Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00949

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Polymyxin B sulfate 0.005 mg/ml
1,025,830	+		CCNA_00947	0.75	+3.0
1,025,851	+		CCNA_00947	0.76	+2.6
1,025,852	+		CCNA_00947	0.76	+2.4
1,025,852	+		CCNA_00947	0.76	+2.4
1,025,862	+		CCNA_00947	0.77	+2.3
1,025,862	+		CCNA_00947	0.77	+2.1
1,025,870	+		CCNA_00947	0.77	+2.5
1,025,908	+		CCNA_00947	0.80	+3.0
1,025,925	-		CCNA_00947	0.81	-3.0
1,025,952	+		CCNA_00947	0.82	+2.6
1,025,952	+		CCNA_00947	0.82	+2.5
1,025,952	+		CCNA_00947	0.82	+2.5
1,026,019	+		CCNA_00947	0.86	+3.0
1,026,027	-		CCNA_00947	0.86	+0.4
1,026,028	+		CCNA_00947	0.86	+3.2
1,026,028	+		CCNA_00947	0.86	+3.0
1,026,028	+		CCNA_00947	0.86	+3.1
1,026,028	+		CCNA_00947	0.86	+3.4
1,026,036	-		CCNA_00947	0.87	+0.4
1,026,046	-		CCNA_00947	0.87	+1.4
1,026,067	+		CCNA_00947	0.89	+2.5
1,026,067	+		CCNA_00947	0.89	+3.1
1,026,070	-		CCNA_00947	0.89	+0.4
1,026,072	+		CCNA_00947	0.89	+2.7
1,026,080	+		CCNA_00947	0.89	+2.5
1,026,149	+				+3.0
1,026,149	+				+2.9
1,026,157	-				+0.4
1,026,170	+				+2.8
1,026,180	+				+2.5
1,026,180	+				+3.1
1,026,180	+				+2.9
1,026,182	+				+3.1
1,026,182	+				+3.0
1,026,182	+				+2.8
1,026,188	-				+1.7
1,026,190	-				-0.3
1,026,190	-				-0.3
1,026,334	-				-0.5
1,026,401	+				+1.2
1,026,429	+				-0.2
1,026,462	+				+1.1
1,026,487	+		CCNA_00948	0.17	+0.4
1,026,540	+		CCNA_00948	0.36	+0.4
1,026,594	+		CCNA_00948	0.55	+0.4
1,026,706	+				+2.5
1,026,711	+				+3.4
1,026,714	+				+3.5
1,026,724	+				+4.0
1,026,724	+				+3.8
1,026,729	-				+0.4
1,026,732	-				-0.3
1,026,733	+				+3.7
1,026,741	-				-0.8
1,026,798	-		CCNA_00949	0.25	+0.1
1,026,897	-		CCNA_00949	0.69	+0.7
1,026,899	+		CCNA_00949	0.70	+2.7
1,026,917	+		CCNA_00949	0.78	+0.3
1,026,967	-				+0.1
1,026,970	+				+0.1
1,026,970	+				-0.5
1,026,972	+				+0.6
1,026,972	+				+2.9
1,026,972	+				+1.6
1,026,972	+				+2.0
1,026,972	+				+1.9
1,026,972	+				+2.5
1,026,980	-				-1.4
1,026,980	-				-1.6
1,027,013	+				+1.8
1,027,071	+				+2.5
1,027,071	+				+2.9
1,027,105	+				+3.5
1,027,115	+				+3.1
1,027,115	+				+2.1
1,027,115	+				-1.0
1,027,120	+				+1.0
1,027,144	+				+2.1
1,027,152	-		CCNA_00950	0.10	+0.7
1,027,190	+		CCNA_00950	0.12	+2.3
1,027,213	+		CCNA_00950	0.14	+3.1
1,027,213	+		CCNA_00950	0.14	+3.3
1,027,213	+		CCNA_00950	0.14	+2.4
1,027,221	-		CCNA_00950	0.14	+0.4
1,027,271	+		CCNA_00950	0.17	+3.0
1,027,276	+		CCNA_00950	0.18	+3.3
1,027,360	+		CCNA_00950	0.23	+3.2
1,027,388	+		CCNA_00950	0.24	+2.3
1,027,436	+		CCNA_00950	0.27	+3.2
1,027,436	+		CCNA_00950	0.27	+2.4
1,027,441	+		CCNA_00950	0.27	+3.3
1,027,444	-		CCNA_00950	0.28	+1.1
1,027,444	-		CCNA_00950	0.28	+0.7
1,027,462	+		CCNA_00950	0.29	+3.3
1,027,568	+		CCNA_00950	0.35	+1.0
1,027,568	-		CCNA_00950	0.35	-1.5
1,027,606	+		CCNA_00950	0.37	+2.1
1,027,606	+		CCNA_00950	0.37	+3.1
1,027,653	+		CCNA_00950	0.40	+2.2
1,027,653	+		CCNA_00950	0.40	+2.5
1,027,653	+		CCNA_00950	0.40	+3.1
1,027,656	-		CCNA_00950	0.40	+0.4
1,027,682	-		CCNA_00950	0.42	+0.7
1,027,748	+		CCNA_00950	0.46	+1.4
1,027,764	+		CCNA_00950	0.47	+0.8
1,027,764	+		CCNA_00950	0.47	+1.0
1,027,764	+		CCNA_00950	0.47	+1.5
1,027,764	+		CCNA_00950	0.47	+2.0
1,027,829	+		CCNA_00950	0.51	+3.3
1,027,834	+		CCNA_00950	0.51	+3.6
1,027,924	+		CCNA_00950	0.56	+3.1
1,027,950	+		CCNA_00950	0.58	+2.2
1,027,950	+		CCNA_00950	0.58	+2.6
1,027,950	+		CCNA_00950	0.58	+3.2
1,027,950	+		CCNA_00950	0.58	+3.0
1,027,950	+		CCNA_00950	0.58	+2.2
1,027,950	+		CCNA_00950	0.58	+2.8
1,027,950	+		CCNA_00950	0.58	+3.4
1,027,950	+		CCNA_00950	0.58	+2.9
1,027,955	+		CCNA_00950	0.58	+2.0
1,027,958	-		CCNA_00950	0.58	+0.4
1,027,958	-		CCNA_00950	0.58	+1.7
1,027,958	-		CCNA_00950	0.58	+1.7