Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00809

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00806 and CCNA_00807 are separated by 7 nucleotidesCCNA_00807 and CCNA_00808 are separated by 93 nucleotidesCCNA_00808 and CCNA_00809 are separated by 279 nucleotidesCCNA_00809 and CCNA_00810 are separated by 158 nucleotides CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625 _00806 CCNA_00807: CCNA_00807 - ribonuclease P protein component, at 871,633 to 872,082 _00807 CCNA_00808: CCNA_00808 - LSU ribosomal protein L34P, at 872,176 to 872,310 _00808 CCNA_00809: CCNA_00809 - quinone oxidoreductase, at 872,590 to 873,585 _00809 CCNA_00810: CCNA_00810 - acetyl esterase, at 873,744 to 874,886 _00810 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 871.683 kb on - strand, within CCNA_00807at 871.762 kb on - strand, within CCNA_00807at 871.762 kb on - strand, within CCNA_00807at 872.398 kb on + strandat 872.417 kb on + strandat 872.424 kb on - strandat 872.424 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.435 kb on + strandat 872.435 kb on + strandat 872.443 kb on - strandat 872.473 kb on + strandat 872.478 kb on + strandat 872.502 kb on + strandat 872.526 kb on - strandat 872.567 kb on + strandat 872.614 kb on - strandat 872.614 kb on - strandat 872.618 kb on + strandat 872.619 kb on - strandat 872.619 kb on - strandat 872.624 kb on - strandat 872.626 kb on - strandat 872.637 kb on + strandat 872.644 kb on + strandat 872.659 kb on + strandat 872.673 kb on - strandat 872.673 kb on - strandat 872.675 kb on + strandat 872.675 kb on + strandat 872.675 kb on + strandat 872.683 kb on - strandat 872.798 kb on + strand, within CCNA_00809at 872.798 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.818 kb on - strand, within CCNA_00809at 872.821 kb on - strand, within CCNA_00809at 872.838 kb on + strand, within CCNA_00809at 872.838 kb on + strand, within CCNA_00809at 872.880 kb on - strand, within CCNA_00809at 872.923 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.983 kb on + strand, within CCNA_00809at 872.990 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.080 kb on + strand, within CCNA_00809at 873.082 kb on - strand, within CCNA_00809at 873.088 kb on - strand, within CCNA_00809at 873.088 kb on - strand, within CCNA_00809at 873.091 kb on + strand, within CCNA_00809at 873.093 kb on - strand, within CCNA_00809at 873.100 kb on + strand, within CCNA_00809at 873.100 kb on + strand, within CCNA_00809at 873.135 kb on - strand, within CCNA_00809at 873.138 kb on - strand, within CCNA_00809at 873.178 kb on + strand, within CCNA_00809at 873.182 kb on - strand, within CCNA_00809at 873.221 kb on + strand, within CCNA_00809at 873.257 kb on + strand, within CCNA_00809at 873.292 kb on - strand, within CCNA_00809at 873.341 kb on + strand, within CCNA_00809at 873.341 kb on + strand, within CCNA_00809at 873.343 kb on - strand, within CCNA_00809at 873.349 kb on - strand, within CCNA_00809at 873.372 kb on + strand, within CCNA_00809at 873.372 kb on + strand, within CCNA_00809at 873.380 kb on - strand, within CCNA_00809at 873.391 kb on + strand, within CCNA_00809at 873.391 kb on + strand, within CCNA_00809at 873.399 kb on - strand, within CCNA_00809at 873.401 kb on + strand, within CCNA_00809at 873.409 kb on - strand, within CCNA_00809at 873.411 kb on + strand, within CCNA_00809at 873.469 kb on + strand, within CCNA_00809at 873.469 kb on + strand, within CCNA_00809at 873.469 kb on + strand, within CCNA_00809at 873.477 kb on - strand, within CCNA_00809at 873.477 kb on - strand, within CCNA_00809at 873.498 kb on - strandat 873.499 kb on - strandat 873.516 kb on - strandat 873.527 kb on + strandat 873.532 kb on + strandat 873.532 kb on + strandat 873.580 kb on + strandat 873.639 kb on + strandat 873.647 kb on - strandat 873.652 kb on + strandat 873.684 kb on + strandat 873.699 kb on - strandat 873.703 kb on - strandat 873.705 kb on + strandat 873.825 kb on + strandat 873.825 kb on + strandat 873.833 kb on - strandat 873.848 kb on - strandat 873.904 kb on + strand, within CCNA_00810at 873.904 kb on + strand, within CCNA_00810at 873.918 kb on - strand, within CCNA_00810at 873.940 kb on - strand, within CCNA_00810at 874.043 kb on - strand, within CCNA_00810at 874.061 kb on - strand, within CCNA_00810at 874.061 kb on - strand, within CCNA_00810at 874.068 kb on + strand, within CCNA_00810at 874.116 kb on - strand, within CCNA_00810at 874.127 kb on - strand, within CCNA_00810at 874.132 kb on + strand, within CCNA_00810at 874.137 kb on - strand, within CCNA_00810at 874.145 kb on - strand, within CCNA_00810at 874.145 kb on - strand, within CCNA_00810at 874.151 kb on - strand, within CCNA_00810at 874.151 kb on - strand, within CCNA_00810at 874.161 kb on + strand, within CCNA_00810at 874.168 kb on + strand, within CCNA_00810at 874.267 kb on + strand, within CCNA_00810at 874.267 kb on + strand, within CCNA_00810at 874.269 kb on + strand, within CCNA_00810at 874.269 kb on + strand, within CCNA_00810at 874.305 kb on + strand, within CCNA_00810at 874.344 kb on + strand, within CCNA_00810at 874.359 kb on - strand, within CCNA_00810at 874.364 kb on - strand, within CCNA_00810at 874.385 kb on + strand, within CCNA_00810at 874.393 kb on - strand, within CCNA_00810at 874.397 kb on + strand, within CCNA_00810at 874.408 kb on + strand, within CCNA_00810at 874.443 kb on + strand, within CCNA_00810at 874.451 kb on - strand, within CCNA_00810at 874.462 kb on + strand, within CCNA_00810at 874.473 kb on + strand, within CCNA_00810at 874.481 kb on - strand, within CCNA_00810at 874.492 kb on - strand, within CCNA_00810at 874.532 kb on + strand, within CCNA_00810at 874.583 kb on - strand, within CCNA_00810

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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871,683 - CCNA_00807 0.11 +1.2
871,762 - CCNA_00807 0.29 +1.8
871,762 - CCNA_00807 0.29 +2.3
872,398 + -1.5
872,417 + -0.0
872,424 - -1.5
872,424 - -0.2
872,425 - +0.5
872,425 - -0.2
872,425 - -0.9
872,425 - -0.2
872,425 - +2.8
872,425 - +1.2
872,435 + +0.5
872,435 + +1.2
872,443 - +3.8
872,473 + +0.5
872,478 + +1.2
872,502 + +0.5
872,526 - +2.8
872,567 + +2.8
872,614 - +0.0
872,614 - +1.3
872,618 + +0.2
872,619 - -0.0
872,619 - -1.9
872,624 - +0.5
872,626 - -0.1
872,637 + -1.8
872,644 + -1.3
872,659 + +0.5
872,673 - -1.3
872,673 - -1.6
872,675 + -0.5
872,675 + -1.2
872,675 + +1.8
872,683 - -0.5
872,798 + CCNA_00809 0.21 +1.0
872,798 - CCNA_00809 0.21 -0.3
872,806 - CCNA_00809 0.22 -0.8
872,806 - CCNA_00809 0.22 +2.1
872,806 - CCNA_00809 0.22 +0.4
872,806 - CCNA_00809 0.22 +0.6
872,806 - CCNA_00809 0.22 -1.6
872,818 - CCNA_00809 0.23 -0.4
872,821 - CCNA_00809 0.23 +0.8
872,838 + CCNA_00809 0.25 +0.5
872,838 + CCNA_00809 0.25 +0.2
872,880 - CCNA_00809 0.29 +0.8
872,923 + CCNA_00809 0.33 -0.1
872,960 + CCNA_00809 0.37 -0.9
872,960 + CCNA_00809 0.37 -0.9
872,960 + CCNA_00809 0.37 +0.5
872,960 + CCNA_00809 0.37 +1.2
872,960 + CCNA_00809 0.37 -0.2
872,968 - CCNA_00809 0.38 +0.2
872,968 - CCNA_00809 0.38 +0.1
872,968 - CCNA_00809 0.38 -2.3
872,968 - CCNA_00809 0.38 -0.8
872,983 + CCNA_00809 0.39 -0.0
872,990 + CCNA_00809 0.40 -0.0
873,020 + CCNA_00809 0.43 +0.5
873,020 + CCNA_00809 0.43 -0.9
873,020 + CCNA_00809 0.43 -0.7
873,020 + CCNA_00809 0.43 +2.4
873,020 + CCNA_00809 0.43 -1.1
873,028 - CCNA_00809 0.44 +2.6
873,028 - CCNA_00809 0.44 +1.8
873,028 - CCNA_00809 0.44 +2.2
873,028 - CCNA_00809 0.44 +1.9
873,028 - CCNA_00809 0.44 +2.2
873,028 - CCNA_00809 0.44 +3.2
873,028 - CCNA_00809 0.44 +2.0
873,028 - CCNA_00809 0.44 +1.5
873,028 - CCNA_00809 0.44 +2.0
873,028 - CCNA_00809 0.44 +0.7
873,080 + CCNA_00809 0.49 -1.2
873,082 - CCNA_00809 0.49 +2.1
873,088 - CCNA_00809 0.50 -0.8
873,088 - CCNA_00809 0.50 -0.7
873,091 + CCNA_00809 0.50 +0.6
873,093 - CCNA_00809 0.51 -1.0
873,100 + CCNA_00809 0.51 +2.1
873,100 + CCNA_00809 0.51 +1.8
873,135 - CCNA_00809 0.55 +0.1
873,138 - CCNA_00809 0.55 +1.2
873,178 + CCNA_00809 0.59 -0.9
873,182 - CCNA_00809 0.59 -1.3
873,221 + CCNA_00809 0.63 +1.2
873,257 + CCNA_00809 0.67 -0.0
873,292 - CCNA_00809 0.70 -0.0
873,341 + CCNA_00809 0.75 -0.2
873,341 + CCNA_00809 0.75 +1.8
873,343 - CCNA_00809 0.76 +0.6
873,349 - CCNA_00809 0.76 +0.2
873,372 + CCNA_00809 0.79 -1.0
873,372 + CCNA_00809 0.79 -0.2
873,380 - CCNA_00809 0.79 -0.5
873,391 + CCNA_00809 0.80 -1.8
873,391 + CCNA_00809 0.80 -2.6
873,399 - CCNA_00809 0.81 +1.2
873,401 + CCNA_00809 0.81 +0.2
873,409 - CCNA_00809 0.82 +0.4
873,411 + CCNA_00809 0.82 -0.5
873,469 + CCNA_00809 0.88 -2.0
873,469 + CCNA_00809 0.88 -0.7
873,469 + CCNA_00809 0.88 +1.2
873,477 - CCNA_00809 0.89 +0.9
873,477 - CCNA_00809 0.89 +2.8
873,498 - +0.6
873,499 - -0.3
873,516 - -1.5
873,527 + -1.2
873,532 + +0.8
873,532 + -0.2
873,580 + +4.3
873,639 + -0.7
873,647 - -0.5
873,652 + -0.2
873,684 + +2.7
873,699 - +0.5
873,703 - -0.8
873,705 + +0.5
873,825 + -0.0
873,825 + -0.0
873,833 - -1.0
873,848 - +0.9
873,904 + CCNA_00810 0.14 -0.1
873,904 + CCNA_00810 0.14 +0.8
873,918 - CCNA_00810 0.15 +2.2
873,940 - CCNA_00810 0.17 -0.8
874,043 - CCNA_00810 0.26 -1.9
874,061 - CCNA_00810 0.28 -0.5
874,061 - CCNA_00810 0.28 +1.9
874,068 + CCNA_00810 0.28 +0.5
874,116 - CCNA_00810 0.33 +0.8
874,127 - CCNA_00810 0.34 -0.5
874,132 + CCNA_00810 0.34 -0.2
874,137 - CCNA_00810 0.34 -2.1
874,145 - CCNA_00810 0.35 +0.8
874,145 - CCNA_00810 0.35 -1.5
874,151 - CCNA_00810 0.36 +1.8
874,151 - CCNA_00810 0.36 +0.1
874,161 + CCNA_00810 0.36 +2.4
874,168 + CCNA_00810 0.37 -0.8
874,267 + CCNA_00810 0.46 -1.8
874,267 + CCNA_00810 0.46 +0.5
874,269 + CCNA_00810 0.46 -0.0
874,269 + CCNA_00810 0.46 -0.6
874,305 + CCNA_00810 0.49 -2.0
874,344 + CCNA_00810 0.52 +2.8
874,359 - CCNA_00810 0.54 +0.8
874,364 - CCNA_00810 0.54 -0.5
874,385 + CCNA_00810 0.56 -0.2
874,393 - CCNA_00810 0.57 +2.4
874,397 + CCNA_00810 0.57 +1.8
874,408 + CCNA_00810 0.58 -1.0
874,443 + CCNA_00810 0.61 +1.4
874,451 - CCNA_00810 0.62 +0.8
874,462 + CCNA_00810 0.63 +0.8
874,473 + CCNA_00810 0.64 +0.2
874,481 - CCNA_00810 0.64 -1.2
874,492 - CCNA_00810 0.65 +0.3
874,532 + CCNA_00810 0.69 -0.0
874,583 - CCNA_00810 0.73 +0.3

Or see this region's nucleotide sequence