Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00716

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03926 and CCNA_00714 are separated by 16 nucleotidesCCNA_00714 and CCNA_03927 are separated by 88 nucleotidesCCNA_03927 and CCNA_03928 are separated by 41 nucleotidesCCNA_03928 and CCNA_00716 are separated by 63 nucleotidesCCNA_00716 and CCNA_03929 are separated by 153 nucleotidesCCNA_03929 and CCNA_00718 are separated by 52 nucleotides CCNA_03926: CCNA_03926 - hypothetical protein, at 770,292 to 770,423 _03926 CCNA_00714: CCNA_00714 - hypothetical protein, at 770,440 to 770,709 _00714 CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094 _03927 CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327 _03928 CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567 _00716 CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834 _03929 CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783 _00718 Position (kb) 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 770.393 kb on + strand, within CCNA_03926at 770.401 kb on - strand, within CCNA_03926at 770.401 kb on - strand, within CCNA_03926at 770.401 kb on - strand, within CCNA_03926at 770.403 kb on + strand, within CCNA_03926at 770.418 kb on - strandat 770.428 kb on - strandat 770.428 kb on - strandat 770.438 kb on - strandat 770.458 kb on - strandat 770.465 kb on - strandat 770.484 kb on - strand, within CCNA_00714at 770.484 kb on - strand, within CCNA_00714at 770.499 kb on - strand, within CCNA_00714at 770.501 kb on + strand, within CCNA_00714at 770.507 kb on + strand, within CCNA_00714at 770.515 kb on - strand, within CCNA_00714at 770.526 kb on + strand, within CCNA_00714at 770.531 kb on + strand, within CCNA_00714at 770.531 kb on + strand, within CCNA_00714at 770.548 kb on + strand, within CCNA_00714at 770.569 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.588 kb on - strand, within CCNA_00714at 770.603 kb on + strand, within CCNA_00714at 770.608 kb on + strand, within CCNA_00714at 770.619 kb on + strand, within CCNA_00714at 770.624 kb on + strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.629 kb on + strand, within CCNA_00714at 770.632 kb on - strand, within CCNA_00714at 770.638 kb on + strand, within CCNA_00714at 770.638 kb on + strand, within CCNA_00714at 770.654 kb on - strand, within CCNA_00714at 770.682 kb on - strand, within CCNA_00714at 770.698 kb on + strandat 770.709 kb on + strandat 770.768 kb on + strandat 770.789 kb on + strandat 770.794 kb on + strandat 770.833 kb on + strand, within CCNA_03927at 770.833 kb on + strand, within CCNA_03927at 770.993 kb on - strand, within CCNA_03927at 771.000 kb on - strand, within CCNA_03927at 771.024 kb on - strand, within CCNA_03927at 771.031 kb on - strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.041 kb on - strand, within CCNA_03927at 771.109 kb on + strandat 771.109 kb on + strandat 771.114 kb on + strandat 771.133 kb on + strandat 771.133 kb on + strandat 771.135 kb on + strandat 771.135 kb on + strandat 771.143 kb on - strandat 771.176 kb on + strand, within CCNA_03928at 771.181 kb on + strand, within CCNA_03928at 771.184 kb on - strand, within CCNA_03928at 771.189 kb on - strand, within CCNA_03928at 771.194 kb on + strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.239 kb on + strand, within CCNA_03928at 771.259 kb on + strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.273 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.306 kb on + strand, within CCNA_03928at 771.316 kb on + strandat 771.336 kb on + strandat 771.344 kb on - strandat 771.344 kb on - strandat 771.373 kb on + strandat 771.378 kb on + strandat 771.378 kb on + strandat 771.381 kb on - strandat 771.381 kb on - strandat 771.386 kb on - strandat 771.396 kb on - strandat 771.397 kb on - strandat 771.406 kb on - strandat 771.406 kb on - strandat 771.427 kb on + strand, within CCNA_00716at 771.428 kb on + strand, within CCNA_00716at 771.431 kb on - strand, within CCNA_00716at 771.448 kb on - strand, within CCNA_00716at 771.449 kb on + strand, within CCNA_00716at 771.449 kb on + strand, within CCNA_00716at 771.457 kb on - strand, within CCNA_00716at 771.457 kb on - strand, within CCNA_00716at 771.475 kb on + strand, within CCNA_00716at 771.475 kb on + strand, within CCNA_00716at 771.540 kb on - strand, within CCNA_00716at 771.560 kb on - strandat 771.564 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.661 kb on - strandat 771.682 kb on + strandat 771.683 kb on + strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.719 kb on + strandat 771.719 kb on + strandat 771.719 kb on + strandat 771.727 kb on - strandat 771.727 kb on - strandat 771.727 kb on - strandat 771.727 kb on - strandat 771.732 kb on - strandat 771.773 kb on - strand, within CCNA_03929at 771.806 kb on + strand, within CCNA_03929at 771.810 kb on - strand, within CCNA_03929at 771.840 kb on - strandat 771.852 kb on + strandat 771.869 kb on - strandat 771.875 kb on + strandat 771.886 kb on + strandat 771.893 kb on - strandat 771.893 kb on - strandat 771.901 kb on - strandat 771.913 kb on + strandat 771.921 kb on - strandat 771.940 kb on - strandat 771.962 kb on - strandat 771.962 kb on - strandat 771.963 kb on - strandat 771.976 kb on + strandat 771.984 kb on - strand, within CCNA_00718at 771.984 kb on - strand, within CCNA_00718at 771.984 kb on - strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.007 kb on + strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.020 kb on - strand, within CCNA_00718at 772.066 kb on + strand, within CCNA_00718at 772.100 kb on + strand, within CCNA_00718at 772.107 kb on - strand, within CCNA_00718at 772.115 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.169 kb on - strand, within CCNA_00718at 772.212 kb on + strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.229 kb on + strand, within CCNA_00718at 772.285 kb on + strand, within CCNA_00718at 772.341 kb on - strand, within CCNA_00718at 772.355 kb on - strand, within CCNA_00718at 772.355 kb on - strand, within CCNA_00718at 772.356 kb on + strand, within CCNA_00718at 772.358 kb on + strand, within CCNA_00718at 772.366 kb on + strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.390 kb on - strand, within CCNA_00718at 772.432 kb on - strand, within CCNA_00718at 772.432 kb on - strand, within CCNA_00718at 772.432 kb on - strand, within CCNA_00718at 772.447 kb on + strand, within CCNA_00718at 772.447 kb on + strand, within CCNA_00718at 772.455 kb on - strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.471 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.565 kb on + strand, within CCNA_00718

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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770,393 + CCNA_03926 0.77 +0.4
770,401 - CCNA_03926 0.83 -1.0
770,401 - CCNA_03926 0.83 +3.5
770,401 - CCNA_03926 0.83 +1.4
770,403 + CCNA_03926 0.84 -0.2
770,418 - +1.7
770,428 - +0.3
770,428 - -0.9
770,438 - -0.4
770,458 - -1.0
770,465 - -1.0
770,484 - CCNA_00714 0.16 +0.7
770,484 - CCNA_00714 0.16 -1.0
770,499 - CCNA_00714 0.22 +0.9
770,501 + CCNA_00714 0.23 +3.2
770,507 + CCNA_00714 0.25 +0.1
770,515 - CCNA_00714 0.28 +2.9
770,526 + CCNA_00714 0.32 +1.9
770,531 + CCNA_00714 0.34 +0.0
770,531 + CCNA_00714 0.34 +0.4
770,548 + CCNA_00714 0.40 +0.9
770,569 + CCNA_00714 0.48 +0.6
770,574 + CCNA_00714 0.50 +0.6
770,574 + CCNA_00714 0.50 -1.6
770,574 + CCNA_00714 0.50 +1.9
770,574 + CCNA_00714 0.50 +1.4
770,574 + CCNA_00714 0.50 -0.4
770,574 + CCNA_00714 0.50 -0.2
770,574 + CCNA_00714 0.50 +0.1
770,574 + CCNA_00714 0.50 +2.9
770,574 + CCNA_00714 0.50 +0.3
770,582 - CCNA_00714 0.53 +1.1
770,582 - CCNA_00714 0.53 +0.8
770,582 - CCNA_00714 0.53 +0.8
770,582 - CCNA_00714 0.53 +0.6
770,582 - CCNA_00714 0.53 -1.2
770,582 - CCNA_00714 0.53 -0.2
770,582 - CCNA_00714 0.53 -0.2
770,582 - CCNA_00714 0.53 +1.4
770,582 - CCNA_00714 0.53 +0.1
770,582 - CCNA_00714 0.53 +0.6
770,582 - CCNA_00714 0.53 +2.9
770,582 - CCNA_00714 0.53 -1.0
770,582 - CCNA_00714 0.53 +0.6
770,582 - CCNA_00714 0.53 -1.9
770,582 - CCNA_00714 0.53 -0.2
770,582 - CCNA_00714 0.53 -1.7
770,588 - CCNA_00714 0.55 +2.1
770,603 + CCNA_00714 0.60 -0.6
770,608 + CCNA_00714 0.62 +0.1
770,619 + CCNA_00714 0.66 -2.0
770,624 + CCNA_00714 0.68 -0.2
770,627 - CCNA_00714 0.69 -0.3
770,627 - CCNA_00714 0.69 +0.4
770,627 - CCNA_00714 0.69 -3.1
770,627 - CCNA_00714 0.69 -2.2
770,629 + CCNA_00714 0.70 -1.8
770,632 - CCNA_00714 0.71 -1.3
770,638 + CCNA_00714 0.73 -0.1
770,638 + CCNA_00714 0.73 +0.1
770,654 - CCNA_00714 0.79 -1.5
770,682 - CCNA_00714 0.90 +0.6
770,698 + +0.4
770,709 + -0.2
770,768 + -0.5
770,789 + +1.4
770,794 + +2.9
770,833 + CCNA_03927 0.12 -0.1
770,833 + CCNA_03927 0.12 -1.0
770,993 - CCNA_03927 0.66 -0.1
771,000 - CCNA_03927 0.68 +1.4
771,024 - CCNA_03927 0.76 +1.4
771,031 - CCNA_03927 0.78 -0.9
771,033 + CCNA_03927 0.79 +1.9
771,041 - CCNA_03927 0.82 -0.9
771,109 + +0.3
771,109 + -0.7
771,114 + -0.9
771,133 + +0.3
771,133 + +0.8
771,135 + -0.4
771,135 + +0.9
771,143 - -2.5
771,176 + CCNA_03928 0.21 +2.9
771,181 + CCNA_03928 0.23 -0.9
771,184 - CCNA_03928 0.25 -3.2
771,189 - CCNA_03928 0.28 -0.1
771,194 + CCNA_03928 0.30 -2.1
771,213 - CCNA_03928 0.40 +0.5
771,213 - CCNA_03928 0.40 +0.2
771,213 - CCNA_03928 0.40 +0.6
771,232 - CCNA_03928 0.50 +2.3
771,232 - CCNA_03928 0.50 -2.7
771,232 - CCNA_03928 0.50 -2.2
771,232 - CCNA_03928 0.50 +0.3
771,239 + CCNA_03928 0.54 +0.6
771,259 + CCNA_03928 0.64 +0.6
771,260 + CCNA_03928 0.65 +0.6
771,260 + CCNA_03928 0.65 +0.6
771,273 - CCNA_03928 0.71 +1.2
771,277 - CCNA_03928 0.73 +1.5
771,277 - CCNA_03928 0.73 +0.1
771,277 - CCNA_03928 0.73 -0.5
771,306 + CCNA_03928 0.89 +1.4
771,316 + -0.5
771,336 + -1.2
771,344 - +0.0
771,344 - +1.0
771,373 + +0.6
771,378 + +1.9
771,378 + -0.4
771,381 - +0.6
771,381 - -0.5
771,386 - +1.5
771,396 - -0.1
771,397 - -0.2
771,406 - +0.4
771,406 - -1.1
771,427 + CCNA_00716 0.20 +0.1
771,428 + CCNA_00716 0.21 -0.5
771,431 - CCNA_00716 0.23 -0.8
771,448 - CCNA_00716 0.32 +2.0
771,449 + CCNA_00716 0.33 +2.9
771,449 + CCNA_00716 0.33 +3.4
771,457 - CCNA_00716 0.37 +0.3
771,457 - CCNA_00716 0.37 +0.6
771,475 + CCNA_00716 0.47 -0.5
771,475 + CCNA_00716 0.47 -0.5
771,540 - CCNA_00716 0.84 +0.7
771,560 - +1.1
771,564 + -0.1
771,653 + -1.3
771,653 + +0.0
771,653 + -0.7
771,653 + -0.2
771,661 - -0.1
771,682 + +0.7
771,683 + +1.9
771,696 - -0.8
771,696 - +1.9
771,719 + -1.2
771,719 + +0.9
771,719 + +0.9
771,727 - -1.6
771,727 - +1.3
771,727 - +0.9
771,727 - +0.4
771,732 - -0.6
771,773 - CCNA_03929 0.46 -0.8
771,806 + CCNA_03929 0.75 -1.4
771,810 - CCNA_03929 0.78 +0.3
771,840 - -0.4
771,852 + -0.5
771,869 - +0.5
771,875 + -0.5
771,886 + +0.9
771,893 - +0.0
771,893 - +0.5
771,901 - +0.6
771,913 + -0.4
771,921 - -1.4
771,940 - -1.6
771,962 - +1.7
771,962 - +0.3
771,963 - +1.3
771,976 + -0.2
771,984 - CCNA_00718 0.11 -0.5
771,984 - CCNA_00718 0.11 +2.7
771,984 - CCNA_00718 0.11 +0.6
772,005 + CCNA_00718 0.13 +2.9
772,005 + CCNA_00718 0.13 -1.8
772,005 + CCNA_00718 0.13 +0.3
772,005 + CCNA_00718 0.13 -1.5
772,005 + CCNA_00718 0.13 -0.8
772,005 + CCNA_00718 0.13 +1.9
772,007 + CCNA_00718 0.13 -0.1
772,013 - CCNA_00718 0.14 -0.1
772,013 - CCNA_00718 0.14 -0.6
772,013 - CCNA_00718 0.14 -0.8
772,013 - CCNA_00718 0.14 -1.7
772,013 - CCNA_00718 0.14 -0.6
772,013 - CCNA_00718 0.14 -0.4
772,013 - CCNA_00718 0.14 +0.3
772,013 - CCNA_00718 0.14 -0.5
772,020 - CCNA_00718 0.15 +0.5
772,066 + CCNA_00718 0.20 +1.6
772,100 + CCNA_00718 0.24 +0.3
772,107 - CCNA_00718 0.25 -1.8
772,115 + CCNA_00718 0.25 +1.3
772,130 + CCNA_00718 0.27 +0.3
772,130 + CCNA_00718 0.27 +0.8
772,130 + CCNA_00718 0.27 +0.1
772,130 + CCNA_00718 0.27 -0.2
772,169 - CCNA_00718 0.31 -0.3
772,212 + CCNA_00718 0.36 +1.3
772,218 - CCNA_00718 0.37 +0.3
772,218 - CCNA_00718 0.37 -1.7
772,218 - CCNA_00718 0.37 +0.3
772,229 + CCNA_00718 0.38 -0.1
772,285 + CCNA_00718 0.44 -1.3
772,341 - CCNA_00718 0.51 +0.5
772,355 - CCNA_00718 0.52 -0.2
772,355 - CCNA_00718 0.52 +1.1
772,356 + CCNA_00718 0.52 +0.9
772,358 + CCNA_00718 0.53 -1.2
772,366 + CCNA_00718 0.53 -0.9
772,389 - CCNA_00718 0.56 +0.3
772,389 - CCNA_00718 0.56 -1.2
772,389 - CCNA_00718 0.56 +0.6
772,390 - CCNA_00718 0.56 -0.2
772,432 - CCNA_00718 0.61 +1.1
772,432 - CCNA_00718 0.61 +0.9
772,432 - CCNA_00718 0.61 +0.9
772,447 + CCNA_00718 0.62 +0.1
772,447 + CCNA_00718 0.62 -0.4
772,455 - CCNA_00718 0.63 +1.3
772,468 + CCNA_00718 0.65 +1.9
772,468 + CCNA_00718 0.65 +0.9
772,468 + CCNA_00718 0.65 +0.3
772,468 + CCNA_00718 0.65 +1.3
772,468 + CCNA_00718 0.65 -1.3
772,468 + CCNA_00718 0.65 -0.5
772,468 + CCNA_00718 0.65 -0.7
772,471 - CCNA_00718 0.65 +0.9
772,476 - CCNA_00718 0.66 -0.1
772,476 - CCNA_00718 0.66 -0.5
772,476 - CCNA_00718 0.66 +1.3
772,476 - CCNA_00718 0.66 +1.0
772,476 - CCNA_00718 0.66 -0.9
772,476 - CCNA_00718 0.66 -1.9
772,476 - CCNA_00718 0.66 -0.0
772,476 - CCNA_00718 0.66 +0.8
772,565 + CCNA_00718 0.76 -1.2

Or see this region's nucleotide sequence