Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00735

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00734 and CCNA_00735 are separated by 61 nucleotidesCCNA_00735 and CCNA_00736 are separated by 112 nucleotidesCCNA_00736 and CCNA_00737 are separated by 146 nucleotides CCNA_00734: CCNA_00734 - GumN superfamily protein, at 791,491 to 792,399 _00734 CCNA_00735: CCNA_00735 - beta-barrel assembly machine (BAM) protein BamF, at 792,461 to 793,030 _00735 CCNA_00736: CCNA_00736 - lipoprotein signal peptidase, at 793,143 to 793,649 _00736 CCNA_00737: CCNA_00737 - isoleucyl-tRNA synthetase, at 793,796 to 796,705 _00737 Position (kb) 792 793 794Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 791.481 kb on - strandat 791.490 kb on + strandat 791.490 kb on + strandat 791.500 kb on + strandat 791.500 kb on + strandat 791.508 kb on - strandat 791.510 kb on + strandat 791.515 kb on + strandat 791.520 kb on + strandat 791.608 kb on - strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.741 kb on - strand, within CCNA_00734at 791.748 kb on + strand, within CCNA_00734at 791.757 kb on + strand, within CCNA_00734at 791.765 kb on - strand, within CCNA_00734at 791.811 kb on + strand, within CCNA_00734at 791.848 kb on + strand, within CCNA_00734at 791.856 kb on - strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.931 kb on - strand, within CCNA_00734at 791.931 kb on - strand, within CCNA_00734at 791.940 kb on + strand, within CCNA_00734at 791.993 kb on + strand, within CCNA_00734at 791.995 kb on + strand, within CCNA_00734at 792.003 kb on - strand, within CCNA_00734at 792.003 kb on - strand, within CCNA_00734at 792.072 kb on - strand, within CCNA_00734at 792.104 kb on + strand, within CCNA_00734at 792.112 kb on - strand, within CCNA_00734at 792.148 kb on + strand, within CCNA_00734at 792.187 kb on - strand, within CCNA_00734at 792.246 kb on + strand, within CCNA_00734at 792.246 kb on + strand, within CCNA_00734at 792.260 kb on - strand, within CCNA_00734at 792.273 kb on - strand, within CCNA_00734at 792.301 kb on + strand, within CCNA_00734at 792.302 kb on + strand, within CCNA_00734at 792.305 kb on - strand, within CCNA_00734at 792.376 kb on + strandat 792.410 kb on + strandat 792.410 kb on + strandat 792.418 kb on - strandat 792.425 kb on + strandat 792.425 kb on + strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.508 kb on - strandat 792.555 kb on - strand, within CCNA_00735at 792.620 kb on - strand, within CCNA_00735at 793.036 kb on - strandat 793.047 kb on + strandat 793.105 kb on + strandat 793.113 kb on - strandat 793.113 kb on - strandat 793.638 kb on - strandat 793.656 kb on - strandat 793.705 kb on + strandat 793.710 kb on + strandat 793.710 kb on + strandat 793.713 kb on - strandat 793.713 kb on - strandat 793.730 kb on - strandat 793.735 kb on + strandat 793.735 kb on + strandat 793.749 kb on - strandat 793.786 kb on + strandat 793.805 kb on + strandat 793.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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791,481 - +0.8
791,490 + +1.3
791,490 + +0.6
791,500 + -0.3
791,500 + -0.2
791,508 - -0.3
791,510 + -1.5
791,515 + +1.1
791,520 + +0.6
791,608 - CCNA_00734 0.13 +0.8
791,643 + CCNA_00734 0.17 -1.3
791,643 + CCNA_00734 0.17 +1.8
791,643 + CCNA_00734 0.17 -0.1
791,723 - CCNA_00734 0.26 +0.0
791,723 - CCNA_00734 0.26 -1.2
791,723 - CCNA_00734 0.26 +0.8
791,741 - CCNA_00734 0.28 -0.2
791,748 + CCNA_00734 0.28 +0.9
791,757 + CCNA_00734 0.29 -0.2
791,765 - CCNA_00734 0.30 +0.3
791,811 + CCNA_00734 0.35 +1.3
791,848 + CCNA_00734 0.39 -0.9
791,856 - CCNA_00734 0.40 +0.0
791,923 + CCNA_00734 0.48 +0.1
791,923 + CCNA_00734 0.48 +0.7
791,923 + CCNA_00734 0.48 +0.8
791,923 + CCNA_00734 0.48 +1.6
791,923 + CCNA_00734 0.48 +1.1
791,923 + CCNA_00734 0.48 +0.1
791,931 - CCNA_00734 0.48 -1.5
791,931 - CCNA_00734 0.48 -0.7
791,940 + CCNA_00734 0.49 +1.1
791,993 + CCNA_00734 0.55 +1.3
791,995 + CCNA_00734 0.55 +2.2
792,003 - CCNA_00734 0.56 -1.1
792,003 - CCNA_00734 0.56 -0.3
792,072 - CCNA_00734 0.64 +0.3
792,104 + CCNA_00734 0.67 +0.3
792,112 - CCNA_00734 0.68 -0.0
792,148 + CCNA_00734 0.72 -1.3
792,187 - CCNA_00734 0.77 +0.1
792,246 + CCNA_00734 0.83 -0.3
792,246 + CCNA_00734 0.83 +0.4
792,260 - CCNA_00734 0.85 +0.4
792,273 - CCNA_00734 0.86 -2.4
792,301 + CCNA_00734 0.89 -0.8
792,302 + CCNA_00734 0.89 +0.6
792,305 - CCNA_00734 0.90 -2.3
792,376 + +0.2
792,410 + +2.8
792,410 + +0.7
792,418 - +1.0
792,425 + +0.5
792,425 + -1.4
792,433 - +4.2
792,433 - +4.3
792,433 - +4.1
792,433 - +4.3
792,508 - +0.3
792,555 - CCNA_00735 0.16 -0.8
792,620 - CCNA_00735 0.28 +0.0
793,036 - +1.1
793,047 + -1.4
793,105 + +1.8
793,113 - +0.8
793,113 - +0.0
793,638 - +0.5
793,656 - +2.3
793,705 + -0.1
793,710 + -1.4
793,710 + +0.2
793,713 - +3.6
793,713 - +1.3
793,730 - +2.5
793,735 + -0.7
793,735 + -0.3
793,749 - +3.3
793,786 + -2.0
793,805 + -0.9
793,810 + -1.0

Or see this region's nucleotide sequence