Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00778 and CCNA_00779 are separated by 566 nucleotides CCNA_00779 and CCNA_00780 are separated by 13 nucleotides CCNA_00780 and CCNA_00781 are separated by 151 nucleotides CCNA_00781 and CCNA_R0015 are separated by 109 nucleotides CCNA_R0015 and CCNA_00782 are separated by 110 nucleotides
CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778
_00778
CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746
_00779
CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686
_00780
CCNA_00781: CCNA_00781 - two-component receiver protein CpdR, at 841,838 to 842,194
_00781
CCNA_R0015: CCNA_R0015 - tRNA-Val, at 842,304 to 842,378
_R0015
CCNA_00782: CCNA_00782 - aminobenzoyl-glutamate transport protein, at 842,489 to 844,108
_00782
Position (kb) 840
841
842 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 839.802 kb on + strand at 839.810 kb on - strand at 839.817 kb on - strand at 839.832 kb on - strand at 839.884 kb on - strand at 840.100 kb on - strand at 840.244 kb on + strand at 840.244 kb on + strand at 840.250 kb on - strand at 840.262 kb on + strand at 840.271 kb on + strand at 840.319 kb on - strand at 840.350 kb on - strand at 840.385 kb on + strand at 840.385 kb on + strand at 840.393 kb on - strand, within CCNA_00779 at 840.393 kb on - strand, within CCNA_00779 at 840.395 kb on + strand, within CCNA_00779 at 840.403 kb on - strand, within CCNA_00779 at 840.450 kb on + strand, within CCNA_00779 at 840.452 kb on + strand, within CCNA_00779 at 840.466 kb on + strand, within CCNA_00779 at 840.474 kb on - strand, within CCNA_00779 at 840.488 kb on + strand, within CCNA_00779 at 840.515 kb on + strand, within CCNA_00779 at 840.523 kb on - strand, within CCNA_00779 at 840.536 kb on + strand, within CCNA_00779 at 840.556 kb on + strand, within CCNA_00779 at 840.600 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.616 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.637 kb on + strand, within CCNA_00779 at 840.657 kb on + strand, within CCNA_00779 at 840.670 kb on - strand, within CCNA_00779 at 840.761 kb on - strand at 840.763 kb on + strand at 840.771 kb on - strand at 840.772 kb on + strand at 840.777 kb on + strand at 840.780 kb on - strand at 840.782 kb on + strand at 840.782 kb on + strand at 840.782 kb on + strand at 840.785 kb on - strand at 840.826 kb on - strand at 840.836 kb on - strand at 840.863 kb on + strand, within CCNA_00780 at 840.863 kb on + strand, within CCNA_00780 at 840.863 kb on + strand, within CCNA_00780 at 840.869 kb on - strand, within CCNA_00780 at 840.871 kb on - strand, within CCNA_00780 at 840.871 kb on - strand, within CCNA_00780 at 840.871 kb on - strand, within CCNA_00780 at 840.874 kb on - strand, within CCNA_00780 at 840.899 kb on + strand, within CCNA_00780 at 840.907 kb on - strand, within CCNA_00780 at 840.907 kb on - strand, within CCNA_00780 at 840.907 kb on - strand, within CCNA_00780 at 840.928 kb on + strand, within CCNA_00780 at 840.930 kb on + strand, within CCNA_00780 at 840.936 kb on - strand, within CCNA_00780 at 840.936 kb on - strand, within CCNA_00780 at 840.938 kb on - strand, within CCNA_00780 at 840.945 kb on + strand, within CCNA_00780 at 840.949 kb on + strand, within CCNA_00780 at 840.957 kb on - strand, within CCNA_00780 at 840.975 kb on - strand, within CCNA_00780 at 840.979 kb on + strand, within CCNA_00780 at 840.982 kb on - strand, within CCNA_00780 at 840.995 kb on - strand, within CCNA_00780 at 841.006 kb on - strand, within CCNA_00780 at 841.006 kb on - strand, within CCNA_00780 at 841.006 kb on - strand, within CCNA_00780 at 841.056 kb on - strand, within CCNA_00780 at 841.060 kb on + strand, within CCNA_00780 at 841.097 kb on - strand, within CCNA_00780 at 841.105 kb on + strand, within CCNA_00780 at 841.139 kb on + strand, within CCNA_00780 at 841.224 kb on - strand, within CCNA_00780 at 841.254 kb on - strand, within CCNA_00780 at 841.258 kb on - strand, within CCNA_00780 at 841.261 kb on + strand, within CCNA_00780 at 841.283 kb on + strand, within CCNA_00780 at 841.283 kb on + strand, within CCNA_00780 at 841.318 kb on + strand, within CCNA_00780 at 841.318 kb on + strand, within CCNA_00780 at 841.323 kb on + strand, within CCNA_00780 at 841.326 kb on - strand, within CCNA_00780 at 841.351 kb on - strand, within CCNA_00780 at 841.351 kb on - strand, within CCNA_00780 at 841.367 kb on + strand, within CCNA_00780 at 841.368 kb on - strand, within CCNA_00780 at 841.381 kb on + strand, within CCNA_00780 at 841.381 kb on + strand, within CCNA_00780 at 841.381 kb on + strand, within CCNA_00780 at 841.382 kb on - strand, within CCNA_00780 at 841.389 kb on - strand, within CCNA_00780 at 841.389 kb on - strand, within CCNA_00780 at 841.419 kb on + strand, within CCNA_00780 at 841.419 kb on - strand, within CCNA_00780 at 841.436 kb on - strand, within CCNA_00780 at 841.480 kb on - strand, within CCNA_00780 at 841.514 kb on + strand, within CCNA_00780 at 841.529 kb on + strand, within CCNA_00780 at 841.529 kb on + strand, within CCNA_00780 at 841.561 kb on + strand, within CCNA_00780 at 841.569 kb on - strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.596 kb on - strand at 841.596 kb on - strand at 841.596 kb on - strand at 841.596 kb on - strand at 841.600 kb on + strand at 841.601 kb on - strand at 841.623 kb on + strand at 841.640 kb on + strand at 841.654 kb on - strand at 841.665 kb on + strand at 841.759 kb on + strand at 841.789 kb on + strand at 841.796 kb on + strand at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.924 kb on + strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.963 kb on - strand, within CCNA_00781 at 842.013 kb on + strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.046 kb on + strand, within CCNA_00781 at 842.073 kb on - strand, within CCNA_00781 at 842.078 kb on - strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.137 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.150 kb on - strand, within CCNA_00781 at 842.179 kb on + strand at 842.187 kb on - strand at 842.476 kb on - strand at 842.484 kb on - strand at 842.522 kb on - strand at 842.549 kb on + strand at 842.559 kb on + strand at 842.559 kb on + strand at 842.567 kb on - strand at 842.567 kb on - strand at 842.567 kb on - strand at 842.597 kb on + strand at 842.597 kb on + strand at 842.597 kb on + strand at 842.602 kb on + strand at 842.604 kb on + strand at 842.604 kb on + strand at 842.605 kb on - strand at 842.605 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.616 kb on + strand at 842.617 kb on - strand at 842.622 kb on - strand at 842.651 kb on - strand, within CCNA_00782 at 842.663 kb on + strand, within CCNA_00782 at 842.664 kb on + strand, within CCNA_00782 at 842.672 kb on - strand, within CCNA_00782
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 839,802 + +0.9 839,810 - +0.7 839,817 - +1.2 839,832 - +0.3 839,884 - +1.3 840,100 - -1.7 840,244 + +1.0 840,244 + +2.9 840,250 - +1.9 840,262 + +1.1 840,271 + +0.9 840,319 - -0.3 840,350 - +1.3 840,385 + -0.1 840,385 + +0.4 840,393 - CCNA_00779 0.12 +0.4 840,393 - CCNA_00779 0.12 -2.0 840,395 + CCNA_00779 0.12 +0.6 840,403 - CCNA_00779 0.14 +0.1 840,450 + CCNA_00779 0.26 +0.9 840,452 + CCNA_00779 0.27 -1.2 840,466 + CCNA_00779 0.30 +1.3 840,474 - CCNA_00779 0.32 -0.1 840,488 + CCNA_00779 0.36 +0.9 840,515 + CCNA_00779 0.42 -1.0 840,523 - CCNA_00779 0.44 +0.3 840,536 + CCNA_00779 0.48 +0.9 840,556 + CCNA_00779 0.52 +1.9 840,600 + CCNA_00779 0.63 -0.3 840,601 + CCNA_00779 0.64 -0.9 840,601 + CCNA_00779 0.64 +1.9 840,601 + CCNA_00779 0.64 +0.3 840,601 + CCNA_00779 0.64 -1.1 840,609 - CCNA_00779 0.66 +0.9 840,609 - CCNA_00779 0.66 -0.9 840,609 - CCNA_00779 0.66 +2.5 840,616 + CCNA_00779 0.67 +0.6 840,621 + CCNA_00779 0.69 -0.4 840,621 + CCNA_00779 0.69 -1.0 840,621 + CCNA_00779 0.69 -1.9 840,629 - CCNA_00779 0.71 +0.9 840,629 - CCNA_00779 0.71 -0.7 840,637 + CCNA_00779 0.73 -1.4 840,657 + CCNA_00779 0.78 +0.0 840,670 - CCNA_00779 0.81 +0.6 840,761 - +1.7 840,763 + +0.2 840,771 - +0.9 840,772 + -0.1 840,777 + -1.4 840,780 - -0.9 840,782 + -1.4 840,782 + -1.8 840,782 + +0.6 840,785 - +1.1 840,826 - -1.4 840,836 - +0.6 840,863 + CCNA_00780 0.11 +1.2 840,863 + CCNA_00780 0.11 -0.4 840,863 + CCNA_00780 0.11 -2.0 840,869 - CCNA_00780 0.12 -0.7 840,871 - CCNA_00780 0.12 +1.8 840,871 - CCNA_00780 0.12 +1.3 840,871 - CCNA_00780 0.12 +2.2 840,874 - CCNA_00780 0.12 +1.0 840,899 + CCNA_00780 0.15 +1.6 840,907 - CCNA_00780 0.16 +1.3 840,907 - CCNA_00780 0.16 -0.1 840,907 - CCNA_00780 0.16 +0.6 840,928 + CCNA_00780 0.18 +1.9 840,930 + CCNA_00780 0.18 +0.9 840,936 - CCNA_00780 0.19 -0.4 840,936 - CCNA_00780 0.19 +0.3 840,938 - CCNA_00780 0.19 +1.3 840,945 + CCNA_00780 0.20 +1.6 840,949 + CCNA_00780 0.20 -0.9 840,957 - CCNA_00780 0.21 +0.3 840,975 - CCNA_00780 0.23 -1.1 840,979 + CCNA_00780 0.24 -1.7 840,982 - CCNA_00780 0.24 -0.9 840,995 - CCNA_00780 0.25 +1.4 841,006 - CCNA_00780 0.27 +1.6 841,006 - CCNA_00780 0.27 +0.3 841,006 - CCNA_00780 0.27 +0.1 841,056 - CCNA_00780 0.32 +0.4 841,060 + CCNA_00780 0.32 +1.9 841,097 - CCNA_00780 0.36 +0.3 841,105 + CCNA_00780 0.37 -1.4 841,139 + CCNA_00780 0.41 -0.0 841,224 - CCNA_00780 0.50 +0.8 841,254 - CCNA_00780 0.53 +0.3 841,258 - CCNA_00780 0.54 -0.6 841,261 + CCNA_00780 0.54 -0.1 841,283 + CCNA_00780 0.56 +1.9 841,283 + CCNA_00780 0.56 -1.0 841,318 + CCNA_00780 0.60 +0.6 841,318 + CCNA_00780 0.60 -1.4 841,323 + CCNA_00780 0.61 +2.3 841,326 - CCNA_00780 0.61 +0.7 841,351 - CCNA_00780 0.64 +1.5 841,351 - CCNA_00780 0.64 +1.2 841,367 + CCNA_00780 0.65 -0.3 841,368 - CCNA_00780 0.66 +1.9 841,381 + CCNA_00780 0.67 +0.1 841,381 + CCNA_00780 0.67 -0.4 841,381 + CCNA_00780 0.67 +0.2 841,382 - CCNA_00780 0.67 +2.4 841,389 - CCNA_00780 0.68 +1.6 841,389 - CCNA_00780 0.68 +1.5 841,419 + CCNA_00780 0.71 +0.2 841,419 - CCNA_00780 0.71 +1.7 841,436 - CCNA_00780 0.73 +1.7 841,480 - CCNA_00780 0.78 +1.7 841,514 + CCNA_00780 0.81 +1.0 841,529 + CCNA_00780 0.83 -0.4 841,529 + CCNA_00780 0.83 -0.9 841,561 + CCNA_00780 0.86 +1.3 841,569 - CCNA_00780 0.87 +0.2 841,588 + CCNA_00780 0.89 +0.3 841,588 + CCNA_00780 0.89 -1.8 841,588 + CCNA_00780 0.89 +0.6 841,596 - -0.2 841,596 - +0.2 841,596 - -0.4 841,596 - -0.2 841,600 + -0.9 841,601 - +0.7 841,623 + -0.3 841,640 + -0.3 841,654 - +1.9 841,665 + -0.3 841,759 + +1.3 841,789 + -1.2 841,796 + +0.1 841,919 + CCNA_00781 0.23 +2.5 841,919 + CCNA_00781 0.23 +2.8 841,919 + CCNA_00781 0.23 +3.1 841,919 + CCNA_00781 0.23 +3.1 841,919 + CCNA_00781 0.23 +3.0 841,924 + CCNA_00781 0.24 +2.4 841,927 - CCNA_00781 0.25 +0.6 841,927 - CCNA_00781 0.25 +0.1 841,927 - CCNA_00781 0.25 -1.0 841,963 - CCNA_00781 0.35 +0.6 842,013 + CCNA_00781 0.49 +2.6 842,021 - CCNA_00781 0.51 +2.9 842,021 - CCNA_00781 0.51 -0.3 842,046 + CCNA_00781 0.58 +1.6 842,073 - CCNA_00781 0.66 -0.0 842,078 - CCNA_00781 0.67 -1.4 842,099 + CCNA_00781 0.73 +3.1 842,099 + CCNA_00781 0.73 +2.4 842,099 + CCNA_00781 0.73 +2.9 842,099 + CCNA_00781 0.73 +2.1 842,099 + CCNA_00781 0.73 +2.3 842,099 + CCNA_00781 0.73 +1.9 842,099 + CCNA_00781 0.73 +2.5 842,099 + CCNA_00781 0.73 +3.2 842,099 + CCNA_00781 0.73 +2.2 842,099 + CCNA_00781 0.73 +2.7 842,099 + CCNA_00781 0.73 +2.3 842,099 + CCNA_00781 0.73 +2.8 842,099 + CCNA_00781 0.73 +3.4 842,107 - CCNA_00781 0.75 -1.1 842,107 - CCNA_00781 0.75 -0.1 842,107 - CCNA_00781 0.75 +0.6 842,107 - CCNA_00781 0.75 -0.2 842,107 - CCNA_00781 0.75 -1.1 842,107 - CCNA_00781 0.75 +0.6 842,107 - CCNA_00781 0.75 +1.9 842,107 - CCNA_00781 0.75 +2.9 842,107 - CCNA_00781 0.75 -0.6 842,107 - CCNA_00781 0.75 +0.7 842,134 + CCNA_00781 0.83 +4.2 842,134 + CCNA_00781 0.83 +2.6 842,134 + CCNA_00781 0.83 +2.8 842,134 + CCNA_00781 0.83 +3.1 842,134 + CCNA_00781 0.83 +3.1 842,134 + CCNA_00781 0.83 +2.1 842,134 + CCNA_00781 0.83 +2.5 842,134 + CCNA_00781 0.83 +2.4 842,134 + CCNA_00781 0.83 +2.7 842,134 + CCNA_00781 0.83 +3.0 842,134 + CCNA_00781 0.83 +2.4 842,134 + CCNA_00781 0.83 +3.1 842,134 + CCNA_00781 0.83 +2.2 842,134 + CCNA_00781 0.83 +2.3 842,134 + CCNA_00781 0.83 +3.0 842,134 + CCNA_00781 0.83 +2.5 842,134 + CCNA_00781 0.83 +1.9 842,134 + CCNA_00781 0.83 +2.6 842,134 + CCNA_00781 0.83 +4.3 842,134 + CCNA_00781 0.83 +2.9 842,137 - CCNA_00781 0.84 +0.3 842,142 - CCNA_00781 0.85 -0.6 842,142 - CCNA_00781 0.85 -0.4 842,142 - CCNA_00781 0.85 -1.4 842,142 - CCNA_00781 0.85 +0.7 842,142 - CCNA_00781 0.85 -0.3 842,142 - +0.9 842,142 - CCNA_00781 0.85 -0.3 842,142 - CCNA_00781 0.85 +0.3 842,142 - CCNA_00781 0.85 -2.5 842,142 - CCNA_00781 0.85 +1.9 842,142 - CCNA_00781 0.85 +0.9 842,150 - CCNA_00781 0.87 -1.2 842,179 + +2.4 842,187 - +0.6 842,476 - +1.9 842,484 - +2.0 842,522 - +1.3 842,549 + -0.1 842,559 + +2.9 842,559 + -0.6 842,567 - +2.1 842,567 - +2.0 842,567 - +2.6 842,597 + +0.7 842,597 + -0.8 842,597 + +2.1 842,602 + +0.9 842,604 + +1.9 842,604 + -1.9 842,605 - +2.1 842,605 - +2.8 842,612 - +1.6 842,612 - +2.7 842,612 - +2.1 842,612 - -0.1 842,612 - +1.7 842,616 + +1.3 842,617 - -0.3 842,622 - +3.8 842,651 - CCNA_00782 0.10 +2.2 842,663 + CCNA_00782 0.11 -0.8 842,664 + CCNA_00782 0.11 -1.1 842,672 - CCNA_00782 0.11 +2.9
Or see this region's nucleotide sequence