Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00921

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00920 and CCNA_00921 are separated by 167 nucleotidesCCNA_00921 and CCNA_00922 are separated by 98 nucleotides CCNA_00920: CCNA_00920 - hypothetical protein, at 996,464 to 997,576 _00920 CCNA_00921: CCNA_00921 - zinc metalloprotease, at 997,744 to 998,499 _00921 CCNA_00922: CCNA_00922 - ClpB protein, at 998,598 to 1,001,177 _00922 Position (kb) 997 998 999Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 996.760 kb on + strand, within CCNA_00920at 996.760 kb on + strand, within CCNA_00920at 996.808 kb on + strand, within CCNA_00920at 997.013 kb on - strand, within CCNA_00920at 997.146 kb on + strand, within CCNA_00920at 997.195 kb on + strand, within CCNA_00920at 997.211 kb on - strand, within CCNA_00920at 997.489 kb on + strandat 997.489 kb on + strandat 997.499 kb on - strandat 997.524 kb on + strandat 997.524 kb on + strandat 997.570 kb on + strandat 997.573 kb on - strandat 997.645 kb on + strandat 997.650 kb on + strandat 997.653 kb on - strandat 997.667 kb on - strandat 997.669 kb on + strandat 997.677 kb on - strandat 997.715 kb on - strandat 997.740 kb on + strandat 997.740 kb on + strandat 997.740 kb on + strandat 997.748 kb on - strandat 997.749 kb on - strandat 997.755 kb on - strandat 997.795 kb on - strandat 997.881 kb on + strand, within CCNA_00921at 997.881 kb on + strand, within CCNA_00921at 997.887 kb on + strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.914 kb on - strand, within CCNA_00921at 997.921 kb on - strand, within CCNA_00921at 997.921 kb on - strand, within CCNA_00921at 997.924 kb on - strand, within CCNA_00921at 997.941 kb on + strand, within CCNA_00921at 997.949 kb on + strand, within CCNA_00921at 997.949 kb on - strand, within CCNA_00921at 997.949 kb on - strand, within CCNA_00921at 997.949 kb on - strand, within CCNA_00921at 997.986 kb on - strand, within CCNA_00921at 998.000 kb on - strand, within CCNA_00921at 998.103 kb on + strand, within CCNA_00921at 998.132 kb on + strand, within CCNA_00921at 998.140 kb on - strand, within CCNA_00921at 998.140 kb on - strand, within CCNA_00921at 998.188 kb on - strand, within CCNA_00921at 998.191 kb on + strand, within CCNA_00921at 998.202 kb on + strand, within CCNA_00921at 998.246 kb on - strand, within CCNA_00921at 998.247 kb on - strand, within CCNA_00921at 998.264 kb on + strand, within CCNA_00921at 998.270 kb on + strand, within CCNA_00921at 998.270 kb on + strand, within CCNA_00921at 998.330 kb on - strand, within CCNA_00921at 998.395 kb on + strand, within CCNA_00921at 998.395 kb on + strand, within CCNA_00921at 998.396 kb on + strand, within CCNA_00921at 998.400 kb on + strand, within CCNA_00921at 998.406 kb on + strand, within CCNA_00921at 998.434 kb on + strandat 998.495 kb on + strandat 998.498 kb on - strandat 998.550 kb on + strandat 998.556 kb on + strandat 998.556 kb on + strandat 998.556 kb on + strandat 998.559 kb on - strandat 998.561 kb on + strandat 998.564 kb on - strandat 998.564 kb on - strandat 998.564 kb on - strandat 998.612 kb on + strandat 998.612 kb on + strandat 998.646 kb on + strandat 998.646 kb on + strandat 998.646 kb on + strandat 998.646 kb on + strandat 998.646 kb on + strandat 998.646 kb on + strandat 998.646 kb on + strandat 998.654 kb on - strandat 998.654 kb on - strandat 998.654 kb on - strandat 998.663 kb on + strandat 998.663 kb on + strandat 998.681 kb on - strandat 998.694 kb on + strandat 998.706 kb on + strandat 998.748 kb on - strandat 998.748 kb on - strandat 998.764 kb on + strandat 998.764 kb on + strandat 998.787 kb on + strandat 998.787 kb on + strandat 998.795 kb on - strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.801 kb on + strandat 998.811 kb on - strandat 998.814 kb on + strandat 998.837 kb on + strandat 998.849 kb on + strandat 998.857 kb on - strand, within CCNA_00922at 998.917 kb on + strand, within CCNA_00922at 998.980 kb on - strand, within CCNA_00922at 998.989 kb on + strand, within CCNA_00922at 998.994 kb on + strand, within CCNA_00922at 999.002 kb on - strand, within CCNA_00922at 999.066 kb on + strand, within CCNA_00922at 999.067 kb on + strand, within CCNA_00922at 999.075 kb on - strand, within CCNA_00922at 999.075 kb on - strand, within CCNA_00922at 999.075 kb on - strand, within CCNA_00922at 999.168 kb on + strand, within CCNA_00922at 999.176 kb on - strand, within CCNA_00922at 999.176 kb on - strand, within CCNA_00922at 999.176 kb on - strand, within CCNA_00922at 999.176 kb on - strand, within CCNA_00922at 999.194 kb on + strand, within CCNA_00922at 999.199 kb on + strand, within CCNA_00922at 999.199 kb on + strand, within CCNA_00922at 999.207 kb on - strand, within CCNA_00922at 999.225 kb on - strand, within CCNA_00922at 999.255 kb on + strand, within CCNA_00922at 999.289 kb on + strand, within CCNA_00922at 999.297 kb on - strandat 999.297 kb on - strand, within CCNA_00922at 999.297 kb on - strand, within CCNA_00922at 999.317 kb on + strand, within CCNA_00922at 999.371 kb on + strand, within CCNA_00922at 999.371 kb on + strand, within CCNA_00922at 999.371 kb on + strand, within CCNA_00922at 999.371 kb on + strand, within CCNA_00922at 999.371 kb on + strand, within CCNA_00922at 999.371 kb on + strand, within CCNA_00922at 999.379 kb on - strand, within CCNA_00922at 999.443 kb on - strand, within CCNA_00922at 999.459 kb on - strand, within CCNA_00922at 999.489 kb on - strand, within CCNA_00922at 999.491 kb on + strand, within CCNA_00922

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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996,760 + CCNA_00920 0.27 +3.2
996,760 + CCNA_00920 0.27 +2.8
996,808 + CCNA_00920 0.31 +2.5
997,013 - CCNA_00920 0.49 -0.3
997,146 + CCNA_00920 0.61 +3.4
997,195 + CCNA_00920 0.66 +3.9
997,211 - CCNA_00920 0.67 -1.8
997,489 + +3.4
997,489 + +3.4
997,499 - +0.7
997,524 + +3.0
997,524 + +3.3
997,570 + +3.5
997,573 - +0.7
997,645 + +0.4
997,650 + -0.6
997,653 - -0.9
997,667 - -0.7
997,669 + -0.6
997,677 - +0.7
997,715 - -0.8
997,740 + +0.7
997,740 + +0.6
997,740 + -1.5
997,748 - +0.1
997,749 - -0.1
997,755 - +1.1
997,795 - -0.3
997,881 + CCNA_00921 0.18 -0.4
997,881 + CCNA_00921 0.18 -3.0
997,887 + CCNA_00921 0.19 -1.5
997,889 - CCNA_00921 0.19 -1.1
997,889 - CCNA_00921 0.19 -1.1
997,889 - CCNA_00921 0.19 -2.0
997,914 - CCNA_00921 0.22 -1.1
997,921 - CCNA_00921 0.23 -0.5
997,921 - CCNA_00921 0.23 -0.3
997,924 - CCNA_00921 0.24 +1.1
997,941 + CCNA_00921 0.26 -0.0
997,949 + CCNA_00921 0.27 +0.7
997,949 - CCNA_00921 0.27 +0.5
997,949 - CCNA_00921 0.27 -1.7
997,949 - CCNA_00921 0.27 +0.1
997,986 - CCNA_00921 0.32 -0.1
998,000 - CCNA_00921 0.34 +0.7
998,103 + CCNA_00921 0.47 +0.5
998,132 + CCNA_00921 0.51 -2.1
998,140 - CCNA_00921 0.52 +2.4
998,140 - CCNA_00921 0.52 -0.8
998,188 - CCNA_00921 0.59 +0.7
998,191 + CCNA_00921 0.59 -1.9
998,202 + CCNA_00921 0.61 -0.3
998,246 - CCNA_00921 0.66 +0.4
998,247 - CCNA_00921 0.67 -1.5
998,264 + CCNA_00921 0.69 -1.4
998,270 + CCNA_00921 0.70 -1.2
998,270 + CCNA_00921 0.70 -1.4
998,330 - CCNA_00921 0.78 -0.6
998,395 + CCNA_00921 0.86 -0.9
998,395 + CCNA_00921 0.86 -2.9
998,396 + CCNA_00921 0.86 -2.6
998,400 + CCNA_00921 0.87 -0.5
998,406 + CCNA_00921 0.88 +0.5
998,434 + +0.4
998,495 + +0.9
998,498 - -0.9
998,550 + +0.1
998,556 + -0.3
998,556 + +1.5
998,556 + -0.4
998,559 - +1.7
998,561 + +2.6
998,564 - +0.4
998,564 - -0.8
998,564 - -1.1
998,612 + +2.7
998,612 + +1.6
998,646 + +0.4
998,646 + +1.4
998,646 + -0.2
998,646 + +2.1
998,646 + +2.3
998,646 + +1.4
998,646 + +0.7
998,654 - -1.3
998,654 - +0.4
998,654 - -0.6
998,663 + +2.4
998,663 + +1.8
998,681 - +1.0
998,694 + +2.3
998,706 + +2.0
998,748 - -1.0
998,748 - -0.1
998,764 + +2.1
998,764 + +2.2
998,787 + +2.5
998,787 + -1.3
998,795 - +0.7
998,801 + +1.2
998,801 + +0.5
998,801 + +0.5
998,801 + +0.8
998,801 + +0.5
998,801 + +0.7
998,801 + +1.7
998,801 + +0.3
998,811 - -0.5
998,814 + +0.9
998,837 + +1.0
998,849 + +0.5
998,857 - CCNA_00922 0.10 +1.7
998,917 + CCNA_00922 0.12 +1.3
998,980 - CCNA_00922 0.15 -0.4
998,989 + CCNA_00922 0.15 +1.6
998,994 + CCNA_00922 0.15 +1.1
999,002 - CCNA_00922 0.16 -0.1
999,066 + CCNA_00922 0.18 +0.1
999,067 + CCNA_00922 0.18 -1.1
999,075 - CCNA_00922 0.18 -1.2
999,075 - CCNA_00922 0.18 -1.6
999,075 - CCNA_00922 0.18 +0.1
999,168 + CCNA_00922 0.22 -0.9
999,176 - CCNA_00922 0.22 +0.4
999,176 - CCNA_00922 0.22 -0.6
999,176 - CCNA_00922 0.22 -0.5
999,176 - CCNA_00922 0.22 +0.3
999,194 + CCNA_00922 0.23 +0.9
999,199 + CCNA_00922 0.23 +0.8
999,199 + CCNA_00922 0.23 +1.2
999,207 - CCNA_00922 0.24 +0.1
999,225 - CCNA_00922 0.24 +2.6
999,255 + CCNA_00922 0.25 +1.6
999,289 + CCNA_00922 0.27 +1.5
999,297 - +4.3
999,297 - CCNA_00922 0.27 +2.7
999,297 - CCNA_00922 0.27 +2.9
999,317 + CCNA_00922 0.28 +1.9
999,371 + CCNA_00922 0.30 +1.3
999,371 + CCNA_00922 0.30 +0.4
999,371 + CCNA_00922 0.30 +0.1
999,371 + CCNA_00922 0.30 +1.7
999,371 + CCNA_00922 0.30 +2.1
999,371 + CCNA_00922 0.30 +2.0
999,379 - CCNA_00922 0.30 -0.3
999,443 - CCNA_00922 0.33 +0.7
999,459 - CCNA_00922 0.33 -1.2
999,489 - CCNA_00922 0.35 -1.7
999,491 + CCNA_00922 0.35 +1.5

Or see this region's nucleotide sequence