Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00436 and CCNA_00437 are separated by 198 nucleotides CCNA_00437 and CCNA_00438 are separated by 211 nucleotides CCNA_00438 and CCNA_00439 are separated by 296 nucleotides
CCNA_00436: CCNA_00436 - acyl-CoA dehydrogenase, short-chain specific, at 441,717 to 442,865
_00436
CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677
_00437
CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200
_00438
CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518
_00439
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 442.076 kb on - strand, within CCNA_00436 at 442.104 kb on + strand, within CCNA_00436 at 442.112 kb on - strand, within CCNA_00436 at 442.122 kb on + strand, within CCNA_00436 at 442.137 kb on + strand, within CCNA_00436 at 442.153 kb on + strand, within CCNA_00436 at 442.158 kb on + strand, within CCNA_00436 at 442.158 kb on + strand, within CCNA_00436 at 442.168 kb on + strand, within CCNA_00436 at 442.215 kb on + strand, within CCNA_00436 at 442.216 kb on - strand, within CCNA_00436 at 442.216 kb on - strand, within CCNA_00436 at 442.256 kb on + strand, within CCNA_00436 at 442.265 kb on - strand, within CCNA_00436 at 442.267 kb on + strand, within CCNA_00436 at 442.301 kb on + strand, within CCNA_00436 at 442.323 kb on + strand, within CCNA_00436 at 442.331 kb on - strand, within CCNA_00436 at 442.340 kb on + strand, within CCNA_00436 at 442.340 kb on + strand, within CCNA_00436 at 442.389 kb on - strand, within CCNA_00436 at 442.408 kb on + strand, within CCNA_00436 at 442.408 kb on - strand, within CCNA_00436 at 442.422 kb on + strand, within CCNA_00436 at 442.428 kb on + strand, within CCNA_00436 at 442.455 kb on + strand, within CCNA_00436 at 442.470 kb on + strand, within CCNA_00436 at 442.476 kb on + strand, within CCNA_00436 at 442.488 kb on + strand, within CCNA_00436 at 442.503 kb on + strand, within CCNA_00436 at 442.554 kb on - strand, within CCNA_00436 at 442.577 kb on + strand, within CCNA_00436 at 442.613 kb on + strand, within CCNA_00436 at 442.619 kb on - strand, within CCNA_00436 at 442.669 kb on + strand, within CCNA_00436 at 442.669 kb on + strand, within CCNA_00436 at 442.669 kb on + strand, within CCNA_00436 at 442.677 kb on - strand, within CCNA_00436 at 442.677 kb on - strand, within CCNA_00436 at 442.677 kb on - strand, within CCNA_00436 at 442.712 kb on - strand, within CCNA_00436 at 442.719 kb on + strand, within CCNA_00436 at 442.719 kb on + strand, within CCNA_00436 at 442.719 kb on + strand, within CCNA_00436 at 442.719 kb on + strand, within CCNA_00436 at 442.719 kb on + strand at 442.719 kb on + strand, within CCNA_00436 at 442.719 kb on + strand, within CCNA_00436 at 442.719 kb on + strand, within CCNA_00436 at 442.727 kb on - strand, within CCNA_00436 at 442.727 kb on - strand, within CCNA_00436 at 442.727 kb on - strand, within CCNA_00436 at 442.759 kb on + strand at 442.780 kb on - strand at 442.782 kb on - strand at 442.816 kb on + strand at 442.866 kb on + strand at 442.866 kb on + strand at 442.874 kb on - strand at 442.876 kb on + strand at 442.936 kb on + strand at 442.962 kb on - strand at 442.971 kb on - strand at 443.032 kb on - strand at 443.038 kb on - strand at 443.087 kb on - strand at 443.169 kb on - strand at 443.169 kb on - strand at 443.180 kb on + strand at 443.210 kb on + strand at 443.218 kb on - strand at 443.218 kb on - strand at 443.257 kb on - strand, within CCNA_00437 at 443.305 kb on + strand, within CCNA_00437 at 443.310 kb on + strand, within CCNA_00437 at 443.310 kb on + strand, within CCNA_00437 at 443.315 kb on + strand, within CCNA_00437 at 443.315 kb on + strand, within CCNA_00437 at 443.315 kb on + strand, within CCNA_00437 at 443.318 kb on - strand, within CCNA_00437 at 443.334 kb on - strand, within CCNA_00437 at 443.348 kb on - strand, within CCNA_00437 at 443.352 kb on + strand, within CCNA_00437 at 443.360 kb on - strand, within CCNA_00437 at 443.366 kb on - strand, within CCNA_00437 at 443.367 kb on - strand, within CCNA_00437 at 443.374 kb on + strand, within CCNA_00437 at 443.374 kb on + strand, within CCNA_00437 at 443.382 kb on - strand, within CCNA_00437 at 443.382 kb on - strand, within CCNA_00437 at 443.382 kb on - strand, within CCNA_00437 at 443.382 kb on - strand, within CCNA_00437 at 443.382 kb on - strand, within CCNA_00437 at 443.426 kb on + strand, within CCNA_00437 at 443.451 kb on - strand, within CCNA_00437 at 443.453 kb on + strand, within CCNA_00437 at 443.456 kb on - strand, within CCNA_00437 at 443.461 kb on - strand, within CCNA_00437 at 443.461 kb on - strand, within CCNA_00437 at 443.468 kb on + strand, within CCNA_00437 at 443.476 kb on - strand, within CCNA_00437 at 443.487 kb on - strand, within CCNA_00437 at 443.487 kb on - strand, within CCNA_00437 at 443.493 kb on + strand, within CCNA_00437 at 443.521 kb on - strand, within CCNA_00437 at 443.540 kb on - strand, within CCNA_00437 at 443.565 kb on + strand, within CCNA_00437 at 443.588 kb on + strand, within CCNA_00437 at 443.594 kb on - strand, within CCNA_00437 at 443.596 kb on - strand, within CCNA_00437 at 443.619 kb on + strand, within CCNA_00437 at 443.627 kb on - strand, within CCNA_00437 at 443.631 kb on + strand, within CCNA_00437 at 443.632 kb on + strand, within CCNA_00437 at 443.638 kb on - strand, within CCNA_00437 at 443.648 kb on - strand, within CCNA_00437 at 443.652 kb on + strand, within CCNA_00437 at 443.660 kb on - strand, within CCNA_00437 at 443.660 kb on - strand, within CCNA_00437 at 443.702 kb on + strand, within CCNA_00437 at 443.715 kb on + strand, within CCNA_00437 at 443.723 kb on + strand, within CCNA_00437 at 443.731 kb on - strand, within CCNA_00437 at 443.731 kb on - strand, within CCNA_00437 at 443.731 kb on - strand, within CCNA_00437 at 443.734 kb on + strand, within CCNA_00437 at 443.741 kb on - strand at 443.741 kb on - strand, within CCNA_00437 at 443.814 kb on + strand, within CCNA_00437 at 443.814 kb on + strand, within CCNA_00437 at 443.814 kb on + strand, within CCNA_00437 at 443.814 kb on + strand, within CCNA_00437 at 443.827 kb on - strand, within CCNA_00437 at 443.832 kb on + strand, within CCNA_00437 at 443.864 kb on - strand, within CCNA_00437 at 443.872 kb on + strand, within CCNA_00437 at 443.880 kb on - strand, within CCNA_00437 at 443.910 kb on - strand, within CCNA_00437 at 443.924 kb on - strand, within CCNA_00437 at 443.966 kb on + strand, within CCNA_00437 at 443.980 kb on - strand, within CCNA_00437 at 443.980 kb on - strand, within CCNA_00437 at 444.031 kb on - strand, within CCNA_00437 at 444.037 kb on - strand, within CCNA_00437 at 444.069 kb on - strand, within CCNA_00437 at 444.095 kb on - strand, within CCNA_00437 at 444.097 kb on + strand, within CCNA_00437 at 444.119 kb on + strand, within CCNA_00437 at 444.127 kb on - strand, within CCNA_00437 at 444.127 kb on - strand, within CCNA_00437 at 444.138 kb on + strand, within CCNA_00437 at 444.143 kb on + strand, within CCNA_00437 at 444.168 kb on + strand, within CCNA_00437 at 444.169 kb on + strand, within CCNA_00437 at 444.218 kb on + strand, within CCNA_00437 at 444.218 kb on - strand, within CCNA_00437 at 444.226 kb on - strand, within CCNA_00437 at 444.230 kb on + strand, within CCNA_00437 at 444.238 kb on - strand, within CCNA_00437 at 444.238 kb on - strand, within CCNA_00437 at 444.238 kb on - strand, within CCNA_00437 at 444.251 kb on + strand, within CCNA_00437 at 444.264 kb on - strand, within CCNA_00437 at 444.296 kb on + strand, within CCNA_00437 at 444.368 kb on - strand, within CCNA_00437 at 444.376 kb on - strand, within CCNA_00437 at 444.376 kb on - strand, within CCNA_00437 at 444.380 kb on + strand, within CCNA_00437 at 444.383 kb on - strand, within CCNA_00437 at 444.387 kb on + strand, within CCNA_00437 at 444.388 kb on - strand, within CCNA_00437 at 444.388 kb on - strand, within CCNA_00437 at 444.411 kb on + strand, within CCNA_00437 at 444.419 kb on - strand, within CCNA_00437 at 444.420 kb on + strand, within CCNA_00437 at 444.420 kb on + strand, within CCNA_00437 at 444.420 kb on + strand, within CCNA_00437 at 444.428 kb on - strand, within CCNA_00437 at 444.494 kb on + strand, within CCNA_00437 at 444.503 kb on + strand, within CCNA_00437 at 444.511 kb on - strand, within CCNA_00437 at 444.513 kb on + strand, within CCNA_00437 at 444.520 kb on + strand at 444.530 kb on - strand at 444.541 kb on - strand at 444.686 kb on + strand at 444.694 kb on - strand at 444.708 kb on - strand at 444.708 kb on - strand at 444.710 kb on - strand at 444.715 kb on + strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.738 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.766 kb on + strand at 444.766 kb on - strand at 444.827 kb on - strand at 444.827 kb on - strand at 444.832 kb on - strand at 444.848 kb on - strand at 444.857 kb on - strand at 444.858 kb on - strand at 444.985 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.013 kb on + strand, within CCNA_00438 at 445.014 kb on - strand, within CCNA_00438 at 445.021 kb on - strand, within CCNA_00438 at 445.051 kb on - strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.083 kb on - strand, within CCNA_00438 at 445.092 kb on + strand, within CCNA_00438 at 445.108 kb on - strand, within CCNA_00438 at 445.116 kb on - strand, within CCNA_00438 at 445.141 kb on + strand, within CCNA_00438 at 445.202 kb on - strand at 445.202 kb on - strand at 445.359 kb on - strand at 445.376 kb on - strand at 445.378 kb on + strand at 445.491 kb on + strand at 445.499 kb on - strand at 445.499 kb on - strand at 445.519 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.567 kb on + strand at 445.575 kb on - strand at 445.599 kb on - strand at 445.611 kb on + strand at 445.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 442,076 - CCNA_00436 0.31 +0.5 442,104 + CCNA_00436 0.34 +0.5 442,112 - CCNA_00436 0.34 -0.9 442,122 + CCNA_00436 0.35 -0.5 442,137 + CCNA_00436 0.37 -1.7 442,153 + CCNA_00436 0.38 -0.1 442,158 + CCNA_00436 0.38 +0.7 442,158 + CCNA_00436 0.38 +0.1 442,168 + CCNA_00436 0.39 -1.6 442,215 + CCNA_00436 0.43 -1.1 442,216 - CCNA_00436 0.43 -2.6 442,216 - CCNA_00436 0.43 -1.9 442,256 + CCNA_00436 0.47 -1.0 442,265 - CCNA_00436 0.48 +1.5 442,267 + CCNA_00436 0.48 +0.8 442,301 + CCNA_00436 0.51 -0.0 442,323 + CCNA_00436 0.53 +0.1 442,331 - CCNA_00436 0.53 -0.7 442,340 + CCNA_00436 0.54 -1.1 442,340 + CCNA_00436 0.54 -0.5 442,389 - CCNA_00436 0.58 -1.5 442,408 + CCNA_00436 0.60 +3.5 442,408 - CCNA_00436 0.60 +1.9 442,422 + CCNA_00436 0.61 -0.5 442,428 + CCNA_00436 0.62 -0.5 442,455 + CCNA_00436 0.64 -3.0 442,470 + CCNA_00436 0.66 +0.3 442,476 + CCNA_00436 0.66 -0.7 442,488 + CCNA_00436 0.67 +0.5 442,503 + CCNA_00436 0.68 -0.5 442,554 - CCNA_00436 0.73 +1.5 442,577 + CCNA_00436 0.75 -1.1 442,613 + CCNA_00436 0.78 +0.3 442,619 - CCNA_00436 0.79 -1.0 442,669 + CCNA_00436 0.83 -1.5 442,669 + CCNA_00436 0.83 -0.9 442,669 + CCNA_00436 0.83 -0.6 442,677 - CCNA_00436 0.84 +0.5 442,677 - CCNA_00436 0.84 -2.3 442,677 - CCNA_00436 0.84 -2.7 442,712 - CCNA_00436 0.87 -0.5 442,719 + CCNA_00436 0.87 -0.1 442,719 + CCNA_00436 0.87 +0.1 442,719 + CCNA_00436 0.87 -0.7 442,719 + CCNA_00436 0.87 -2.1 442,719 + +2.5 442,719 + CCNA_00436 0.87 +0.9 442,719 + CCNA_00436 0.87 -0.5 442,719 + CCNA_00436 0.87 -1.2 442,727 - CCNA_00436 0.88 +1.1 442,727 - CCNA_00436 0.88 +0.5 442,727 - CCNA_00436 0.88 +0.9 442,759 + +2.5 442,780 - -2.0 442,782 - +1.5 442,816 + +0.1 442,866 + +0.3 442,866 + +1.7 442,874 - -0.1 442,876 + -1.1 442,936 + -0.1 442,962 - -1.9 442,971 - +1.5 443,032 - -0.3 443,038 - -0.3 443,087 - +0.5 443,169 - -1.6 443,169 - +1.1 443,180 + -1.3 443,210 + -1.2 443,218 - -0.3 443,218 - +0.9 443,257 - CCNA_00437 0.12 +1.5 443,305 + CCNA_00437 0.15 -0.7 443,310 + CCNA_00437 0.15 +2.5 443,310 + CCNA_00437 0.15 +0.2 443,315 + CCNA_00437 0.16 -0.3 443,315 + CCNA_00437 0.16 -2.5 443,315 + CCNA_00437 0.16 -0.7 443,318 - CCNA_00437 0.16 +3.5 443,334 - CCNA_00437 0.17 -3.3 443,348 - CCNA_00437 0.18 +0.2 443,352 + CCNA_00437 0.18 -0.8 443,360 - CCNA_00437 0.18 -2.3 443,366 - CCNA_00437 0.19 -2.1 443,367 - CCNA_00437 0.19 -0.2 443,374 + CCNA_00437 0.19 -0.5 443,374 + CCNA_00437 0.19 -0.3 443,382 - CCNA_00437 0.20 -1.2 443,382 - CCNA_00437 0.20 +0.2 443,382 - CCNA_00437 0.20 -1.4 443,382 - CCNA_00437 0.20 -0.1 443,382 - CCNA_00437 0.20 +0.6 443,426 + CCNA_00437 0.22 -0.3 443,451 - CCNA_00437 0.24 -1.2 443,453 + CCNA_00437 0.24 +0.9 443,456 - CCNA_00437 0.24 +1.5 443,461 - CCNA_00437 0.25 -0.1 443,461 - CCNA_00437 0.25 +1.3 443,468 + CCNA_00437 0.25 -3.1 443,476 - CCNA_00437 0.26 +2.5 443,487 - CCNA_00437 0.26 -0.1 443,487 - CCNA_00437 0.26 +0.2 443,493 + CCNA_00437 0.27 -2.0 443,521 - CCNA_00437 0.28 +2.5 443,540 - CCNA_00437 0.29 +2.5 443,565 + CCNA_00437 0.31 +0.6 443,588 + CCNA_00437 0.32 +0.2 443,594 - CCNA_00437 0.33 -0.3 443,596 - CCNA_00437 0.33 +0.7 443,619 + CCNA_00437 0.34 -0.7 443,627 - CCNA_00437 0.35 +0.9 443,631 + CCNA_00437 0.35 -0.3 443,632 + CCNA_00437 0.35 +2.5 443,638 - CCNA_00437 0.36 -0.1 443,648 - CCNA_00437 0.36 +0.9 443,652 + CCNA_00437 0.36 -0.3 443,660 - CCNA_00437 0.37 -1.0 443,660 - CCNA_00437 0.37 -0.1 443,702 + CCNA_00437 0.40 -0.3 443,715 + CCNA_00437 0.40 -2.8 443,723 + CCNA_00437 0.41 -1.1 443,731 - CCNA_00437 0.41 -1.3 443,731 - CCNA_00437 0.41 -0.8 443,731 - CCNA_00437 0.41 -0.1 443,734 + CCNA_00437 0.42 +0.9 443,741 - +2.5 443,741 - CCNA_00437 0.42 -0.1 443,814 + CCNA_00437 0.46 -0.7 443,814 + CCNA_00437 0.46 -1.8 443,814 + CCNA_00437 0.46 +2.8 443,814 + CCNA_00437 0.46 +0.5 443,827 - CCNA_00437 0.47 -1.8 443,832 + CCNA_00437 0.48 -1.3 443,864 - CCNA_00437 0.50 -0.1 443,872 + CCNA_00437 0.50 +0.9 443,880 - CCNA_00437 0.51 -1.5 443,910 - CCNA_00437 0.52 +0.9 443,924 - CCNA_00437 0.53 -0.1 443,966 + CCNA_00437 0.56 -1.3 443,980 - CCNA_00437 0.57 -0.5 443,980 - CCNA_00437 0.57 -2.4 444,031 - CCNA_00437 0.60 +0.1 444,037 - CCNA_00437 0.60 -2.5 444,069 - CCNA_00437 0.62 -0.1 444,095 - CCNA_00437 0.64 +1.5 444,097 + CCNA_00437 0.64 -1.5 444,119 + CCNA_00437 0.65 -0.3 444,127 - CCNA_00437 0.66 -0.3 444,127 - CCNA_00437 0.66 +0.9 444,138 + CCNA_00437 0.67 -0.5 444,143 + CCNA_00437 0.67 -1.5 444,168 + CCNA_00437 0.68 -0.1 444,169 + CCNA_00437 0.68 +1.8 444,218 + CCNA_00437 0.71 -0.3 444,218 - CCNA_00437 0.71 +0.9 444,226 - CCNA_00437 0.72 -1.6 444,230 + CCNA_00437 0.72 -1.0 444,238 - CCNA_00437 0.73 -1.1 444,238 - CCNA_00437 0.73 -2.1 444,238 - CCNA_00437 0.73 +0.9 444,251 + CCNA_00437 0.74 +0.7 444,264 - CCNA_00437 0.74 +0.2 444,296 + CCNA_00437 0.76 -1.2 444,368 - CCNA_00437 0.81 +1.5 444,376 - CCNA_00437 0.81 -0.5 444,376 - CCNA_00437 0.81 -0.5 444,380 + CCNA_00437 0.82 -0.5 444,383 - CCNA_00437 0.82 +2.0 444,387 + CCNA_00437 0.82 +1.9 444,388 - CCNA_00437 0.82 +3.0 444,388 - CCNA_00437 0.82 +2.7 444,411 + CCNA_00437 0.83 +0.7 444,419 - CCNA_00437 0.84 +0.2 444,420 + CCNA_00437 0.84 -0.3 444,420 + CCNA_00437 0.84 +0.5 444,420 + CCNA_00437 0.84 -0.7 444,428 - CCNA_00437 0.85 +2.5 444,494 + CCNA_00437 0.89 -0.8 444,503 + CCNA_00437 0.89 -0.1 444,511 - CCNA_00437 0.90 -0.5 444,513 + CCNA_00437 0.90 -1.9 444,520 + -1.4 444,530 - -1.8 444,541 - -0.1 444,686 + -0.6 444,694 - -0.3 444,708 - -1.5 444,708 - +0.2 444,710 - -2.2 444,715 + -0.6 444,723 - -0.8 444,723 - +1.5 444,738 + +2.0 444,758 + +0.5 444,758 + +1.4 444,758 + +0.2 444,766 + +3.8 444,766 - +0.2 444,827 - -0.1 444,827 - +1.1 444,832 - +0.5 444,848 - +1.6 444,857 - +0.8 444,858 - +1.9 444,985 + CCNA_00438 0.31 -0.1 445,006 + CCNA_00438 0.38 +2.5 445,006 + CCNA_00438 0.38 +1.5 445,013 + CCNA_00438 0.40 +0.5 445,014 - CCNA_00438 0.40 +3.2 445,021 - CCNA_00438 0.42 +3.1 445,051 - CCNA_00438 0.52 +3.4 445,055 + CCNA_00438 0.53 +1.5 445,055 + CCNA_00438 0.53 -0.3 445,063 - CCNA_00438 0.56 +2.7 445,063 - CCNA_00438 0.56 +2.5 445,083 - CCNA_00438 0.62 +2.9 445,092 + CCNA_00438 0.65 +3.1 445,108 - CCNA_00438 0.70 +0.5 445,116 - CCNA_00438 0.73 +2.6 445,141 + CCNA_00438 0.81 -1.3 445,202 - +1.3 445,202 - +0.2 445,359 - -0.5 445,376 - -0.8 445,378 + -1.6 445,491 + -0.7 445,499 - +0.9 445,499 - -1.4 445,519 + +0.3 445,526 + +0.6 445,526 + +1.2 445,526 + +2.2 445,526 + +2.5 445,526 + +0.9 445,534 - -0.3 445,534 - -1.3 445,534 - -0.3 445,534 - -1.0 445,534 - -0.1 445,567 + +1.4 445,575 - -1.3 445,599 - -1.0 445,611 + +1.7 445,650 + -0.3
Or see this region's nucleotide sequence