Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00698 and CCNA_00699 are separated by 265 nucleotides CCNA_00699 and CCNA_00700 are separated by 718 nucleotides
CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815
_00698
CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380
_00699
CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024
_00700
Position (kb) 758
759 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 757.091 kb on + strand at 757.092 kb on - strand at 757.148 kb on - strand at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.384 kb on - strand, within CCNA_00698 at 757.403 kb on + strand, within CCNA_00698 at 757.437 kb on - strand, within CCNA_00698 at 757.442 kb on + strand, within CCNA_00698 at 757.449 kb on + strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.476 kb on + strand, within CCNA_00698 at 757.515 kb on - strand, within CCNA_00698 at 757.516 kb on + strand, within CCNA_00698 at 757.524 kb on - strand, within CCNA_00698 at 757.527 kb on + strand, within CCNA_00698 at 757.552 kb on - strand, within CCNA_00698 at 757.566 kb on - strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.579 kb on - strand, within CCNA_00698 at 757.587 kb on - strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.626 kb on + strand, within CCNA_00698 at 757.645 kb on + strand, within CCNA_00698 at 757.653 kb on - strand at 757.663 kb on + strand, within CCNA_00698 at 757.724 kb on + strand, within CCNA_00698 at 757.732 kb on - strand, within CCNA_00698 at 757.736 kb on + strand, within CCNA_00698 at 757.746 kb on + strand, within CCNA_00698 at 757.754 kb on - strand at 757.780 kb on + strand at 757.780 kb on + strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.826 kb on + strand at 757.830 kb on - strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.838 kb on + strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.846 kb on - strand at 757.866 kb on + strand at 757.875 kb on - strand at 757.885 kb on - strand at 757.889 kb on - strand at 757.923 kb on + strand at 757.932 kb on - strand at 757.932 kb on - strand at 757.937 kb on - strand at 757.939 kb on + strand at 757.947 kb on - strand at 758.341 kb on + strand, within CCNA_00699 at 758.341 kb on + strand, within CCNA_00699 at 758.353 kb on + strand at 758.353 kb on + strand at 758.375 kb on + strand at 758.525 kb on + strand at 758.541 kb on - strand at 758.541 kb on - strand at 758.567 kb on - strand at 758.601 kb on - strand at 759.060 kb on + strand at 759.067 kb on + strand at 759.067 kb on + strand at 759.067 kb on + strand at 759.085 kb on - strand at 759.085 kb on - strand at 759.112 kb on + strand at 759.147 kb on + strand at 759.202 kb on - strand at 759.203 kb on + strand at 759.236 kb on + strand at 759.249 kb on + strand at 759.289 kb on - strand at 759.291 kb on - strand at 759.292 kb on + strand, within CCNA_00700 at 759.300 kb on - strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.344 kb on + strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 757,091 + -1.5 757,092 - +0.8 757,148 - +1.3 757,376 + CCNA_00698 0.12 -0.8 757,376 + CCNA_00698 0.12 -0.4 757,376 + CCNA_00698 0.12 -0.9 757,376 + CCNA_00698 0.12 +0.9 757,384 - CCNA_00698 0.13 -1.1 757,403 + CCNA_00698 0.17 -1.6 757,437 - CCNA_00698 0.24 +0.9 757,442 + CCNA_00698 0.25 +0.1 757,449 + CCNA_00698 0.26 +1.9 757,467 - CCNA_00698 0.30 -1.2 757,467 - CCNA_00698 0.30 -2.0 757,476 + CCNA_00698 0.32 +1.3 757,515 - CCNA_00698 0.40 +0.0 757,516 + CCNA_00698 0.40 -0.4 757,524 - CCNA_00698 0.41 -1.3 757,527 + CCNA_00698 0.42 -1.1 757,552 - CCNA_00698 0.47 -1.7 757,566 - CCNA_00698 0.50 -0.5 757,571 + CCNA_00698 0.51 +1.3 757,571 + CCNA_00698 0.51 -2.7 757,579 - CCNA_00698 0.52 +1.9 757,587 - CCNA_00698 0.54 -0.1 757,596 + CCNA_00698 0.56 +1.3 757,596 + CCNA_00698 0.56 +1.1 757,626 + CCNA_00698 0.62 +2.9 757,645 + CCNA_00698 0.66 -0.4 757,653 - +3.9 757,663 + CCNA_00698 0.69 -0.2 757,724 + CCNA_00698 0.82 -0.8 757,732 - CCNA_00698 0.83 -0.2 757,736 + CCNA_00698 0.84 +2.9 757,746 + CCNA_00698 0.86 +1.3 757,754 - +1.3 757,780 + +2.3 757,780 + +0.6 757,788 - +3.5 757,788 - -0.4 757,788 - -0.4 757,788 - -0.4 757,788 - -1.0 757,788 - -1.3 757,788 - -0.2 757,788 - -0.2 757,788 - +1.9 757,826 + +0.1 757,830 - +1.2 757,838 + -2.1 757,838 + +0.3 757,838 + +0.9 757,838 + +0.7 757,838 + -1.5 757,838 + +1.9 757,846 - +1.9 757,846 - -1.7 757,846 - +1.8 757,866 + -1.1 757,875 - -0.7 757,885 - -0.5 757,889 - -0.2 757,923 + +0.3 757,932 - +0.3 757,932 - -0.2 757,937 - -0.7 757,939 + +1.3 757,947 - +0.6 758,341 + CCNA_00699 0.87 +4.5 758,341 + CCNA_00699 0.87 +4.2 758,353 + +1.7 758,353 + +4.0 758,375 + +4.7 758,525 + +1.6 758,541 - -0.5 758,541 - +5.5 758,567 - +0.6 758,601 - +1.5 759,060 + +1.9 759,067 + -1.5 759,067 + +0.6 759,067 + +1.0 759,085 - -1.3 759,085 - -0.1 759,112 + +0.9 759,147 + +4.3 759,202 - -0.7 759,203 + +1.0 759,236 + +0.9 759,249 + -1.4 759,289 - +1.4 759,291 - +0.1 759,292 + CCNA_00700 0.10 +1.8 759,300 - CCNA_00700 0.10 +2.9 759,339 + CCNA_00700 0.12 -0.1 759,339 + CCNA_00700 0.12 +1.0 759,339 + CCNA_00700 0.12 -1.9 759,339 + CCNA_00700 0.12 -0.3 759,339 + CCNA_00700 0.12 +0.7 759,339 + CCNA_00700 0.12 +2.3 759,339 + CCNA_00700 0.12 +0.7 759,339 + CCNA_00700 0.12 -0.8 759,339 + CCNA_00700 0.12 -0.5 759,339 + CCNA_00700 0.12 +1.2 759,339 + CCNA_00700 0.12 +1.1 759,339 + CCNA_00700 0.12 +1.7 759,339 + CCNA_00700 0.12 -0.6 759,339 + CCNA_00700 0.12 +2.9 759,339 + CCNA_00700 0.12 +1.1 759,339 + CCNA_00700 0.12 -0.5 759,344 + CCNA_00700 0.13 -1.2 759,347 - CCNA_00700 0.13 -1.4 759,347 - CCNA_00700 0.13 +0.9 759,347 - CCNA_00700 0.13 +0.2 759,347 - CCNA_00700 0.13 -1.1 759,347 - CCNA_00700 0.13 -1.6 759,347 - CCNA_00700 0.13 +0.3 759,347 - CCNA_00700 0.13 +0.3
Or see this region's nucleotide sequence