+1.6
1,168,336	+		CCNA_01064	0.40	+0.8
1,168,336	+		CCNA_01064	0.40	+0.2
1,168,336	+		CCNA_01064	0.40	-0.3
1,168,344	-		CCNA_01064	0.41	-2.6
1,168,344	-		CCNA_01064	0.41	+0.7
1,168,344	-		CCNA_01064	0.41	+0.9
1,168,344	-		CCNA_01064	0.41	-1.5
1,168,344	-		CCNA_01064	0.41	-1.1
1,168,365	+		CCNA_01064	0.42	+1.2
1,168,529	+		CCNA_01064	0.57	+0.8
1,168,536	+		CCNA_01064	0.58	+3.3
1,168,536	+		CCNA_01064	0.58	+1.5
1,168,637	+		CCNA_01064	0.67	+1.7
1,168,638	+		CCNA_01064	0.67	+0.9
1,168,640	+		CCNA_01064	0.67	+5.4
1,168,659	+		CCNA_01064	0.69	+1.6
1,168,659	+				+4.9
1,168,667	-		CCNA_01064	0.70	-0.3
1,168,720	-		CCNA_01064	0.74	-0.3
1,168,722	+		CCNA_01064	0.74	+2.2
1,168,748	+		CCNA_01064	0.77	+2.1
1,168,756	+		CCNA_01064	0.78	+1.7
1,168,756	+		CCNA_01064	0.78	+1.7
1,168,756	-		CCNA_01064	0.78	-1.2
1,168,794	-		CCNA_01064	0.81	-0.8
1,168,824	-		CCNA_01064	0.84	-0.3
1,168,851	+		CCNA_01064	0.86	+1.7
1,168,947	+				+1.5
1,168,947	+				+1.8
1,168,952	+				+0.7
1,168,955	-				-0.3
1,168,962	+				+1.1
1,168,988	+				+2.5
1,168,994	+				+2.2
1,168,995	+				+1.1
1,169,000	+				+0.3
1,169,000	+				+0.6
1,169,008	-				+0.9
1,169,019	+				+2.0
1,169,019	+				+0.8
1,169,019	+				+2.1
1,169,019	+				+1.8
1,169,019	+				+1.9
1,169,027	+				+1.9
1,169,027	+				+1.6
1,169,027	+				+1.8
1,169,035	-				-1.6
1,169,035	-				+4.1
1,169,040	-				+1.9
1,169,077	+				+2.0
1,169,077	+				+1.4
1,169,078	-				-1.4
1,169,120	+		CCNA_01065	0.11	+1.4
1,169,120	+		CCNA_01065	0.11	+1.5
1,169,193	+		CCNA_01065	0.18	+1.7
1,169,213	+		CCNA_01065	0.20	+0.4
1,169,238	+		CCNA_01065	0.22	+2.3
1,169,238	+		CCNA_01065	0.22	+1.9
1,169,252	+		CCNA_01065	0.23	+4.1
1,169,267	-		CCNA_01065	0.25	-1.4
1,169,279	+		CCNA_01065	0.26	+2.6
1,169,279	+		CCNA_01065	0.26	+1.2
1,169,303	-		CCNA_01065	0.28	-0.3
1,169,318	-		CCNA_01065	0.30	-0.9
1,169,347	-		CCNA_01065	0.32	-3.0
1,169,347	-		CCNA_01065	0.32	+0.2
1,169,370	+		CCNA_01065	0.35	+1.7
1,169,552	+		CCNA_01065	0.52	+1.4
1,169,567	-		CCNA_01065	0.54	+0.8
1,169,573	+		CCNA_01065	0.54	+2.2
1,169,581	-		CCNA_01065	0.55	-2.4
1,169,602	+		CCNA_01065	0.57	+1.9
1,169,602	+		CCNA_01065	0.57	+2.2
1,169,604	+		CCNA_01065	0.57	+2.0
1,169,610	-		CCNA_01065	0.58	-0.6
1,169,640	+		CCNA_01065	0.61	+2.9
1,169,640	+		CCNA_01065	0.61	+1.6
1,169,657	+		CCNA_01065	0.62	+0.7
1,169,658	+		CCNA_01065	0.62	+2.6
1,169,665	-		CCNA_01065	0.63	+0.2
1,169,674	+		CCNA_01065	0.64	+1.8
1,169,701	-		CCNA_01065	0.67	-1.3
1,169,751	+		CCNA_01065	0.71	+2.4
1,169,759	-		CCNA_01065	0.72	-2.1
1,169,779	-		CCNA_01065	0.74	-0.8
1,169,786	-		CCNA_01065	0.75	-0.3
1,169,788	+		CCNA_01065	0.75	+2.7
1,169,802	+		CCNA_01065	0.76	+2.9
1,169,820	-		CCNA_01065	0.78	-0.3
1,169,870	+		CCNA_01065	0.83	+0.5
1,169,870	+		CCNA_01065	0.83	+2.1
1,169,878	-		CCNA_01065	0.84	-0.1
1,169,878	-		CCNA_01065	0.84	-1.4
1,169,889	+		CCNA_01065	0.85	+1.9
1,169,889	+		CCNA_01065	0.85	+1.1
1,169,889	+		CCNA_01065	0.85	+0.9
1,169,897	-		CCNA_01065	0.85	-0.1
1,169,897	-		CCNA_01065	0.85	-0.6
1,169,897	-		CCNA_01065	0.85	-2.1
1,169,902	+		CCNA_01065	0.86	+1.7
1,169,902	+		CCNA_01065	0.86	+2.6
1,169,921	+		CCNA_01065	0.88	+1.4