Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00847

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00846 and CCNA_03943 are separated by 84 nucleotidesCCNA_03943 and CCNA_00847 are separated by 199 nucleotidesCCNA_00847 and CCNA_00848 are separated by 26 nucleotidesCCNA_00848 and CCNA_00849 are separated by 236 nucleotides CCNA_00846: CCNA_00846 - proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, at 917,301 to 920,390 _00846 CCNA_03943: CCNA_03943 - hypothetical protein, at 920,475 to 920,636 _03943 CCNA_00847: CCNA_00847 - leucine-responsive regulatory protein, at 920,836 to 921,303 _00847 CCNA_00848: CCNA_00848 - leucine-responsive regulatory protein, at 921,330 to 921,494 _00848 CCNA_00849: CCNA_00849 - outer membrane efflux protein, at 921,731 to 923,134 _00849 Position (kb) 920 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 919.872 kb on + strand, within CCNA_00846at 919.892 kb on - strand, within CCNA_00846at 919.941 kb on - strand, within CCNA_00846at 919.988 kb on - strand, within CCNA_00846at 919.992 kb on + strand, within CCNA_00846at 920.029 kb on - strand, within CCNA_00846at 920.166 kb on + strandat 920.174 kb on - strandat 920.174 kb on - strandat 920.203 kb on - strandat 920.297 kb on + strandat 920.299 kb on + strandat 920.305 kb on - strandat 920.320 kb on - strandat 920.325 kb on - strandat 920.345 kb on - strandat 920.364 kb on + strandat 920.366 kb on + strandat 920.475 kb on - strandat 920.582 kb on - strand, within CCNA_03943at 920.631 kb on + strandat 920.631 kb on - strandat 920.685 kb on - strandat 920.769 kb on - strandat 920.769 kb on - strandat 920.774 kb on - strandat 920.874 kb on + strandat 920.874 kb on + strandat 920.882 kb on - strandat 920.927 kb on + strand, within CCNA_00847at 920.951 kb on + strand, within CCNA_00847at 920.958 kb on - strand, within CCNA_00847at 920.965 kb on - strand, within CCNA_00847at 920.969 kb on - strand, within CCNA_00847at 920.991 kb on - strand, within CCNA_00847at 921.018 kb on + strand, within CCNA_00847at 921.031 kb on - strand, within CCNA_00847at 921.045 kb on - strand, within CCNA_00847at 921.045 kb on - strand, within CCNA_00847at 921.055 kb on - strandat 921.093 kb on + strand, within CCNA_00847at 921.093 kb on + strand, within CCNA_00847at 921.101 kb on - strand, within CCNA_00847at 921.101 kb on - strand, within CCNA_00847at 921.101 kb on - strand, within CCNA_00847at 921.118 kb on + strand, within CCNA_00847at 921.124 kb on + strand, within CCNA_00847at 921.142 kb on - strand, within CCNA_00847at 921.151 kb on + strand, within CCNA_00847at 921.178 kb on - strand, within CCNA_00847at 921.194 kb on - strand, within CCNA_00847at 921.220 kb on + strand, within CCNA_00847at 921.230 kb on + strand, within CCNA_00847at 921.238 kb on - strand, within CCNA_00847at 921.252 kb on + strand, within CCNA_00847at 921.254 kb on + strand, within CCNA_00847at 921.254 kb on + strand, within CCNA_00847at 921.260 kb on - strandat 921.262 kb on - strandat 921.273 kb on + strandat 921.281 kb on - strandat 921.281 kb on - strandat 921.317 kb on + strandat 921.322 kb on + strandat 921.325 kb on - strandat 921.330 kb on - strandat 921.335 kb on - strandat 921.335 kb on - strandat 921.340 kb on - strandat 921.384 kb on - strand, within CCNA_00848at 921.394 kb on + strand, within CCNA_00848at 921.425 kb on + strand, within CCNA_00848at 921.426 kb on + strand, within CCNA_00848at 921.466 kb on - strand, within CCNA_00848at 921.570 kb on - strandat 921.570 kb on - strandat 921.576 kb on + strandat 921.666 kb on - strandat 921.734 kb on + strandat 921.735 kb on - strandat 921.759 kb on + strandat 921.759 kb on + strandat 921.759 kb on + strandat 921.759 kb on + strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.791 kb on + strandat 921.799 kb on - strandat 921.806 kb on + strandat 921.809 kb on - strandat 921.814 kb on - strandat 921.814 kb on - strandat 921.814 kb on - strandat 921.823 kb on - strandat 921.825 kb on + strandat 921.825 kb on + strandat 921.825 kb on + strandat 921.825 kb on + strandat 921.825 kb on + strandat 921.825 kb on + strandat 921.825 kb on + strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.834 kb on - strandat 921.866 kb on + strandat 921.866 kb on + strandat 921.866 kb on + strandat 921.874 kb on - strand, within CCNA_00849at 921.898 kb on + strand, within CCNA_00849at 921.906 kb on - strand, within CCNA_00849at 921.906 kb on - strand, within CCNA_00849at 921.923 kb on + strand, within CCNA_00849at 921.932 kb on + strand, within CCNA_00849at 921.980 kb on + strand, within CCNA_00849at 921.984 kb on - strand, within CCNA_00849at 922.001 kb on + strand, within CCNA_00849at 922.009 kb on - strand, within CCNA_00849at 922.032 kb on + strand, within CCNA_00849at 922.047 kb on + strand, within CCNA_00849at 922.047 kb on + strand, within CCNA_00849at 922.047 kb on + strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.103 kb on + strand, within CCNA_00849at 922.103 kb on + strand, within CCNA_00849at 922.103 kb on + strand, within CCNA_00849at 922.111 kb on - strand, within CCNA_00849at 922.111 kb on - strand, within CCNA_00849at 922.111 kb on - strand, within CCNA_00849at 922.137 kb on + strand, within CCNA_00849at 922.145 kb on - strand, within CCNA_00849at 922.147 kb on - strand, within CCNA_00849at 922.156 kb on + strand, within CCNA_00849at 922.159 kb on - strand, within CCNA_00849at 922.159 kb on - strand, within CCNA_00849at 922.164 kb on - strand, within CCNA_00849at 922.169 kb on - strand, within CCNA_00849at 922.182 kb on - strand, within CCNA_00849at 922.229 kb on - strand, within CCNA_00849at 922.299 kb on - strand, within CCNA_00849at 922.301 kb on - strand, within CCNA_00849at 922.301 kb on - strand, within CCNA_00849

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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919,872 + CCNA_00846 0.83 -0.8
919,892 - CCNA_00846 0.84 +3.5
919,941 - CCNA_00846 0.85 +4.1
919,988 - CCNA_00846 0.87 +3.8
919,992 + CCNA_00846 0.87 -1.1
920,029 - CCNA_00846 0.88 +3.3
920,166 + -0.5
920,174 - +3.0
920,174 - +3.4
920,203 - +3.4
920,297 + +0.5
920,299 + +0.3
920,305 - +3.5
920,320 - +3.6
920,325 - +2.8
920,345 - +3.5
920,364 + +0.4
920,366 + +2.4
920,475 - +0.1
920,582 - CCNA_03943 0.66 +1.5
920,631 + +0.3
920,631 - +3.4
920,685 - +4.1
920,769 - +3.8
920,769 - +3.8
920,774 - -0.5
920,874 + +1.9
920,874 + +2.4
920,882 - +1.1
920,927 + CCNA_00847 0.19 +4.6
920,951 + CCNA_00847 0.25 +2.7
920,958 - CCNA_00847 0.26 +2.6
920,965 - CCNA_00847 0.28 +1.3
920,969 - CCNA_00847 0.28 -0.5
920,991 - CCNA_00847 0.33 -1.4
921,018 + CCNA_00847 0.39 +2.5
921,031 - CCNA_00847 0.42 +1.5
921,045 - CCNA_00847 0.45 -0.7
921,045 - CCNA_00847 0.45 -1.9
921,055 - +2.6
921,093 + CCNA_00847 0.55 +3.3
921,093 + CCNA_00847 0.55 +2.3
921,101 - CCNA_00847 0.57 +0.1
921,101 - CCNA_00847 0.57 +0.8
921,101 - CCNA_00847 0.57 +0.8
921,118 + CCNA_00847 0.60 +3.5
921,124 + CCNA_00847 0.62 +2.4
921,142 - CCNA_00847 0.65 -0.7
921,151 + CCNA_00847 0.67 +1.6
921,178 - CCNA_00847 0.73 +0.6
921,194 - CCNA_00847 0.76 -1.3
921,220 + CCNA_00847 0.82 +2.7
921,230 + CCNA_00847 0.84 +3.0
921,238 - CCNA_00847 0.86 +1.4
921,252 + CCNA_00847 0.89 +2.9
921,254 + CCNA_00847 0.89 +3.5
921,254 + CCNA_00847 0.89 +2.0
921,260 - +0.4
921,262 - +4.6
921,273 + +2.3
921,281 - -0.9
921,281 - -0.1
921,317 + +2.6
921,322 + +1.6
921,325 - +1.1
921,330 - -1.7
921,335 - +1.5
921,335 - +0.2
921,340 - -0.2
921,384 - CCNA_00848 0.33 +0.5
921,394 + CCNA_00848 0.39 -0.4
921,425 + CCNA_00848 0.58 +1.1
921,426 + CCNA_00848 0.58 +0.6
921,466 - CCNA_00848 0.82 -0.4
921,570 - -0.2
921,570 - -0.4
921,576 + -0.4
921,666 - -0.1
921,734 + -1.1
921,735 - +1.0
921,759 + -0.9
921,759 + -1.0
921,759 + +2.6
921,759 + -0.9
921,767 - +0.4
921,767 - -1.4
921,767 - -0.0
921,767 - -0.5
921,791 + -1.3
921,799 - -0.5
921,806 + +0.6
921,809 - +0.4
921,814 - -1.0
921,814 - -0.6
921,814 - -0.6
921,823 - +0.4
921,825 + +1.2
921,825 + -0.2
921,825 + -0.2
921,825 + -0.4
921,825 + -1.3
921,825 + -0.5
921,825 + +0.1
921,833 - -2.7
921,833 - +1.4
921,833 - -0.9
921,833 - -1.4
921,834 - -0.5
921,866 + +0.3
921,866 + -0.8
921,866 + -1.3
921,874 - CCNA_00849 0.10 +0.1
921,898 + CCNA_00849 0.12 +0.9
921,906 - CCNA_00849 0.12 -1.6
921,906 - CCNA_00849 0.12 -1.1
921,923 + CCNA_00849 0.14 +0.9
921,932 + CCNA_00849 0.14 -1.7
921,980 + CCNA_00849 0.18 +1.1
921,984 - CCNA_00849 0.18 -1.6
922,001 + CCNA_00849 0.19 -0.8
922,009 - CCNA_00849 0.20 -1.7
922,032 + CCNA_00849 0.21 -3.5
922,047 + CCNA_00849 0.23 -0.8
922,047 + CCNA_00849 0.23 -1.1
922,047 + CCNA_00849 0.23 +0.5
922,055 - CCNA_00849 0.23 -1.4
922,055 - CCNA_00849 0.23 -2.1
922,055 - CCNA_00849 0.23 +1.2
922,055 - CCNA_00849 0.23 -0.4
922,103 + CCNA_00849 0.26 -1.4
922,103 + CCNA_00849 0.26 +1.1
922,103 + CCNA_00849 0.26 -0.2
922,111 - CCNA_00849 0.27 -0.9
922,111 - CCNA_00849 0.27 -0.4
922,111 - CCNA_00849 0.27 +0.1
922,137 + CCNA_00849 0.29 -0.7
922,145 - CCNA_00849 0.29 -2.4
922,147 - CCNA_00849 0.30 -0.4
922,156 + CCNA_00849 0.30 -2.9
922,159 - CCNA_00849 0.30 +0.4
922,159 - CCNA_00849 0.30 -1.2
922,164 - CCNA_00849 0.31 -0.1
922,169 - CCNA_00849 0.31 -0.5
922,182 - CCNA_00849 0.32 -1.3
922,229 - CCNA_00849 0.35 -1.7
922,299 - CCNA_00849 0.40 -0.8
922,301 - CCNA_00849 0.41 -2.1
922,301 - CCNA_00849 0.41 -0.8

Or see this region's nucleotide sequence