Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00367 and CCNA_00368 are separated by 5 nucleotides CCNA_00368 and CCNA_00369 are separated by 149 nucleotides
CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825
_00367
CCNA_00368: CCNA_00368 - phosphonates transport system permease protein phnE, at 384,831 to 385,667
_00368
CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130
_00369
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 383.839 kb on + strand at 383.845 kb on + strand at 383.845 kb on + strand at 383.853 kb on - strand at 383.853 kb on - strand at 383.853 kb on - strand at 383.864 kb on + strand at 383.869 kb on + strand at 383.869 kb on + strand at 383.877 kb on - strand at 383.922 kb on - strand, within CCNA_00367 at 383.948 kb on - strand, within CCNA_00367 at 383.948 kb on - strand, within CCNA_00367 at 383.959 kb on - strand, within CCNA_00367 at 383.971 kb on - strand, within CCNA_00367 at 383.990 kb on + strand, within CCNA_00367 at 383.990 kb on + strand, within CCNA_00367 at 383.998 kb on - strand, within CCNA_00367 at 384.004 kb on + strand, within CCNA_00367 at 384.033 kb on + strand, within CCNA_00367 at 384.041 kb on - strand, within CCNA_00367 at 384.047 kb on + strand, within CCNA_00367 at 384.061 kb on + strand, within CCNA_00367 at 384.069 kb on - strand, within CCNA_00367 at 384.121 kb on + strand, within CCNA_00367 at 384.165 kb on - strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.214 kb on + strand, within CCNA_00367 at 384.214 kb on + strand, within CCNA_00367 at 384.275 kb on + strand, within CCNA_00367 at 384.283 kb on + strand, within CCNA_00367 at 384.290 kb on + strand, within CCNA_00367 at 384.295 kb on + strand, within CCNA_00367 at 384.298 kb on - strand, within CCNA_00367 at 384.303 kb on - strand, within CCNA_00367 at 384.342 kb on + strand, within CCNA_00367 at 384.354 kb on + strand, within CCNA_00367 at 384.390 kb on + strand, within CCNA_00367 at 384.390 kb on + strand, within CCNA_00367 at 384.403 kb on + strand, within CCNA_00367 at 384.416 kb on - strand, within CCNA_00367 at 384.429 kb on + strand, within CCNA_00367 at 384.429 kb on + strand, within CCNA_00367 at 384.432 kb on - strand, within CCNA_00367 at 384.437 kb on - strand, within CCNA_00367 at 384.437 kb on - strand, within CCNA_00367 at 384.492 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.515 kb on - strand, within CCNA_00367 at 384.566 kb on + strand, within CCNA_00367 at 384.574 kb on - strand, within CCNA_00367 at 384.576 kb on + strand, within CCNA_00367 at 384.579 kb on - strand, within CCNA_00367 at 384.606 kb on + strand, within CCNA_00367 at 384.611 kb on + strand, within CCNA_00367 at 384.635 kb on + strand, within CCNA_00367 at 384.635 kb on + strand, within CCNA_00367 at 384.670 kb on - strand, within CCNA_00367 at 384.670 kb on - strand, within CCNA_00367 at 384.708 kb on - strand, within CCNA_00367 at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.759 kb on - strand at 384.767 kb on + strand at 384.770 kb on - strand at 384.784 kb on + strand at 384.851 kb on + strand at 384.889 kb on + strand at 384.894 kb on + strand at 384.894 kb on + strand at 384.894 kb on + strand at 384.894 kb on + strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.909 kb on + strand at 384.910 kb on + strand at 384.914 kb on + strand at 384.914 kb on + strand at 384.925 kb on + strand, within CCNA_00368 at 384.933 kb on - strand, within CCNA_00368 at 384.933 kb on - strand, within CCNA_00368 at 384.950 kb on + strand, within CCNA_00368 at 384.974 kb on - strand, within CCNA_00368 at 385.010 kb on + strand, within CCNA_00368 at 385.020 kb on + strand, within CCNA_00368 at 385.055 kb on + strand, within CCNA_00368 at 385.077 kb on - strand, within CCNA_00368 at 385.141 kb on - strand, within CCNA_00368 at 385.141 kb on - strand, within CCNA_00368 at 385.182 kb on + strand, within CCNA_00368 at 385.216 kb on + strand, within CCNA_00368 at 385.224 kb on - strand, within CCNA_00368 at 385.229 kb on - strand, within CCNA_00368 at 385.254 kb on + strand, within CCNA_00368 at 385.277 kb on + strand, within CCNA_00368 at 385.279 kb on + strand, within CCNA_00368 at 385.313 kb on + strand, within CCNA_00368 at 385.334 kb on + strand, within CCNA_00368 at 385.415 kb on + strand, within CCNA_00368 at 385.419 kb on - strand, within CCNA_00368 at 385.423 kb on - strand, within CCNA_00368 at 385.424 kb on + strand, within CCNA_00368 at 385.449 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.470 kb on + strand, within CCNA_00368 at 385.478 kb on - strand, within CCNA_00368 at 385.488 kb on + strand, within CCNA_00368 at 385.509 kb on + strand, within CCNA_00368 at 385.517 kb on - strand, within CCNA_00368 at 385.539 kb on + strand, within CCNA_00368 at 385.604 kb on - strand at 385.643 kb on + strand at 385.645 kb on - strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.664 kb on - strand at 385.664 kb on - strand at 385.664 kb on - strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.714 kb on + strand at 385.721 kb on - strand at 385.721 kb on - strand at 385.757 kb on + strand at 385.760 kb on + strand at 385.798 kb on + strand at 385.814 kb on + strand at 385.866 kb on - strand at 385.878 kb on + strand at 385.923 kb on + strand at 385.953 kb on + strand, within CCNA_00369 at 385.957 kb on + strand, within CCNA_00369 at 385.960 kb on - strand, within CCNA_00369 at 385.966 kb on - strand, within CCNA_00369 at 385.995 kb on - strand, within CCNA_00369 at 386.010 kb on + strand, within CCNA_00369 at 386.013 kb on - strand, within CCNA_00369 at 386.094 kb on + strand, within CCNA_00369 at 386.112 kb on + strand, within CCNA_00369 at 386.112 kb on - strand, within CCNA_00369 at 386.112 kb on - strand, within CCNA_00369 at 386.147 kb on + strand, within CCNA_00369 at 386.147 kb on + strand, within CCNA_00369 at 386.155 kb on - strand, within CCNA_00369 at 386.156 kb on - strand, within CCNA_00369 at 386.159 kb on + strand, within CCNA_00369 at 386.168 kb on + strand, within CCNA_00369 at 386.171 kb on - strand, within CCNA_00369 at 386.198 kb on + strand, within CCNA_00369 at 386.211 kb on - strand, within CCNA_00369 at 386.242 kb on - strand, within CCNA_00369 at 386.247 kb on - strand, within CCNA_00369 at 386.247 kb on - strand, within CCNA_00369 at 386.261 kb on + strand, within CCNA_00369 at 386.274 kb on + strand, within CCNA_00369 at 386.280 kb on - strand, within CCNA_00369 at 386.284 kb on + strand, within CCNA_00369 at 386.298 kb on - strand, within CCNA_00369 at 386.325 kb on + strand, within CCNA_00369 at 386.333 kb on - strand, within CCNA_00369 at 386.333 kb on - strand, within CCNA_00369 at 386.352 kb on + strand, within CCNA_00369 at 386.362 kb on + strand, within CCNA_00369 at 386.362 kb on + strand, within CCNA_00369 at 386.362 kb on + strand, within CCNA_00369 at 386.370 kb on - strand, within CCNA_00369 at 386.394 kb on - strand, within CCNA_00369 at 386.396 kb on + strand, within CCNA_00369 at 386.404 kb on - strand, within CCNA_00369 at 386.406 kb on + strand, within CCNA_00369 at 386.527 kb on + strand, within CCNA_00369 at 386.562 kb on - strand, within CCNA_00369 at 386.608 kb on + strand, within CCNA_00369 at 386.616 kb on - strand, within CCNA_00369 at 386.642 kb on + strand, within CCNA_00369
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 383,839 + +2.9 383,845 + +2.4 383,845 + +1.5 383,853 - +0.8 383,853 - +0.8 383,853 - +0.4 383,864 + +1.3 383,869 + +1.8 383,869 + +2.8 383,877 - -1.3 383,922 - CCNA_00367 0.12 -0.2 383,948 - CCNA_00367 0.14 -1.2 383,948 - CCNA_00367 0.14 +0.9 383,959 - CCNA_00367 0.15 +2.4 383,971 - CCNA_00367 0.17 +0.4 383,990 + CCNA_00367 0.19 +1.8 383,990 + CCNA_00367 0.19 +1.6 383,998 - CCNA_00367 0.19 +1.8 384,004 + CCNA_00367 0.20 +3.7 384,033 + CCNA_00367 0.23 +1.5 384,041 - CCNA_00367 0.23 +2.4 384,047 + CCNA_00367 0.24 +1.6 384,061 + CCNA_00367 0.25 +1.3 384,069 - CCNA_00367 0.26 -1.0 384,121 + CCNA_00367 0.31 +0.9 384,165 - CCNA_00367 0.36 +0.4 384,205 + CCNA_00367 0.39 +1.9 384,205 + CCNA_00367 0.39 +3.2 384,205 + CCNA_00367 0.39 +1.9 384,205 + CCNA_00367 0.39 +2.4 384,205 + CCNA_00367 0.39 +1.9 384,205 + CCNA_00367 0.39 +0.5 384,205 + CCNA_00367 0.39 +2.0 384,213 - CCNA_00367 0.40 +1.4 384,213 - CCNA_00367 0.40 -0.6 384,213 - CCNA_00367 0.40 -2.0 384,213 - CCNA_00367 0.40 +0.8 384,213 - CCNA_00367 0.40 +0.8 384,213 - CCNA_00367 0.40 -0.2 384,213 - CCNA_00367 0.40 -0.1 384,214 + CCNA_00367 0.40 +1.8 384,214 + CCNA_00367 0.40 +1.2 384,275 + CCNA_00367 0.46 +3.6 384,283 + CCNA_00367 0.47 +2.6 384,290 + CCNA_00367 0.48 +2.0 384,295 + CCNA_00367 0.48 +0.9 384,298 - CCNA_00367 0.49 +1.2 384,303 - CCNA_00367 0.49 -0.2 384,342 + CCNA_00367 0.53 +2.5 384,354 + CCNA_00367 0.54 +2.2 384,390 + CCNA_00367 0.58 +1.3 384,390 + CCNA_00367 0.58 +2.0 384,403 + CCNA_00367 0.59 +2.8 384,416 - CCNA_00367 0.60 -1.1 384,429 + CCNA_00367 0.61 +1.1 384,429 + CCNA_00367 0.61 +2.0 384,432 - CCNA_00367 0.62 -0.5 384,437 - CCNA_00367 0.62 -1.3 384,437 - CCNA_00367 0.62 -0.8 384,492 + CCNA_00367 0.67 +2.5 384,507 + CCNA_00367 0.69 +1.8 384,507 + CCNA_00367 0.69 +1.7 384,515 - CCNA_00367 0.70 +0.4 384,566 + CCNA_00367 0.75 +2.3 384,574 - CCNA_00367 0.75 +1.5 384,576 + CCNA_00367 0.76 +1.7 384,579 - CCNA_00367 0.76 +0.8 384,606 + CCNA_00367 0.79 +2.2 384,611 + CCNA_00367 0.79 +2.0 384,635 + CCNA_00367 0.81 +1.1 384,635 + CCNA_00367 0.81 +1.8 384,670 - CCNA_00367 0.85 +0.4 384,670 - CCNA_00367 0.85 +0.4 384,708 - CCNA_00367 0.88 -0.2 384,726 + +1.7 384,726 + +2.6 384,726 + +3.9 384,726 + +2.7 384,726 + +1.7 384,726 + +2.0 384,726 + +1.2 384,726 + +2.5 384,726 + +2.6 384,734 - -1.2 384,734 - +1.4 384,734 - -1.0 384,734 - +0.2 384,734 - -2.9 384,734 - +2.4 384,759 - -0.9 384,767 + +1.3 384,770 - -0.6 384,784 + +3.5 384,851 + +2.4 384,889 + +3.0 384,894 + +2.2 384,894 + +2.6 384,894 + +3.4 384,894 + +2.7 384,902 - -0.8 384,902 - +0.5 384,902 - +1.4 384,902 - +0.0 384,902 - -1.1 384,909 + +1.4 384,910 + +2.2 384,914 + +3.1 384,914 + +1.9 384,925 + CCNA_00368 0.11 +2.7 384,933 - CCNA_00368 0.12 -1.7 384,933 - CCNA_00368 0.12 -0.2 384,950 + CCNA_00368 0.14 +3.2 384,974 - CCNA_00368 0.17 -0.6 385,010 + CCNA_00368 0.21 +2.3 385,020 + CCNA_00368 0.23 +3.2 385,055 + CCNA_00368 0.27 +2.7 385,077 - CCNA_00368 0.29 -0.1 385,141 - CCNA_00368 0.37 +0.8 385,141 - CCNA_00368 0.37 -2.2 385,182 + CCNA_00368 0.42 +2.4 385,216 + CCNA_00368 0.46 +3.4 385,224 - CCNA_00368 0.47 +2.4 385,229 - CCNA_00368 0.48 +2.4 385,254 + CCNA_00368 0.51 +2.6 385,277 + CCNA_00368 0.53 +2.7 385,279 + CCNA_00368 0.54 +3.2 385,313 + CCNA_00368 0.58 +2.5 385,334 + CCNA_00368 0.60 +2.4 385,415 + CCNA_00368 0.70 +2.1 385,419 - CCNA_00368 0.70 +0.8 385,423 - CCNA_00368 0.71 -0.6 385,424 + CCNA_00368 0.71 +2.2 385,449 + CCNA_00368 0.74 +2.9 385,465 + CCNA_00368 0.76 +2.4 385,465 + CCNA_00368 0.76 +1.5 385,465 + CCNA_00368 0.76 +3.0 385,465 + CCNA_00368 0.76 +2.2 385,470 + CCNA_00368 0.76 +1.8 385,478 - CCNA_00368 0.77 -0.6 385,488 + CCNA_00368 0.78 +2.8 385,509 + CCNA_00368 0.81 +3.2 385,517 - CCNA_00368 0.82 -1.2 385,539 + CCNA_00368 0.85 +3.5 385,604 - +0.0 385,643 + +3.0 385,645 - +0.0 385,656 + +2.8 385,656 + +3.0 385,656 + +3.0 385,656 + +3.1 385,661 + +2.8 385,661 + +3.1 385,664 - +1.4 385,664 - -0.2 385,664 - +1.7 385,666 + +2.7 385,666 + +2.6 385,666 + +1.8 385,666 + +2.9 385,666 + +2.7 385,666 + +2.7 385,714 + -1.7 385,721 - -2.5 385,721 - -1.8 385,757 + -1.6 385,760 + -1.2 385,798 + -0.7 385,814 + -0.2 385,866 - +1.3 385,878 + +3.6 385,923 + +1.4 385,953 + CCNA_00369 0.10 +0.3 385,957 + CCNA_00369 0.11 +1.0 385,960 - CCNA_00369 0.11 +1.4 385,966 - CCNA_00369 0.11 -0.0 385,995 - CCNA_00369 0.14 +0.2 386,010 + CCNA_00369 0.15 +1.5 386,013 - CCNA_00369 0.15 +0.4 386,094 + CCNA_00369 0.21 +1.2 386,112 + CCNA_00369 0.22 +0.7 386,112 - CCNA_00369 0.22 +0.3 386,112 - CCNA_00369 0.22 -1.1 386,147 + CCNA_00369 0.25 +1.9 386,147 + CCNA_00369 0.25 +1.6 386,155 - CCNA_00369 0.26 +2.2 386,156 - CCNA_00369 0.26 +0.4 386,159 + CCNA_00369 0.26 +1.5 386,168 + CCNA_00369 0.27 +0.3 386,171 - CCNA_00369 0.27 -2.2 386,198 + CCNA_00369 0.29 +0.1 386,211 - CCNA_00369 0.30 -1.0 386,242 - CCNA_00369 0.32 +0.0 386,247 - CCNA_00369 0.33 +3.4 386,247 - CCNA_00369 0.33 -0.6 386,261 + CCNA_00369 0.34 +1.8 386,274 + CCNA_00369 0.35 +2.6 386,280 - CCNA_00369 0.35 -0.5 386,284 + CCNA_00369 0.36 +0.8 386,298 - CCNA_00369 0.37 -1.0 386,325 + CCNA_00369 0.39 +1.4 386,333 - CCNA_00369 0.39 +1.3 386,333 - CCNA_00369 0.39 +1.1 386,352 + CCNA_00369 0.41 +0.9 386,362 + CCNA_00369 0.41 +1.0 386,362 + CCNA_00369 0.41 +0.4 386,362 + CCNA_00369 0.41 +1.6 386,370 - CCNA_00369 0.42 +0.4 386,394 - CCNA_00369 0.44 +2.0 386,396 + CCNA_00369 0.44 +1.9 386,404 - CCNA_00369 0.45 +0.5 386,406 + CCNA_00369 0.45 +0.9 386,527 + CCNA_00369 0.54 +3.4 386,562 - CCNA_00369 0.57 +0.9 386,608 + CCNA_00369 0.60 +1.7 386,616 - CCNA_00369 0.61 +1.1 386,642 + CCNA_00369 0.63 +1.3
Or see this region's nucleotide sequence