Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00499

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00497 and CCNA_00498 are separated by 60 nucleotidesCCNA_00498 and CCNA_00499 are separated by 75 nucleotidesCCNA_00499 and CCNA_00500 overlap by 4 nucleotidesCCNA_00500 and CCNA_00501 overlap by 4 nucleotides CCNA_00497: CCNA_00497 - putative rhamnosyl transferase, at 514,298 to 515,224 _00497 CCNA_00498: CCNA_00498 - hypothetical protein, at 515,285 to 515,404 _00498 CCNA_00499: CCNA_00499 - hypothetical protein, at 515,480 to 515,845 _00499 CCNA_00500: CCNA_00500 - hydroxymethylglutaryl-CoA lyase, at 515,842 to 516,741 _00500 CCNA_00501: CCNA_00501 - glucosyltransferase, at 516,738 to 518,417 _00501 Position (kb) 515 516Strain fitness (log2 ratio) -2 -1 0 1 2 3at 514.512 kb on - strand, within CCNA_00497at 514.555 kb on - strand, within CCNA_00497at 514.574 kb on - strand, within CCNA_00497at 514.608 kb on - strandat 514.617 kb on + strand, within CCNA_00497at 514.636 kb on + strand, within CCNA_00497at 514.638 kb on - strand, within CCNA_00497at 514.642 kb on - strand, within CCNA_00497at 514.644 kb on - strand, within CCNA_00497at 514.657 kb on + strand, within CCNA_00497at 514.664 kb on + strand, within CCNA_00497at 514.681 kb on - strand, within CCNA_00497at 514.706 kb on + strand, within CCNA_00497at 514.706 kb on + strand, within CCNA_00497at 514.748 kb on + strand, within CCNA_00497at 514.753 kb on + strand, within CCNA_00497at 514.756 kb on - strand, within CCNA_00497at 514.757 kb on + strand, within CCNA_00497at 514.762 kb on + strand, within CCNA_00497at 514.767 kb on + strand, within CCNA_00497at 514.770 kb on - strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.772 kb on + strand, within CCNA_00497at 514.775 kb on - strand, within CCNA_00497at 514.780 kb on - strand, within CCNA_00497at 514.780 kb on - strand, within CCNA_00497at 514.780 kb on - strand, within CCNA_00497at 514.787 kb on - strand, within CCNA_00497at 514.803 kb on + strand, within CCNA_00497at 514.803 kb on + strand, within CCNA_00497at 514.803 kb on + strand, within CCNA_00497at 514.811 kb on - strand, within CCNA_00497at 514.811 kb on - strand, within CCNA_00497at 514.813 kb on + strand, within CCNA_00497at 514.818 kb on + strand, within CCNA_00497at 514.852 kb on - strand, within CCNA_00497at 514.937 kb on - strand, within CCNA_00497at 514.980 kb on - strand, within CCNA_00497at 514.998 kb on + strand, within CCNA_00497at 515.003 kb on + strand, within CCNA_00497at 515.003 kb on + strand, within CCNA_00497at 515.008 kb on + strand, within CCNA_00497at 515.011 kb on - strand, within CCNA_00497at 515.014 kb on + strand, within CCNA_00497at 515.028 kb on - strand, within CCNA_00497at 515.039 kb on + strand, within CCNA_00497at 515.047 kb on - strand, within CCNA_00497at 515.049 kb on + strand, within CCNA_00497at 515.049 kb on + strand, within CCNA_00497at 515.057 kb on - strand, within CCNA_00497at 515.077 kb on + strand, within CCNA_00497at 515.077 kb on - strand, within CCNA_00497at 515.084 kb on + strand, within CCNA_00497at 515.085 kb on - strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.090 kb on + strand, within CCNA_00497at 515.155 kb on - strandat 515.220 kb on + strandat 515.230 kb on + strandat 515.231 kb on + strandat 515.238 kb on - strandat 515.257 kb on - strandat 515.277 kb on + strandat 515.290 kb on - strandat 515.297 kb on + strand, within CCNA_00498at 515.300 kb on - strand, within CCNA_00498at 515.349 kb on + strand, within CCNA_00498at 515.349 kb on + strand, within CCNA_00498at 515.357 kb on - strand, within CCNA_00498at 515.368 kb on + strand, within CCNA_00498at 515.374 kb on + strand, within CCNA_00498at 515.382 kb on - strand, within CCNA_00498at 515.443 kb on - strandat 515.465 kb on + strandat 515.538 kb on + strand, within CCNA_00499at 515.546 kb on - strand, within CCNA_00499at 515.565 kb on + strand, within CCNA_00499at 515.565 kb on + strand, within CCNA_00499at 515.582 kb on - strand, within CCNA_00499at 515.586 kb on + strand, within CCNA_00499at 515.604 kb on + strand, within CCNA_00499at 515.640 kb on - strand, within CCNA_00499at 515.642 kb on + strand, within CCNA_00499at 515.642 kb on + strand, within CCNA_00499at 515.642 kb on + strand, within CCNA_00499at 515.689 kb on - strand, within CCNA_00499at 515.713 kb on + strand, within CCNA_00499at 515.713 kb on + strand, within CCNA_00499at 515.721 kb on - strand, within CCNA_00499at 515.767 kb on + strand, within CCNA_00499at 515.820 kb on - strandat 515.846 kb on - strandat 516.744 kb on - strandat 516.744 kb on - strandat 516.744 kb on - strandat 516.748 kb on + strandat 516.768 kb on - strandat 516.820 kb on - strandat 516.821 kb on - strandat 516.821 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
remove
514,512 - CCNA_00497 0.23 -0.5
514,555 - CCNA_00497 0.28 -0.3
514,574 - CCNA_00497 0.30 +0.1
514,608 - +2.7
514,617 + CCNA_00497 0.34 +3.7
514,636 + CCNA_00497 0.36 +1.3
514,638 - CCNA_00497 0.37 +0.7
514,642 - CCNA_00497 0.37 -1.6
514,644 - CCNA_00497 0.37 -0.5
514,657 + CCNA_00497 0.39 +1.2
514,664 + CCNA_00497 0.39 +1.8
514,681 - CCNA_00497 0.41 -0.3
514,706 + CCNA_00497 0.44 +1.4
514,706 + CCNA_00497 0.44 +1.7
514,748 + CCNA_00497 0.49 +1.3
514,753 + CCNA_00497 0.49 +1.2
514,756 - CCNA_00497 0.49 -1.1
514,757 + CCNA_00497 0.50 +1.0
514,762 + CCNA_00497 0.50 +1.8
514,767 + CCNA_00497 0.51 +1.1
514,770 - CCNA_00497 0.51 +1.1
514,772 + CCNA_00497 0.51 +1.6
514,772 + CCNA_00497 0.51 +1.4
514,772 + CCNA_00497 0.51 +1.2
514,772 + CCNA_00497 0.51 +1.7
514,775 - CCNA_00497 0.51 -1.4
514,780 - CCNA_00497 0.52 -0.2
514,780 - CCNA_00497 0.52 -1.5
514,780 - CCNA_00497 0.52 +0.1
514,787 - CCNA_00497 0.53 -0.7
514,803 + CCNA_00497 0.54 +1.9
514,803 + CCNA_00497 0.54 +2.3
514,803 + CCNA_00497 0.54 +2.3
514,811 - CCNA_00497 0.55 -0.9
514,811 - CCNA_00497 0.55 +2.7
514,813 + CCNA_00497 0.56 +1.4
514,818 + CCNA_00497 0.56 +1.6
514,852 - CCNA_00497 0.60 -2.1
514,937 - CCNA_00497 0.69 -1.0
514,980 - CCNA_00497 0.74 -0.5
514,998 + CCNA_00497 0.76 +1.2
515,003 + CCNA_00497 0.76 +2.8
515,003 + CCNA_00497 0.76 +1.7
515,008 + CCNA_00497 0.77 +3.1
515,011 - CCNA_00497 0.77 -0.3
515,014 + CCNA_00497 0.77 +2.2
515,028 - CCNA_00497 0.79 +0.3
515,039 + CCNA_00497 0.80 +2.1
515,047 - CCNA_00497 0.81 -1.9
515,049 + CCNA_00497 0.81 +1.2
515,049 + CCNA_00497 0.81 +0.8
515,057 - CCNA_00497 0.82 +0.3
515,077 + CCNA_00497 0.84 +1.8
515,077 - CCNA_00497 0.84 +0.3
515,084 + CCNA_00497 0.85 +1.4
515,085 - CCNA_00497 0.85 -0.1
515,090 + CCNA_00497 0.85 +1.2
515,090 + CCNA_00497 0.85 +1.1
515,090 + CCNA_00497 0.85 +1.9
515,155 - -0.7
515,220 + +3.3
515,230 + +1.8
515,231 + +1.9
515,238 - +2.3
515,257 - +2.7
515,277 + +2.7
515,290 - +0.6
515,297 + CCNA_00498 0.10 +3.7
515,300 - CCNA_00498 0.12 -0.8
515,349 + CCNA_00498 0.53 -0.8
515,349 + CCNA_00498 0.53 +0.1
515,357 - CCNA_00498 0.60 +0.7
515,368 + CCNA_00498 0.69 +1.1
515,374 + CCNA_00498 0.74 +0.7
515,382 - CCNA_00498 0.81 +2.7
515,443 - -0.1
515,465 + -0.1
515,538 + CCNA_00499 0.16 +3.3
515,546 - CCNA_00499 0.18 -1.5
515,565 + CCNA_00499 0.23 +1.6
515,565 + CCNA_00499 0.23 +0.1
515,582 - CCNA_00499 0.28 +0.9
515,586 + CCNA_00499 0.29 +0.7
515,604 + CCNA_00499 0.34 +1.7
515,640 - CCNA_00499 0.44 +0.1
515,642 + CCNA_00499 0.44 -0.5
515,642 + CCNA_00499 0.44 -0.1
515,642 + CCNA_00499 0.44 -0.4
515,689 - CCNA_00499 0.57 +2.5
515,713 + CCNA_00499 0.64 +1.8
515,713 + CCNA_00499 0.64 -0.3
515,721 - CCNA_00499 0.66 +0.5
515,767 + CCNA_00499 0.78 -0.3
515,820 - +0.9
515,846 - -0.1
516,744 - +0.6
516,744 - +0.4
516,744 - -0.2
516,748 + +0.0
516,768 - +0.5
516,820 - +0.1
516,821 - +0.3
516,821 - +0.3

Or see this region's nucleotide sequence