Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00512

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00510 and CCNA_00511 overlap by 1 nucleotidesCCNA_00511 and CCNA_00512 are separated by 64 nucleotidesCCNA_00512 and CCNA_03885 are separated by 238 nucleotides CCNA_00510: CCNA_00510 - carboxymethylenebutenolidase, at 524,523 to 525,200 _00510 CCNA_00511: CCNA_00511 - carboxymethylenebutenolidase, at 525,200 to 525,880 _00511 CCNA_00512: CCNA_00512 - GTP-binding protein, probable translation factor, at 525,945 to 527,045 _00512 CCNA_03885: CCNA_03885 - Abi superfamily/CAAX amino terminal protease, at 527,284 to 527,934 _03885 Position (kb) 525 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 524.979 kb on - strand, within CCNA_00510at 525.026 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.034 kb on + strand, within CCNA_00510at 525.034 kb on + strand, within CCNA_00510at 525.039 kb on + strand, within CCNA_00510at 525.039 kb on + strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.047 kb on + strand, within CCNA_00510at 525.053 kb on + strand, within CCNA_00510at 525.066 kb on - strand, within CCNA_00510at 525.087 kb on + strand, within CCNA_00510at 525.117 kb on + strand, within CCNA_00510at 525.120 kb on - strand, within CCNA_00510at 525.148 kb on - strandat 525.148 kb on - strandat 525.159 kb on + strandat 525.227 kb on - strandat 525.250 kb on + strandat 525.265 kb on + strandat 525.317 kb on + strand, within CCNA_00511at 525.330 kb on + strand, within CCNA_00511at 525.331 kb on + strand, within CCNA_00511at 525.357 kb on + strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.367 kb on + strand, within CCNA_00511at 525.408 kb on - strand, within CCNA_00511at 525.437 kb on - strand, within CCNA_00511at 525.449 kb on - strand, within CCNA_00511at 525.472 kb on - strand, within CCNA_00511at 525.499 kb on - strand, within CCNA_00511at 525.508 kb on + strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.559 kb on - strand, within CCNA_00511at 525.578 kb on + strand, within CCNA_00511at 525.578 kb on + strand, within CCNA_00511at 525.586 kb on - strand, within CCNA_00511at 525.587 kb on - strand, within CCNA_00511at 525.604 kb on - strand, within CCNA_00511at 525.619 kb on + strand, within CCNA_00511at 525.625 kb on + strand, within CCNA_00511at 525.669 kb on - strand, within CCNA_00511at 525.686 kb on + strand, within CCNA_00511at 525.694 kb on - strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.736 kb on - strand, within CCNA_00511at 525.736 kb on - strand, within CCNA_00511at 525.752 kb on + strand, within CCNA_00511at 525.760 kb on - strand, within CCNA_00511at 525.761 kb on - strand, within CCNA_00511at 525.795 kb on + strand, within CCNA_00511at 525.815 kb on - strandat 525.862 kb on + strandat 525.870 kb on - strandat 525.872 kb on - strandat 525.882 kb on + strandat 525.917 kb on - strandat 525.973 kb on - strandat 525.996 kb on - strandat 526.049 kb on + strandat 526.094 kb on - strand, within CCNA_00512at 526.094 kb on - strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.236 kb on + strand, within CCNA_00512at 526.244 kb on - strand, within CCNA_00512at 526.254 kb on - strand, within CCNA_00512at 526.277 kb on - strand, within CCNA_00512at 526.301 kb on - strand, within CCNA_00512at 526.339 kb on + strand, within CCNA_00512at 526.339 kb on + strand, within CCNA_00512at 526.369 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.472 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.478 kb on - strand, within CCNA_00512at 526.479 kb on - strand, within CCNA_00512at 526.519 kb on + strand, within CCNA_00512at 526.519 kb on + strand, within CCNA_00512at 526.558 kb on + strand, within CCNA_00512at 526.564 kb on + strand, within CCNA_00512at 526.635 kb on - strand, within CCNA_00512at 526.637 kb on - strand, within CCNA_00512at 526.788 kb on + strand, within CCNA_00512at 526.790 kb on - strand, within CCNA_00512at 526.812 kb on + strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512at 526.926 kb on + strand, within CCNA_00512at 526.934 kb on - strand, within CCNA_00512at 526.950 kb on - strandat 526.976 kb on + strandat 526.980 kb on - strandat 526.984 kb on + strandat 526.992 kb on - strandat 526.992 kb on - strandat 526.992 kb on - strandat 526.994 kb on + strandat 526.994 kb on + strandat 526.994 kb on + strandat 527.008 kb on + strandat 527.016 kb on - strandat 527.088 kb on + strandat 527.114 kb on + strandat 527.134 kb on + strandat 527.134 kb on + strandat 527.139 kb on + strandat 527.140 kb on - strandat 527.140 kb on - strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.145 kb on + strandat 527.168 kb on + strandat 527.168 kb on + strandat 527.168 kb on + strandat 527.193 kb on - strandat 527.226 kb on + strandat 527.231 kb on + strandat 527.239 kb on - strandat 527.239 kb on - strandat 527.239 kb on - strandat 527.244 kb on - strandat 527.272 kb on + strandat 527.280 kb on - strandat 527.321 kb on - strandat 527.326 kb on - strandat 527.362 kb on + strand, within CCNA_03885at 527.362 kb on + strand, within CCNA_03885at 527.362 kb on + strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.431 kb on + strand, within CCNA_03885at 527.444 kb on + strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.502 kb on - strand, within CCNA_03885at 527.549 kb on - strand, within CCNA_03885at 527.622 kb on + strand, within CCNA_03885at 527.629 kb on - strand, within CCNA_03885at 527.638 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.740 kb on + strand, within CCNA_03885at 527.812 kb on + strand, within CCNA_03885at 527.815 kb on - strand, within CCNA_03885at 527.830 kb on - strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.845 kb on + strand, within CCNA_03885at 527.852 kb on - strand, within CCNA_03885at 527.858 kb on - strand, within CCNA_03885at 527.898 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.908 kb on + strandat 527.908 kb on + strandat 527.973 kb on - strandat 527.978 kb on - strandat 527.984 kb on - strandat 528.003 kb on + strandat 528.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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524,979 - CCNA_00510 0.67 +2.5
525,026 + CCNA_00510 0.74 +0.1
525,032 + CCNA_00510 0.75 +0.7
525,034 + CCNA_00510 0.75 +0.7
525,034 + CCNA_00510 0.75 -0.2
525,039 + CCNA_00510 0.76 -2.0
525,039 + CCNA_00510 0.76 -1.0
525,042 - CCNA_00510 0.77 -1.8
525,042 - CCNA_00510 0.77 -1.4
525,047 + CCNA_00510 0.77 +0.1
525,053 + CCNA_00510 0.78 -2.2
525,066 - CCNA_00510 0.80 +1.3
525,087 + CCNA_00510 0.83 -0.8
525,117 + CCNA_00510 0.88 +2.0
525,120 - CCNA_00510 0.88 +1.0
525,148 - +1.2
525,148 - -1.0
525,159 + -1.8
525,227 - +3.1
525,250 + +0.1
525,265 + +0.7
525,317 + CCNA_00511 0.17 +0.2
525,330 + CCNA_00511 0.19 -2.3
525,331 + CCNA_00511 0.19 +1.0
525,357 + CCNA_00511 0.23 -1.3
525,365 - CCNA_00511 0.24 +3.7
525,365 - CCNA_00511 0.24 -1.5
525,367 + CCNA_00511 0.25 +4.0
525,408 - CCNA_00511 0.31 +0.4
525,437 - CCNA_00511 0.35 -0.3
525,449 - CCNA_00511 0.37 +0.2
525,472 - CCNA_00511 0.40 +1.0
525,499 - CCNA_00511 0.44 +0.2
525,508 + CCNA_00511 0.45 -1.2
525,517 - CCNA_00511 0.47 -1.3
525,517 - CCNA_00511 0.47 +1.0
525,559 - CCNA_00511 0.53 -2.2
525,578 + CCNA_00511 0.56 -0.0
525,578 + CCNA_00511 0.56 -1.1
525,586 - CCNA_00511 0.57 -1.2
525,587 - CCNA_00511 0.57 +0.8
525,604 - CCNA_00511 0.59 -0.4
525,619 + CCNA_00511 0.62 -0.1
525,625 + CCNA_00511 0.62 -0.3
525,669 - CCNA_00511 0.69 -1.7
525,686 + CCNA_00511 0.71 -0.1
525,694 - CCNA_00511 0.73 -0.3
525,709 + CCNA_00511 0.75 -2.4
525,709 + CCNA_00511 0.75 +0.6
525,709 + CCNA_00511 0.75 -1.4
525,709 + CCNA_00511 0.75 -1.9
525,709 + CCNA_00511 0.75 +0.9
525,709 + CCNA_00511 0.75 +1.1
525,709 + CCNA_00511 0.75 -0.6
525,717 - CCNA_00511 0.76 +1.1
525,717 - CCNA_00511 0.76 -1.6
525,717 - CCNA_00511 0.76 +1.8
525,717 - CCNA_00511 0.76 -0.6
525,717 - CCNA_00511 0.76 -0.9
525,717 - CCNA_00511 0.76 +1.3
525,736 - CCNA_00511 0.79 -0.5
525,736 - CCNA_00511 0.79 -0.8
525,752 + CCNA_00511 0.81 +0.7
525,760 - CCNA_00511 0.82 -0.3
525,761 - CCNA_00511 0.82 -1.6
525,795 + CCNA_00511 0.87 +0.2
525,815 - +1.7
525,862 + -0.2
525,870 - +0.1
525,872 - +0.4
525,882 + -1.1
525,917 - +1.0
525,973 - -1.0
525,996 - -0.8
526,049 + -0.8
526,094 - CCNA_00512 0.14 -1.0
526,094 - CCNA_00512 0.14 +1.1
526,212 + CCNA_00512 0.24 +0.4
526,212 + CCNA_00512 0.24 +0.4
526,236 + CCNA_00512 0.26 +0.1
526,244 - CCNA_00512 0.27 +0.4
526,254 - CCNA_00512 0.28 -2.7
526,277 - CCNA_00512 0.30 -2.1
526,301 - CCNA_00512 0.32 +0.1
526,339 + CCNA_00512 0.36 +0.1
526,339 + CCNA_00512 0.36 -0.1
526,369 + CCNA_00512 0.39 +0.7
526,465 + CCNA_00512 0.47 +0.7
526,465 + CCNA_00512 0.47 -0.5
526,472 - CCNA_00512 0.48 -3.0
526,473 - CCNA_00512 0.48 +0.4
526,473 - CCNA_00512 0.48 -0.3
526,473 - CCNA_00512 0.48 -1.9
526,478 - CCNA_00512 0.48 -0.8
526,479 - CCNA_00512 0.49 +2.7
526,519 + CCNA_00512 0.52 -1.6
526,519 + CCNA_00512 0.52 -0.3
526,558 + CCNA_00512 0.56 +0.1
526,564 + CCNA_00512 0.56 +1.1
526,635 - CCNA_00512 0.63 -0.6
526,637 - CCNA_00512 0.63 -0.4
526,788 + CCNA_00512 0.77 +1.1
526,790 - CCNA_00512 0.77 -0.9
526,812 + CCNA_00512 0.79 +0.1
526,873 + CCNA_00512 0.84 +1.1
526,926 + CCNA_00512 0.89 -0.8
526,934 - CCNA_00512 0.90 -1.4
526,950 - -0.3
526,976 + -0.8
526,980 - +1.4
526,984 + +1.7
526,992 - -1.1
526,992 - -0.6
526,992 - +0.1
526,994 + +1.1
526,994 + +1.7
526,994 + -0.5
527,008 + -1.9
527,016 - -0.8
527,088 + -0.4
527,114 + -0.8
527,134 + -0.6
527,134 + +2.7
527,139 + +0.4
527,140 - +0.5
527,140 - -0.3
527,142 - -1.8
527,142 - -1.2
527,142 - +1.7
527,145 + -0.8
527,168 + -1.2
527,168 + +0.4
527,168 + -0.6
527,193 - -0.3
527,226 + +2.2
527,231 + -0.0
527,239 - +1.7
527,239 - -0.4
527,239 - +1.1
527,244 - -0.5
527,272 + -1.2
527,280 - -1.3
527,321 - -0.6
527,326 - -0.8
527,362 + CCNA_03885 0.12 -0.6
527,362 + CCNA_03885 0.12 +1.7
527,362 + CCNA_03885 0.12 -1.0
527,372 + CCNA_03885 0.14 +0.7
527,372 + CCNA_03885 0.14 -0.4
527,431 + CCNA_03885 0.23 -0.6
527,444 + CCNA_03885 0.25 -2.1
527,467 - CCNA_03885 0.28 +2.7
527,467 - CCNA_03885 0.28 -0.3
527,494 + CCNA_03885 0.32 -1.0
527,494 + CCNA_03885 0.32 -0.8
527,502 - CCNA_03885 0.33 -0.3
527,549 - CCNA_03885 0.41 +0.4
527,622 + CCNA_03885 0.52 +2.0
527,629 - CCNA_03885 0.53 -0.3
527,638 + CCNA_03885 0.54 -1.8
527,645 + CCNA_03885 0.55 +4.1
527,645 + CCNA_03885 0.55 +3.4
527,709 - CCNA_03885 0.65 -0.6
527,709 - CCNA_03885 0.65 -1.0
527,740 + CCNA_03885 0.70 +0.7
527,812 + CCNA_03885 0.81 -0.1
527,815 - CCNA_03885 0.82 -1.2
527,830 - CCNA_03885 0.84 +0.1
527,844 + CCNA_03885 0.86 -1.6
527,844 + CCNA_03885 0.86 -1.1
527,845 + CCNA_03885 0.86 +2.0
527,852 - CCNA_03885 0.87 -1.0
527,858 - CCNA_03885 0.88 -2.1
527,898 + +1.7
527,900 + +0.8
527,900 + -0.5
527,900 + -0.3
527,900 + +0.9
527,900 + +0.6
527,908 + -0.3
527,908 + +2.8
527,973 - +2.1
527,978 - +0.1
527,984 - +0.5
528,003 + -1.0
528,010 - +2.7

Or see this region's nucleotide sequence