Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00859

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00858 and CCNA_00859 are separated by 132 nucleotidesCCNA_00859 and CCNA_00860 are separated by 55 nucleotidesCCNA_00860 and CCNA_00861 are separated by 123 nucleotides CCNA_00858: CCNA_00858 - TonB-dependent receptor, at 935,330 to 937,543 _00858 CCNA_00859: CCNA_00859 - acetyltransferase, GNAT family, at 937,676 to 938,563 _00859 CCNA_00860: CCNA_00860 - holdfast inhibitor protein HfiA, at 938,619 to 938,855 _00860 CCNA_00861: CCNA_00861 - hypothetical protein, at 938,979 to 939,557 _00861 Position (kb) 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 936.685 kb on - strand, within CCNA_00858at 936.692 kb on + strand, within CCNA_00858at 936.692 kb on + strand, within CCNA_00858at 936.692 kb on + strand, within CCNA_00858at 936.692 kb on + strand, within CCNA_00858at 936.697 kb on + strand, within CCNA_00858at 936.700 kb on - strand, within CCNA_00858at 936.700 kb on - strand, within CCNA_00858at 936.700 kb on - strand, within CCNA_00858at 936.707 kb on + strand, within CCNA_00858at 936.707 kb on + strand, within CCNA_00858at 936.707 kb on + strand, within CCNA_00858at 936.715 kb on - strand, within CCNA_00858at 936.715 kb on - strand, within CCNA_00858at 936.744 kb on - strand, within CCNA_00858at 936.744 kb on - strand, within CCNA_00858at 936.749 kb on - strand, within CCNA_00858at 936.794 kb on + strand, within CCNA_00858at 936.794 kb on + strand, within CCNA_00858at 936.794 kb on + strand, within CCNA_00858at 936.797 kb on - strand, within CCNA_00858at 936.832 kb on + strand, within CCNA_00858at 936.839 kb on - strand, within CCNA_00858at 936.840 kb on - strand, within CCNA_00858at 936.852 kb on + strand, within CCNA_00858at 936.860 kb on - strand, within CCNA_00858at 936.882 kb on + strand, within CCNA_00858at 936.930 kb on - strand, within CCNA_00858at 937.003 kb on + strand, within CCNA_00858at 937.004 kb on + strand, within CCNA_00858at 937.010 kb on + strand, within CCNA_00858at 937.012 kb on - strand, within CCNA_00858at 937.027 kb on + strand, within CCNA_00858at 937.035 kb on - strand, within CCNA_00858at 937.070 kb on + strand, within CCNA_00858at 937.121 kb on - strand, within CCNA_00858at 937.230 kb on + strand, within CCNA_00858at 937.246 kb on - strand, within CCNA_00858at 937.291 kb on - strand, within CCNA_00858at 937.293 kb on + strand, within CCNA_00858at 937.293 kb on + strand, within CCNA_00858at 937.293 kb on + strand, within CCNA_00858at 937.293 kb on + strand, within CCNA_00858at 937.296 kb on - strand, within CCNA_00858at 937.316 kb on + strand, within CCNA_00858at 937.317 kb on + strand, within CCNA_00858at 937.336 kb on + strandat 937.366 kb on + strandat 937.374 kb on - strandat 937.375 kb on - strandat 937.386 kb on + strandat 937.405 kb on + strandat 937.405 kb on + strandat 937.445 kb on + strandat 937.503 kb on + strandat 937.511 kb on - strandat 937.511 kb on - strandat 937.549 kb on + strandat 937.550 kb on + strandat 937.550 kb on + strandat 937.550 kb on + strandat 937.558 kb on - strandat 937.582 kb on + strandat 937.590 kb on - strandat 937.590 kb on - strandat 937.603 kb on + strandat 937.627 kb on + strandat 937.708 kb on - strandat 937.778 kb on + strand, within CCNA_00859at 937.805 kb on + strand, within CCNA_00859at 937.841 kb on - strand, within CCNA_00859at 937.842 kb on + strand, within CCNA_00859at 937.861 kb on - strand, within CCNA_00859at 937.884 kb on + strand, within CCNA_00859at 937.900 kb on - strand, within CCNA_00859at 937.935 kb on + strand, within CCNA_00859at 937.935 kb on + strand, within CCNA_00859at 937.936 kb on + strand, within CCNA_00859at 937.943 kb on - strand, within CCNA_00859at 937.969 kb on + strand, within CCNA_00859at 937.969 kb on + strand, within CCNA_00859at 937.969 kb on + strandat 938.009 kb on + strand, within CCNA_00859at 938.047 kb on + strand, within CCNA_00859at 938.053 kb on - strand, within CCNA_00859at 938.055 kb on - strand, within CCNA_00859at 938.089 kb on + strand, within CCNA_00859at 938.115 kb on + strand, within CCNA_00859at 938.123 kb on - strand, within CCNA_00859at 938.192 kb on + strand, within CCNA_00859at 938.197 kb on + strand, within CCNA_00859at 938.197 kb on + strand, within CCNA_00859at 938.200 kb on - strand, within CCNA_00859at 938.220 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.287 kb on - strand, within CCNA_00859at 938.294 kb on + strand, within CCNA_00859at 938.301 kb on + strand, within CCNA_00859at 938.301 kb on - strand, within CCNA_00859at 938.309 kb on - strand, within CCNA_00859at 938.311 kb on + strand, within CCNA_00859at 938.330 kb on + strand, within CCNA_00859at 938.330 kb on + strand, within CCNA_00859at 938.340 kb on + strand, within CCNA_00859at 938.345 kb on - strand, within CCNA_00859at 938.348 kb on - strand, within CCNA_00859at 938.348 kb on - strand, within CCNA_00859at 938.355 kb on - strand, within CCNA_00859at 938.377 kb on - strand, within CCNA_00859at 938.402 kb on + strand, within CCNA_00859at 938.404 kb on + strand, within CCNA_00859at 938.410 kb on - strand, within CCNA_00859at 938.416 kb on - strand, within CCNA_00859at 938.427 kb on + strand, within CCNA_00859at 938.428 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.451 kb on + strand, within CCNA_00859at 938.507 kb on - strandat 938.508 kb on - strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.569 kb on - strandat 938.615 kb on + strandat 938.623 kb on - strandat 938.696 kb on - strand, within CCNA_00860at 938.712 kb on + strand, within CCNA_00860at 938.738 kb on + strand, within CCNA_00860at 938.752 kb on - strand, within CCNA_00860at 938.757 kb on - strand, within CCNA_00860at 938.848 kb on + strandat 938.928 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.956 kb on - strandat 938.958 kb on + strandat 938.984 kb on - strandat 938.984 kb on - strandat 938.993 kb on - strandat 938.996 kb on + strandat 939.006 kb on + strandat 939.006 kb on + strandat 939.032 kb on - strandat 939.075 kb on + strand, within CCNA_00861at 939.083 kb on - strand, within CCNA_00861at 939.110 kb on + strand, within CCNA_00861at 939.118 kb on - strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.171 kb on + strand, within CCNA_00861at 939.171 kb on + strandat 939.204 kb on + strand, within CCNA_00861at 939.212 kb on - strand, within CCNA_00861at 939.240 kb on + strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.282 kb on + strand, within CCNA_00861at 939.309 kb on - strand, within CCNA_00861at 939.323 kb on - strand, within CCNA_00861at 939.374 kb on + strand, within CCNA_00861at 939.396 kb on + strand, within CCNA_00861at 939.463 kb on + strand, within CCNA_00861at 939.465 kb on + strand, within CCNA_00861at 939.496 kb on - strand, within CCNA_00861at 939.509 kb on + strandat 939.509 kb on + strandat 939.517 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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936,685 - CCNA_00858 0.61 +2.6
936,692 + CCNA_00858 0.62 +1.6
936,692 + CCNA_00858 0.62 +1.9
936,692 + CCNA_00858 0.62 +2.1
936,692 + CCNA_00858 0.62 +1.8
936,697 + CCNA_00858 0.62 +1.9
936,700 - CCNA_00858 0.62 -1.8
936,700 - CCNA_00858 0.62 -1.2
936,700 - CCNA_00858 0.62 -1.1
936,707 + CCNA_00858 0.62 +1.7
936,707 + CCNA_00858 0.62 +0.6
936,707 + CCNA_00858 0.62 +1.1
936,715 - CCNA_00858 0.63 +0.3
936,715 - CCNA_00858 0.63 +1.1
936,744 - CCNA_00858 0.64 +0.5
936,744 - CCNA_00858 0.64 -0.7
936,749 - CCNA_00858 0.64 -0.2
936,794 + CCNA_00858 0.66 +0.6
936,794 + CCNA_00858 0.66 +1.1
936,794 + CCNA_00858 0.66 +0.6
936,797 - CCNA_00858 0.66 +0.1
936,832 + CCNA_00858 0.68 +3.0
936,839 - CCNA_00858 0.68 +1.2
936,840 - CCNA_00858 0.68 +0.3
936,852 + CCNA_00858 0.69 +1.1
936,860 - CCNA_00858 0.69 -1.4
936,882 + CCNA_00858 0.70 +1.3
936,930 - CCNA_00858 0.72 +2.6
937,003 + CCNA_00858 0.76 +0.9
937,004 + CCNA_00858 0.76 -0.7
937,010 + CCNA_00858 0.76 +2.4
937,012 - CCNA_00858 0.76 +1.1
937,027 + CCNA_00858 0.77 +1.1
937,035 - CCNA_00858 0.77 -2.9
937,070 + CCNA_00858 0.79 +3.5
937,121 - CCNA_00858 0.81 -1.6
937,230 + CCNA_00858 0.86 +1.9
937,246 - CCNA_00858 0.87 -0.4
937,291 - CCNA_00858 0.89 -1.4
937,293 + CCNA_00858 0.89 +2.8
937,293 + CCNA_00858 0.89 +2.2
937,293 + CCNA_00858 0.89 +1.0
937,293 + CCNA_00858 0.89 +2.8
937,296 - CCNA_00858 0.89 +0.1
937,316 + CCNA_00858 0.90 +1.9
937,317 + CCNA_00858 0.90 +2.3
937,336 + +3.0
937,366 + +2.8
937,374 - +2.1
937,375 - -1.4
937,386 + +2.8
937,405 + +3.2
937,405 + +3.2
937,445 + +3.4
937,503 + +2.8
937,511 - -1.5
937,511 - -2.1
937,549 + +2.9
937,550 + +2.9
937,550 + +3.1
937,550 + +2.9
937,558 - +0.7
937,582 + +2.9
937,590 - +0.5
937,590 - +0.7
937,603 + +2.5
937,627 + +3.0
937,708 - +2.4
937,778 + CCNA_00859 0.11 -1.7
937,805 + CCNA_00859 0.15 +1.7
937,841 - CCNA_00859 0.19 +0.5
937,842 + CCNA_00859 0.19 +2.0
937,861 - CCNA_00859 0.21 -0.5
937,884 + CCNA_00859 0.23 +0.1
937,900 - CCNA_00859 0.25 -1.1
937,935 + CCNA_00859 0.29 -0.3
937,935 + CCNA_00859 0.29 +0.9
937,936 + CCNA_00859 0.29 +1.4
937,943 - CCNA_00859 0.30 +0.3
937,969 + CCNA_00859 0.33 +0.3
937,969 + CCNA_00859 0.33 -0.1
937,969 + +1.7
938,009 + CCNA_00859 0.38 +0.3
938,047 + CCNA_00859 0.42 +2.7
938,053 - CCNA_00859 0.42 -1.1
938,055 - CCNA_00859 0.43 -0.3
938,089 + CCNA_00859 0.47 -2.4
938,115 + CCNA_00859 0.49 -1.3
938,123 - CCNA_00859 0.50 +0.5
938,192 + CCNA_00859 0.58 +0.3
938,197 + CCNA_00859 0.59 -2.8
938,197 + CCNA_00859 0.59 -0.6
938,200 - CCNA_00859 0.59 -0.5
938,220 + CCNA_00859 0.61 -0.3
938,264 + CCNA_00859 0.66 +0.3
938,264 + CCNA_00859 0.66 -1.1
938,264 + CCNA_00859 0.66 -0.7
938,264 + CCNA_00859 0.66 +0.5
938,272 - CCNA_00859 0.67 +1.7
938,272 - CCNA_00859 0.67 +0.7
938,272 - CCNA_00859 0.67 +0.2
938,287 - CCNA_00859 0.69 +1.9
938,294 + CCNA_00859 0.70 -0.5
938,301 + CCNA_00859 0.70 -1.3
938,301 - CCNA_00859 0.70 +1.7
938,309 - CCNA_00859 0.71 +0.3
938,311 + CCNA_00859 0.72 -2.2
938,330 + CCNA_00859 0.74 -0.7
938,330 + CCNA_00859 0.74 +0.1
938,340 + CCNA_00859 0.75 -2.3
938,345 - CCNA_00859 0.75 +0.5
938,348 - CCNA_00859 0.76 +1.7
938,348 - CCNA_00859 0.76 -0.1
938,355 - CCNA_00859 0.76 -2.3
938,377 - CCNA_00859 0.79 +0.3
938,402 + CCNA_00859 0.82 +0.1
938,404 + CCNA_00859 0.82 -0.3
938,410 - CCNA_00859 0.83 +2.7
938,416 - CCNA_00859 0.83 +0.1
938,427 + CCNA_00859 0.85 -2.9
938,428 - CCNA_00859 0.85 +0.3
938,435 - CCNA_00859 0.85 -0.7
938,435 - CCNA_00859 0.85 +1.5
938,435 - CCNA_00859 0.85 -0.1
938,435 - CCNA_00859 0.85 -1.0
938,451 + CCNA_00859 0.87 -1.5
938,507 - -0.9
938,508 - +1.8
938,524 + +1.7
938,524 + +0.3
938,524 + +0.1
938,524 + -2.1
938,524 + +0.7
938,532 - +1.1
938,532 - +1.1
938,532 - +0.8
938,532 - +1.9
938,569 - +1.2
938,615 + +1.7
938,623 - +0.4
938,696 - CCNA_00860 0.32 +1.2
938,712 + CCNA_00860 0.39 -0.9
938,738 + CCNA_00860 0.50 +1.7
938,752 - CCNA_00860 0.56 +0.5
938,757 - CCNA_00860 0.58 -0.3
938,848 + +0.3
938,928 + +1.5
938,948 + -1.1
938,948 + -1.0
938,956 - +1.1
938,958 + +1.3
938,984 - -0.3
938,984 - -1.3
938,993 - +1.1
938,996 + +1.1
939,006 + -2.4
939,006 + +0.9
939,032 - -0.1
939,075 + CCNA_00861 0.17 -0.4
939,083 - CCNA_00861 0.18 -1.1
939,110 + CCNA_00861 0.23 -0.3
939,118 - CCNA_00861 0.24 +0.7
939,124 + CCNA_00861 0.25 -2.0
939,124 + CCNA_00861 0.25 +1.1
939,124 + CCNA_00861 0.25 +0.5
939,124 + CCNA_00861 0.25 +0.7
939,132 - CCNA_00861 0.26 -2.8
939,132 - CCNA_00861 0.26 +1.3
939,132 - CCNA_00861 0.26 +1.2
939,171 + CCNA_00861 0.33 -0.5
939,171 + +0.7
939,204 + CCNA_00861 0.39 -0.7
939,212 - CCNA_00861 0.40 +1.7
939,240 + CCNA_00861 0.45 -0.5
939,248 - CCNA_00861 0.46 -0.8
939,248 - CCNA_00861 0.46 -0.4
939,248 - CCNA_00861 0.46 -2.3
939,248 - CCNA_00861 0.46 +3.2
939,282 + CCNA_00861 0.52 +0.1
939,309 - CCNA_00861 0.57 -0.1
939,323 - CCNA_00861 0.59 -0.1
939,374 + CCNA_00861 0.68 -1.5
939,396 + CCNA_00861 0.72 -0.8
939,463 + CCNA_00861 0.84 -1.7
939,465 + CCNA_00861 0.84 +0.7
939,496 - CCNA_00861 0.89 -0.4
939,509 + +3.7
939,509 + -1.1
939,517 - -0.3

Or see this region's nucleotide sequence