Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00406

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00404 and CCNA_00405 overlap by 4 nucleotidesCCNA_00405 and CCNA_00406 are separated by 101 nucleotidesCCNA_00406 and CCNA_00407 overlap by 11 nucleotidesCCNA_00407 and CCNA_00408 are separated by 32 nucleotides CCNA_00404: CCNA_00404 - hypothetical protein, at 420,699 to 421,214 _00404 CCNA_00405: CCNA_00405 - short chain dehydrogenase, at 421,211 to 422,068 _00405 CCNA_00406: CCNA_00406 - DNA transformation protein tfoX, at 422,170 to 422,538 _00406 CCNA_00407: CCNA_00407 - acetyltransferase, at 422,528 to 423,007 _00407 CCNA_00408: CCNA_00408 - antiporter protein, at 423,040 to 424,308 _00408 Position (kb) 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 421.177 kb on + strandat 421.177 kb on + strandat 421.185 kb on - strandat 421.187 kb on + strandat 421.195 kb on + strandat 421.205 kb on + strandat 421.214 kb on + strandat 421.230 kb on - strandat 421.257 kb on + strandat 421.262 kb on + strandat 421.265 kb on - strandat 421.265 kb on - strandat 421.267 kb on + strandat 421.270 kb on - strandat 421.286 kb on + strandat 421.309 kb on + strand, within CCNA_00405at 421.320 kb on + strand, within CCNA_00405at 421.333 kb on - strand, within CCNA_00405at 421.333 kb on - strand, within CCNA_00405at 421.353 kb on - strand, within CCNA_00405at 421.353 kb on - strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.362 kb on - strand, within CCNA_00405at 421.392 kb on + strand, within CCNA_00405at 421.424 kb on + strand, within CCNA_00405at 421.429 kb on + strand, within CCNA_00405at 421.437 kb on - strand, within CCNA_00405at 421.458 kb on - strand, within CCNA_00405at 421.471 kb on - strand, within CCNA_00405at 421.516 kb on + strand, within CCNA_00405at 421.518 kb on + strand, within CCNA_00405at 421.523 kb on + strand, within CCNA_00405at 421.523 kb on + strand, within CCNA_00405at 421.545 kb on + strand, within CCNA_00405at 421.567 kb on - strand, within CCNA_00405at 421.597 kb on + strand, within CCNA_00405at 421.598 kb on - strand, within CCNA_00405at 421.610 kb on + strand, within CCNA_00405at 421.627 kb on + strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.660 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.735 kb on + strand, within CCNA_00405at 421.742 kb on + strand, within CCNA_00405at 421.742 kb on + strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.750 kb on + strand, within CCNA_00405at 421.758 kb on - strand, within CCNA_00405at 421.758 kb on - strand, within CCNA_00405at 421.826 kb on - strand, within CCNA_00405at 421.831 kb on - strand, within CCNA_00405at 421.831 kb on - strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.867 kb on + strand, within CCNA_00405at 421.870 kb on - strand, within CCNA_00405at 421.883 kb on + strand, within CCNA_00405at 421.912 kb on + strand, within CCNA_00405at 421.971 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.989 kb on - strandat 422.035 kb on - strandat 422.068 kb on + strandat 422.085 kb on - strandat 422.092 kb on + strandat 422.100 kb on - strandat 422.101 kb on - strandat 422.101 kb on - strandat 422.113 kb on + strandat 422.113 kb on + strandat 422.113 kb on + strandat 422.186 kb on - strandat 422.191 kb on + strandat 422.248 kb on + strand, within CCNA_00406at 422.259 kb on + strandat 422.267 kb on - strand, within CCNA_00406at 422.268 kb on - strand, within CCNA_00406at 422.291 kb on + strand, within CCNA_00406at 422.291 kb on + strand, within CCNA_00406at 422.291 kb on + strand, within CCNA_00406at 422.299 kb on - strand, within CCNA_00406at 422.299 kb on - strand, within CCNA_00406at 422.300 kb on + strand, within CCNA_00406at 422.308 kb on - strand, within CCNA_00406at 422.308 kb on - strand, within CCNA_00406at 422.314 kb on - strand, within CCNA_00406at 422.314 kb on - strand, within CCNA_00406at 422.315 kb on + strand, within CCNA_00406at 422.325 kb on - strand, within CCNA_00406at 422.333 kb on - strand, within CCNA_00406at 422.333 kb on - strand, within CCNA_00406at 422.362 kb on + strand, within CCNA_00406at 422.368 kb on - strand, within CCNA_00406at 422.370 kb on - strand, within CCNA_00406at 422.419 kb on - strand, within CCNA_00406at 422.419 kb on - strand, within CCNA_00406at 422.424 kb on - strand, within CCNA_00406at 422.442 kb on - strand, within CCNA_00406at 422.442 kb on - strand, within CCNA_00406at 422.462 kb on + strand, within CCNA_00406at 422.462 kb on + strand, within CCNA_00406at 422.470 kb on - strandat 422.470 kb on - strand, within CCNA_00406at 422.503 kb on + strandat 422.557 kb on + strandat 422.581 kb on + strand, within CCNA_00407at 422.586 kb on + strand, within CCNA_00407at 422.596 kb on + strand, within CCNA_00407at 422.614 kb on + strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.622 kb on - strand, within CCNA_00407at 422.624 kb on + strand, within CCNA_00407at 422.624 kb on + strand, within CCNA_00407at 422.649 kb on + strand, within CCNA_00407at 422.656 kb on - strand, within CCNA_00407at 422.662 kb on - strand, within CCNA_00407at 422.718 kb on + strand, within CCNA_00407at 422.726 kb on - strand, within CCNA_00407at 422.726 kb on - strand, within CCNA_00407at 422.731 kb on + strand, within CCNA_00407at 422.742 kb on + strand, within CCNA_00407at 422.772 kb on + strand, within CCNA_00407at 422.772 kb on + strand, within CCNA_00407at 422.774 kb on - strand, within CCNA_00407at 422.783 kb on - strand, within CCNA_00407at 422.808 kb on + strand, within CCNA_00407at 422.813 kb on + strand, within CCNA_00407at 422.814 kb on - strand, within CCNA_00407at 422.816 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strandat 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.872 kb on - strand, within CCNA_00407at 422.888 kb on + strand, within CCNA_00407at 422.896 kb on - strand, within CCNA_00407at 422.896 kb on - strand, within CCNA_00407at 422.896 kb on - strand, within CCNA_00407at 422.924 kb on - strand, within CCNA_00407at 422.958 kb on - strand, within CCNA_00407at 422.959 kb on - strand, within CCNA_00407at 423.001 kb on + strandat 423.009 kb on - strandat 423.009 kb on - strandat 423.025 kb on - strandat 423.037 kb on + strandat 423.037 kb on + strandat 423.037 kb on + strandat 423.045 kb on - strandat 423.045 kb on - strandat 423.066 kb on + strandat 423.074 kb on - strandat 423.158 kb on - strandat 423.162 kb on - strandat 423.166 kb on + strandat 423.166 kb on + strandat 423.174 kb on - strand, within CCNA_00408at 423.174 kb on - strand, within CCNA_00408at 423.258 kb on + strand, within CCNA_00408at 423.258 kb on + strand, within CCNA_00408at 423.276 kb on + strand, within CCNA_00408at 423.276 kb on + strand, within CCNA_00408at 423.289 kb on - strand, within CCNA_00408at 423.301 kb on + strand, within CCNA_00408at 423.309 kb on - strand, within CCNA_00408at 423.314 kb on - strand, within CCNA_00408at 423.332 kb on - strand, within CCNA_00408at 423.337 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.346 kb on - strand, within CCNA_00408at 423.358 kb on - strand, within CCNA_00408at 423.400 kb on - strand, within CCNA_00408at 423.400 kb on - strand, within CCNA_00408at 423.435 kb on + strand, within CCNA_00408at 423.458 kb on - strand, within CCNA_00408at 423.473 kb on + strand, within CCNA_00408at 423.478 kb on + strand, within CCNA_00408at 423.481 kb on - strand, within CCNA_00408at 423.483 kb on + strand, within CCNA_00408at 423.483 kb on + strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.491 kb on - strand, within CCNA_00408at 423.505 kb on + strand, within CCNA_00408at 423.505 kb on - strand, within CCNA_00408at 423.513 kb on - strand, within CCNA_00408at 423.513 kb on - strand, within CCNA_00408

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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421,177 + +0.4
421,177 + +0.7
421,185 - -1.5
421,187 + -1.7
421,195 + -2.4
421,205 + +0.1
421,214 + -1.5
421,230 - -2.1
421,257 + -1.3
421,262 + -0.6
421,265 - -1.3
421,265 - -1.6
421,267 + -0.7
421,270 - -0.4
421,286 + -0.2
421,309 + CCNA_00405 0.11 -0.7
421,320 + CCNA_00405 0.13 +0.4
421,333 - CCNA_00405 0.14 +0.4
421,333 - CCNA_00405 0.14 -0.2
421,353 - CCNA_00405 0.17 +0.1
421,353 - CCNA_00405 0.17 -0.2
421,354 + CCNA_00405 0.17 +1.4
421,354 + CCNA_00405 0.17 +0.1
421,354 + CCNA_00405 0.17 -1.6
421,354 + CCNA_00405 0.17 +0.3
421,362 - CCNA_00405 0.18 +0.4
421,392 + CCNA_00405 0.21 -0.2
421,424 + CCNA_00405 0.25 -2.3
421,429 + CCNA_00405 0.25 -1.5
421,437 - CCNA_00405 0.26 +0.1
421,458 - CCNA_00405 0.29 -0.8
421,471 - CCNA_00405 0.30 +0.2
421,516 + CCNA_00405 0.36 +0.8
421,518 + CCNA_00405 0.36 -0.8
421,523 + CCNA_00405 0.36 +3.4
421,523 + CCNA_00405 0.36 -1.6
421,545 + CCNA_00405 0.39 +0.4
421,567 - CCNA_00405 0.41 -0.8
421,597 + CCNA_00405 0.45 -0.4
421,598 - CCNA_00405 0.45 -0.4
421,610 + CCNA_00405 0.47 +0.1
421,627 + CCNA_00405 0.48 +1.0
421,646 - CCNA_00405 0.51 +1.4
421,646 - CCNA_00405 0.51 -2.7
421,660 + CCNA_00405 0.52 -0.8
421,694 + CCNA_00405 0.56 -1.6
421,694 + CCNA_00405 0.56 -0.4
421,702 - CCNA_00405 0.57 +0.1
421,702 - CCNA_00405 0.57 -0.8
421,702 - CCNA_00405 0.57 -0.4
421,702 - CCNA_00405 0.57 +1.4
421,735 + CCNA_00405 0.61 -0.6
421,742 + CCNA_00405 0.62 -1.2
421,742 + CCNA_00405 0.62 +1.9
421,743 - CCNA_00405 0.62 -0.4
421,743 - CCNA_00405 0.62 +1.4
421,743 - CCNA_00405 0.62 +0.8
421,743 - CCNA_00405 0.62 +1.5
421,750 + CCNA_00405 0.63 -0.8
421,758 - CCNA_00405 0.64 -2.5
421,758 - CCNA_00405 0.64 -0.9
421,826 - CCNA_00405 0.72 -0.8
421,831 - CCNA_00405 0.72 +0.1
421,831 - CCNA_00405 0.72 +2.7
421,862 + CCNA_00405 0.76 -0.2
421,862 + CCNA_00405 0.76 -0.1
421,862 + CCNA_00405 0.76 -1.1
421,867 + CCNA_00405 0.76 -0.9
421,870 - CCNA_00405 0.77 -0.6
421,883 + CCNA_00405 0.78 -1.4
421,912 + CCNA_00405 0.82 -0.4
421,971 + CCNA_00405 0.89 +0.3
421,981 + CCNA_00405 0.90 -1.9
421,981 + CCNA_00405 0.90 -2.1
421,981 + CCNA_00405 0.90 +0.4
421,981 + CCNA_00405 0.90 -1.5
421,981 + CCNA_00405 0.90 -1.4
421,981 + CCNA_00405 0.90 -1.6
421,981 + CCNA_00405 0.90 -0.2
421,981 + CCNA_00405 0.90 -0.9
421,981 + CCNA_00405 0.90 -1.4
421,989 - +1.7
422,035 - -0.4
422,068 + -1.4
422,085 - -0.4
422,092 + -0.0
422,100 - -0.6
422,101 - +1.2
422,101 - -1.4
422,113 + -1.8
422,113 + -0.3
422,113 + -0.4
422,186 - -1.3
422,191 + -0.1
422,248 + CCNA_00406 0.21 -1.3
422,259 + +1.4
422,267 - CCNA_00406 0.26 +2.7
422,268 - CCNA_00406 0.27 +1.4
422,291 + CCNA_00406 0.33 +2.4
422,291 + CCNA_00406 0.33 -0.2
422,291 + CCNA_00406 0.33 -0.9
422,299 - CCNA_00406 0.35 -0.1
422,299 - CCNA_00406 0.35 -0.2
422,300 + CCNA_00406 0.35 +0.4
422,308 - CCNA_00406 0.37 +0.2
422,308 - CCNA_00406 0.37 +0.8
422,314 - CCNA_00406 0.39 +0.1
422,314 - CCNA_00406 0.39 -0.1
422,315 + CCNA_00406 0.39 +1.7
422,325 - CCNA_00406 0.42 -1.4
422,333 - CCNA_00406 0.44 -0.6
422,333 - CCNA_00406 0.44 +0.8
422,362 + CCNA_00406 0.52 +0.1
422,368 - CCNA_00406 0.54 +0.1
422,370 - CCNA_00406 0.54 +0.2
422,419 - CCNA_00406 0.67 -2.1
422,419 - CCNA_00406 0.67 -0.2
422,424 - CCNA_00406 0.69 -1.1
422,442 - CCNA_00406 0.74 -2.6
422,442 - CCNA_00406 0.74 +1.0
422,462 + CCNA_00406 0.79 -2.1
422,462 + CCNA_00406 0.79 -2.1
422,470 - +0.4
422,470 - CCNA_00406 0.81 +1.6
422,503 + -0.4
422,557 + -1.1
422,581 + CCNA_00407 0.11 -1.6
422,586 + CCNA_00407 0.12 +0.4
422,596 + CCNA_00407 0.14 +1.4
422,614 + CCNA_00407 0.18 -0.2
422,622 - CCNA_00407 0.20 -0.4
422,622 - CCNA_00407 0.20 +0.7
422,622 - CCNA_00407 0.20 +0.6
422,622 - CCNA_00407 0.20 -0.8
422,624 + CCNA_00407 0.20 +0.1
422,624 + CCNA_00407 0.20 +2.4
422,649 + CCNA_00407 0.25 -1.5
422,656 - CCNA_00407 0.27 -0.2
422,662 - CCNA_00407 0.28 -1.5
422,718 + CCNA_00407 0.40 +1.4
422,726 - CCNA_00407 0.41 -3.1
422,726 - CCNA_00407 0.41 -0.3
422,731 + CCNA_00407 0.42 -0.2
422,742 + CCNA_00407 0.45 -1.4
422,772 + CCNA_00407 0.51 -0.9
422,772 + CCNA_00407 0.51 -0.4
422,774 - CCNA_00407 0.51 -0.6
422,783 - CCNA_00407 0.53 +0.8
422,808 + CCNA_00407 0.58 -2.1
422,813 + CCNA_00407 0.59 -1.5
422,814 - CCNA_00407 0.60 +0.1
422,816 - CCNA_00407 0.60 +1.8
422,872 - CCNA_00407 0.72 +0.1
422,872 - CCNA_00407 0.72 -1.1
422,872 - +1.4
422,872 - CCNA_00407 0.72 -0.2
422,872 - CCNA_00407 0.72 -0.7
422,872 - CCNA_00407 0.72 -1.7
422,888 + CCNA_00407 0.75 +0.4
422,896 - CCNA_00407 0.77 +1.9
422,896 - CCNA_00407 0.77 +0.8
422,896 - CCNA_00407 0.77 +0.8
422,924 - CCNA_00407 0.82 +0.8
422,958 - CCNA_00407 0.90 -1.2
422,959 - CCNA_00407 0.90 -0.4
423,001 + -1.9
423,009 - +1.4
423,009 - +0.8
423,025 - +0.9
423,037 + +1.1
423,037 + -0.5
423,037 + +2.4
423,045 - +0.1
423,045 - +0.4
423,066 + +1.3
423,074 - -1.1
423,158 - +1.1
423,162 - -1.0
423,166 + -0.4
423,166 + -0.5
423,174 - CCNA_00408 0.11 +0.9
423,174 - CCNA_00408 0.11 -0.0
423,258 + CCNA_00408 0.17 +0.1
423,258 + CCNA_00408 0.17 +0.4
423,276 + CCNA_00408 0.19 +2.4
423,276 + CCNA_00408 0.19 +0.8
423,289 - CCNA_00408 0.20 +0.4
423,301 + CCNA_00408 0.21 +0.8
423,309 - CCNA_00408 0.21 +2.4
423,314 - CCNA_00408 0.22 +0.8
423,332 - CCNA_00408 0.23 -0.9
423,337 - CCNA_00408 0.23 -2.1
423,346 - CCNA_00408 0.24 +0.5
423,346 - CCNA_00408 0.24 +0.6
423,346 - CCNA_00408 0.24 -2.4
423,346 - CCNA_00408 0.24 -1.2
423,358 - CCNA_00408 0.25 -0.1
423,400 - CCNA_00408 0.28 -3.2
423,400 - CCNA_00408 0.28 -1.8
423,435 + CCNA_00408 0.31 +1.4
423,458 - CCNA_00408 0.33 +1.4
423,473 + CCNA_00408 0.34 -1.4
423,478 + CCNA_00408 0.35 +0.4
423,481 - CCNA_00408 0.35 -1.1
423,483 + CCNA_00408 0.35 -2.1
423,483 + CCNA_00408 0.35 -0.9
423,491 - CCNA_00408 0.36 -0.8
423,491 - CCNA_00408 0.36 +1.0
423,491 - CCNA_00408 0.36 -0.4
423,491 - CCNA_00408 0.36 -1.5
423,505 + CCNA_00408 0.37 -1.9
423,505 - CCNA_00408 0.37 -1.3
423,513 - CCNA_00408 0.37 -0.4
423,513 - CCNA_00408 0.37 +1.5

Or see this region's nucleotide sequence