Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00781

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00780 and CCNA_00781 are separated by 151 nucleotidesCCNA_00781 and CCNA_R0015 are separated by 109 nucleotidesCCNA_R0015 and CCNA_00782 are separated by 110 nucleotides CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686 _00780 CCNA_00781: CCNA_00781 - two-component receiver protein CpdR, at 841,838 to 842,194 _00781 CCNA_R0015: CCNA_R0015 - tRNA-Val, at 842,304 to 842,378 _R0015 CCNA_00782: CCNA_00782 - aminobenzoyl-glutamate transport protein, at 842,489 to 844,108 _00782 Position (kb) 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 840.863 kb on + strand, within CCNA_00780at 840.863 kb on + strand, within CCNA_00780at 840.863 kb on + strand, within CCNA_00780at 840.869 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.874 kb on - strand, within CCNA_00780at 840.899 kb on + strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.928 kb on + strand, within CCNA_00780at 840.930 kb on + strand, within CCNA_00780at 840.936 kb on - strand, within CCNA_00780at 840.936 kb on - strand, within CCNA_00780at 840.938 kb on - strand, within CCNA_00780at 840.945 kb on + strand, within CCNA_00780at 840.949 kb on + strand, within CCNA_00780at 840.957 kb on - strand, within CCNA_00780at 840.975 kb on - strand, within CCNA_00780at 840.979 kb on + strand, within CCNA_00780at 840.982 kb on - strand, within CCNA_00780at 840.995 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.056 kb on - strand, within CCNA_00780at 841.060 kb on + strand, within CCNA_00780at 841.097 kb on - strand, within CCNA_00780at 841.105 kb on + strand, within CCNA_00780at 841.139 kb on + strand, within CCNA_00780at 841.224 kb on - strand, within CCNA_00780at 841.254 kb on - strand, within CCNA_00780at 841.258 kb on - strand, within CCNA_00780at 841.261 kb on + strand, within CCNA_00780at 841.283 kb on + strand, within CCNA_00780at 841.283 kb on + strand, within CCNA_00780at 841.318 kb on + strand, within CCNA_00780at 841.318 kb on + strand, within CCNA_00780at 841.323 kb on + strand, within CCNA_00780at 841.326 kb on - strand, within CCNA_00780at 841.351 kb on - strand, within CCNA_00780at 841.351 kb on - strand, within CCNA_00780at 841.367 kb on + strand, within CCNA_00780at 841.368 kb on - strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.382 kb on - strand, within CCNA_00780at 841.389 kb on - strand, within CCNA_00780at 841.389 kb on - strand, within CCNA_00780at 841.419 kb on + strand, within CCNA_00780at 841.419 kb on - strand, within CCNA_00780at 841.436 kb on - strand, within CCNA_00780at 841.480 kb on - strand, within CCNA_00780at 841.514 kb on + strand, within CCNA_00780at 841.529 kb on + strand, within CCNA_00780at 841.529 kb on + strand, within CCNA_00780at 841.561 kb on + strand, within CCNA_00780at 841.569 kb on - strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.596 kb on - strandat 841.596 kb on - strandat 841.596 kb on - strandat 841.596 kb on - strandat 841.600 kb on + strandat 841.601 kb on - strandat 841.623 kb on + strandat 841.640 kb on + strandat 841.654 kb on - strandat 841.665 kb on + strandat 841.759 kb on + strandat 841.789 kb on + strandat 841.796 kb on + strandat 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.924 kb on + strand, within CCNA_00781at 841.927 kb on - strand, within CCNA_00781at 841.927 kb on - strand, within CCNA_00781at 841.927 kb on - strand, within CCNA_00781at 841.963 kb on - strand, within CCNA_00781at 842.013 kb on + strand, within CCNA_00781at 842.021 kb on - strand, within CCNA_00781at 842.021 kb on - strand, within CCNA_00781at 842.046 kb on + strand, within CCNA_00781at 842.073 kb on - strand, within CCNA_00781at 842.078 kb on - strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.137 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strandat 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.150 kb on - strand, within CCNA_00781at 842.179 kb on + strandat 842.187 kb on - strandat 842.476 kb on - strandat 842.484 kb on - strandat 842.522 kb on - strandat 842.549 kb on + strandat 842.559 kb on + strandat 842.559 kb on + strandat 842.567 kb on - strandat 842.567 kb on - strandat 842.567 kb on - strandat 842.597 kb on + strandat 842.597 kb on + strandat 842.597 kb on + strandat 842.602 kb on + strandat 842.604 kb on + strandat 842.604 kb on + strandat 842.605 kb on - strandat 842.605 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.616 kb on + strandat 842.617 kb on - strandat 842.622 kb on - strandat 842.651 kb on - strand, within CCNA_00782at 842.663 kb on + strand, within CCNA_00782at 842.664 kb on + strand, within CCNA_00782at 842.672 kb on - strand, within CCNA_00782at 842.688 kb on - strand, within CCNA_00782at 842.696 kb on - strand, within CCNA_00782at 842.728 kb on - strand, within CCNA_00782at 842.745 kb on + strand, within CCNA_00782at 842.745 kb on - strand, within CCNA_00782at 842.760 kb on + strand, within CCNA_00782at 842.763 kb on + strand, within CCNA_00782at 842.773 kb on - strand, within CCNA_00782at 842.781 kb on - strand, within CCNA_00782at 842.796 kb on - strand, within CCNA_00782at 842.805 kb on + strand, within CCNA_00782at 842.806 kb on - strand, within CCNA_00782at 842.806 kb on - strand, within CCNA_00782at 842.840 kb on + strand, within CCNA_00782at 842.840 kb on + strand, within CCNA_00782at 842.848 kb on - strand, within CCNA_00782at 842.848 kb on - strand, within CCNA_00782at 842.865 kb on + strand, within CCNA_00782at 842.878 kb on - strand, within CCNA_00782at 842.902 kb on - strand, within CCNA_00782at 842.911 kb on + strand, within CCNA_00782at 842.947 kb on - strand, within CCNA_00782at 843.029 kb on - strand, within CCNA_00782at 843.053 kb on + strand, within CCNA_00782at 843.065 kb on + strand, within CCNA_00782at 843.132 kb on + strand, within CCNA_00782at 843.132 kb on + strand, within CCNA_00782at 843.140 kb on - strand, within CCNA_00782at 843.140 kb on - strand, within CCNA_00782at 843.162 kb on + strand, within CCNA_00782at 843.170 kb on - strand, within CCNA_00782

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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840,863 + CCNA_00780 0.11 +1.2
840,863 + CCNA_00780 0.11 -0.4
840,863 + CCNA_00780 0.11 -2.0
840,869 - CCNA_00780 0.12 -0.7
840,871 - CCNA_00780 0.12 +1.8
840,871 - CCNA_00780 0.12 +1.3
840,871 - CCNA_00780 0.12 +2.2
840,874 - CCNA_00780 0.12 +1.0
840,899 + CCNA_00780 0.15 +1.6
840,907 - CCNA_00780 0.16 +1.3
840,907 - CCNA_00780 0.16 -0.1
840,907 - CCNA_00780 0.16 +0.6
840,928 + CCNA_00780 0.18 +1.9
840,930 + CCNA_00780 0.18 +0.9
840,936 - CCNA_00780 0.19 -0.4
840,936 - CCNA_00780 0.19 +0.3
840,938 - CCNA_00780 0.19 +1.3
840,945 + CCNA_00780 0.20 +1.6
840,949 + CCNA_00780 0.20 -0.9
840,957 - CCNA_00780 0.21 +0.3
840,975 - CCNA_00780 0.23 -1.1
840,979 + CCNA_00780 0.24 -1.7
840,982 - CCNA_00780 0.24 -0.9
840,995 - CCNA_00780 0.25 +1.4
841,006 - CCNA_00780 0.27 +1.6
841,006 - CCNA_00780 0.27 +0.3
841,006 - CCNA_00780 0.27 +0.1
841,056 - CCNA_00780 0.32 +0.4
841,060 + CCNA_00780 0.32 +1.9
841,097 - CCNA_00780 0.36 +0.3
841,105 + CCNA_00780 0.37 -1.4
841,139 + CCNA_00780 0.41 -0.0
841,224 - CCNA_00780 0.50 +0.8
841,254 - CCNA_00780 0.53 +0.3
841,258 - CCNA_00780 0.54 -0.6
841,261 + CCNA_00780 0.54 -0.1
841,283 + CCNA_00780 0.56 +1.9
841,283 + CCNA_00780 0.56 -1.0
841,318 + CCNA_00780 0.60 +0.6
841,318 + CCNA_00780 0.60 -1.4
841,323 + CCNA_00780 0.61 +2.3
841,326 - CCNA_00780 0.61 +0.7
841,351 - CCNA_00780 0.64 +1.5
841,351 - CCNA_00780 0.64 +1.2
841,367 + CCNA_00780 0.65 -0.3
841,368 - CCNA_00780 0.66 +1.9
841,381 + CCNA_00780 0.67 +0.1
841,381 + CCNA_00780 0.67 -0.4
841,381 + CCNA_00780 0.67 +0.2
841,382 - CCNA_00780 0.67 +2.4
841,389 - CCNA_00780 0.68 +1.6
841,389 - CCNA_00780 0.68 +1.5
841,419 + CCNA_00780 0.71 +0.2
841,419 - CCNA_00780 0.71 +1.7
841,436 - CCNA_00780 0.73 +1.7
841,480 - CCNA_00780 0.78 +1.7
841,514 + CCNA_00780 0.81 +1.0
841,529 + CCNA_00780 0.83 -0.4
841,529 + CCNA_00780 0.83 -0.9
841,561 + CCNA_00780 0.86 +1.3
841,569 - CCNA_00780 0.87 +0.2
841,588 + CCNA_00780 0.89 +0.3
841,588 + CCNA_00780 0.89 -1.8
841,588 + CCNA_00780 0.89 +0.6
841,596 - -0.2
841,596 - +0.2
841,596 - -0.4
841,596 - -0.2
841,600 + -0.9
841,601 - +0.7
841,623 + -0.3
841,640 + -0.3
841,654 - +1.9
841,665 + -0.3
841,759 + +1.3
841,789 + -1.2
841,796 + +0.1
841,919 + CCNA_00781 0.23 +2.5
841,919 + CCNA_00781 0.23 +2.8
841,919 + CCNA_00781 0.23 +3.1
841,919 + CCNA_00781 0.23 +3.1
841,919 + CCNA_00781 0.23 +3.0
841,924 + CCNA_00781 0.24 +2.4
841,927 - CCNA_00781 0.25 +0.6
841,927 - CCNA_00781 0.25 +0.1
841,927 - CCNA_00781 0.25 -1.0
841,963 - CCNA_00781 0.35 +0.6
842,013 + CCNA_00781 0.49 +2.6
842,021 - CCNA_00781 0.51 +2.9
842,021 - CCNA_00781 0.51 -0.3
842,046 + CCNA_00781 0.58 +1.6
842,073 - CCNA_00781 0.66 -0.0
842,078 - CCNA_00781 0.67 -1.4
842,099 + CCNA_00781 0.73 +3.1
842,099 + CCNA_00781 0.73 +2.4
842,099 + CCNA_00781 0.73 +2.9
842,099 + CCNA_00781 0.73 +2.1
842,099 + CCNA_00781 0.73 +2.3
842,099 + CCNA_00781 0.73 +1.9
842,099 + CCNA_00781 0.73 +2.5
842,099 + CCNA_00781 0.73 +3.2
842,099 + CCNA_00781 0.73 +2.2
842,099 + CCNA_00781 0.73 +2.7
842,099 + CCNA_00781 0.73 +2.3
842,099 + CCNA_00781 0.73 +2.8
842,099 + CCNA_00781 0.73 +3.4
842,107 - CCNA_00781 0.75 -1.1
842,107 - CCNA_00781 0.75 -0.1
842,107 - CCNA_00781 0.75 +0.6
842,107 - CCNA_00781 0.75 -0.2
842,107 - CCNA_00781 0.75 -1.1
842,107 - CCNA_00781 0.75 +0.6
842,107 - CCNA_00781 0.75 +1.9
842,107 - CCNA_00781 0.75 +2.9
842,107 - CCNA_00781 0.75 -0.6
842,107 - CCNA_00781 0.75 +0.7
842,134 + CCNA_00781 0.83 +4.2
842,134 + CCNA_00781 0.83 +2.6
842,134 + CCNA_00781 0.83 +2.8
842,134 + CCNA_00781 0.83 +3.1
842,134 + CCNA_00781 0.83 +3.1
842,134 + CCNA_00781 0.83 +2.1
842,134 + CCNA_00781 0.83 +2.5
842,134 + CCNA_00781 0.83 +2.4
842,134 + CCNA_00781 0.83 +2.7
842,134 + CCNA_00781 0.83 +3.0
842,134 + CCNA_00781 0.83 +2.4
842,134 + CCNA_00781 0.83 +3.1
842,134 + CCNA_00781 0.83 +2.2
842,134 + CCNA_00781 0.83 +2.3
842,134 + CCNA_00781 0.83 +3.0
842,134 + CCNA_00781 0.83 +2.5
842,134 + CCNA_00781 0.83 +1.9
842,134 + CCNA_00781 0.83 +2.6
842,134 + CCNA_00781 0.83 +4.3
842,134 + CCNA_00781 0.83 +2.9
842,137 - CCNA_00781 0.84 +0.3
842,142 - CCNA_00781 0.85 -0.6
842,142 - CCNA_00781 0.85 -0.4
842,142 - CCNA_00781 0.85 -1.4
842,142 - CCNA_00781 0.85 +0.7
842,142 - CCNA_00781 0.85 -0.3
842,142 - +0.9
842,142 - CCNA_00781 0.85 -0.3
842,142 - CCNA_00781 0.85 +0.3
842,142 - CCNA_00781 0.85 -2.5
842,142 - CCNA_00781 0.85 +1.9
842,142 - CCNA_00781 0.85 +0.9
842,150 - CCNA_00781 0.87 -1.2
842,179 + +2.4
842,187 - +0.6
842,476 - +1.9
842,484 - +2.0
842,522 - +1.3
842,549 + -0.1
842,559 + +2.9
842,559 + -0.6
842,567 - +2.1
842,567 - +2.0
842,567 - +2.6
842,597 + +0.7
842,597 + -0.8
842,597 + +2.1
842,602 + +0.9
842,604 + +1.9
842,604 + -1.9
842,605 - +2.1
842,605 - +2.8
842,612 - +1.6
842,612 - +2.7
842,612 - +2.1
842,612 - -0.1
842,612 - +1.7
842,616 + +1.3
842,617 - -0.3
842,622 - +3.8
842,651 - CCNA_00782 0.10 +2.2
842,663 + CCNA_00782 0.11 -0.8
842,664 + CCNA_00782 0.11 -1.1
842,672 - CCNA_00782 0.11 +2.9
842,688 - CCNA_00782 0.12 +2.9
842,696 - CCNA_00782 0.13 +0.5
842,728 - CCNA_00782 0.15 +1.7
842,745 + CCNA_00782 0.16 -0.7
842,745 - CCNA_00782 0.16 +0.4
842,760 + CCNA_00782 0.17 -1.2
842,763 + CCNA_00782 0.17 +0.1
842,773 - CCNA_00782 0.18 +1.7
842,781 - CCNA_00782 0.18 +0.2
842,796 - CCNA_00782 0.19 +0.6
842,805 + CCNA_00782 0.20 -1.1
842,806 - CCNA_00782 0.20 -0.7
842,806 - CCNA_00782 0.20 +4.1
842,840 + CCNA_00782 0.22 -0.8
842,840 + CCNA_00782 0.22 -0.3
842,848 - CCNA_00782 0.22 +0.7
842,848 - CCNA_00782 0.22 +0.4
842,865 + CCNA_00782 0.23 +1.9
842,878 - CCNA_00782 0.24 +0.6
842,902 - CCNA_00782 0.25 -2.1
842,911 + CCNA_00782 0.26 -2.0
842,947 - CCNA_00782 0.28 +1.0
843,029 - CCNA_00782 0.33 +0.0
843,053 + CCNA_00782 0.35 +0.9
843,065 + CCNA_00782 0.36 -2.0
843,132 + CCNA_00782 0.40 -0.9
843,132 + CCNA_00782 0.40 +0.3
843,140 - CCNA_00782 0.40 -1.3
843,140 - CCNA_00782 0.40 +0.7
843,162 + CCNA_00782 0.42 -0.9
843,170 - CCNA_00782 0.42 -0.9

Or see this region's nucleotide sequence