Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00243

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00240 and CCNA_00241 overlap by 4 nucleotidesCCNA_00241 and CCNA_03917 are separated by 239 nucleotidesCCNA_03917 and CCNA_00243 are separated by 67 nucleotidesCCNA_00243 and CCNA_00244 are separated by 142 nucleotidesCCNA_00244 and CCNA_00245 are separated by 28 nucleotides CCNA_00240: CCNA_00240 - PTS system, IIA component, at 255,318 to 255,725 _00240 CCNA_00241: CCNA_00241 - phosphocarrier protein HPr, at 255,722 to 256,000 _00241 CCNA_03917: CCNA_03917 - hypothetical protein, at 256,240 to 256,344 _03917 CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810 _00243 CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594 _00244 CCNA_00245: CCNA_00245 - pterin-4-alpha-carbinolamine dehydratase, at 257,623 to 257,907 _00245 Position (kb) 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 255.566 kb on + strand, within CCNA_00240at 255.697 kb on + strandat 255.708 kb on - strandat 255.733 kb on + strandat 255.734 kb on + strandat 255.921 kb on + strand, within CCNA_00241at 255.990 kb on - strandat 255.995 kb on + strandat 256.003 kb on - strandat 256.003 kb on - strandat 256.012 kb on + strandat 256.019 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.095 kb on + strandat 256.119 kb on + strandat 256.122 kb on - strandat 256.124 kb on + strandat 256.124 kb on + strandat 256.132 kb on - strandat 256.132 kb on - strandat 256.134 kb on + strandat 256.134 kb on + strandat 256.134 kb on + strandat 256.139 kb on - strandat 256.142 kb on - strandat 256.142 kb on - strandat 256.156 kb on - strandat 256.206 kb on + strandat 256.214 kb on - strandat 256.214 kb on - strandat 256.240 kb on + strandat 256.249 kb on - strandat 256.313 kb on + strand, within CCNA_03917at 256.313 kb on + strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.343 kb on - strandat 256.350 kb on - strandat 256.374 kb on + strandat 256.394 kb on + strandat 256.396 kb on - strandat 256.402 kb on - strandat 256.409 kb on - strandat 256.428 kb on + strandat 256.436 kb on - strandat 256.458 kb on - strand, within CCNA_00243at 256.479 kb on - strand, within CCNA_00243at 256.487 kb on - strand, within CCNA_00243at 256.533 kb on + strand, within CCNA_00243at 256.541 kb on - strand, within CCNA_00243at 256.541 kb on - strand, within CCNA_00243at 256.558 kb on + strand, within CCNA_00243at 256.575 kb on - strand, within CCNA_00243at 256.582 kb on - strand, within CCNA_00243at 256.614 kb on + strand, within CCNA_00243at 256.622 kb on - strand, within CCNA_00243at 256.791 kb on - strandat 256.819 kb on + strandat 256.860 kb on + strandat 256.892 kb on - strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.999 kb on - strandat 256.999 kb on - strandat 256.999 kb on - strandat 257.024 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.054 kb on - strand, within CCNA_00244at 257.074 kb on + strand, within CCNA_00244at 257.077 kb on - strand, within CCNA_00244at 257.088 kb on + strand, within CCNA_00244at 257.120 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.173 kb on + strand, within CCNA_00244at 257.181 kb on - strand, within CCNA_00244at 257.191 kb on - strand, within CCNA_00244at 257.210 kb on - strand, within CCNA_00244at 257.251 kb on - strand, within CCNA_00244at 257.259 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.307 kb on + strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.328 kb on + strand, within CCNA_00244at 257.334 kb on - strand, within CCNA_00244at 257.364 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.378 kb on + strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.394 kb on - strand, within CCNA_00244at 257.424 kb on + strand, within CCNA_00244at 257.444 kb on + strand, within CCNA_00244at 257.452 kb on - strand, within CCNA_00244at 257.495 kb on + strand, within CCNA_00244at 257.535 kb on + strandat 257.545 kb on + strandat 257.588 kb on + strandat 257.597 kb on + strandat 257.597 kb on + strandat 257.598 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.670 kb on + strand, within CCNA_00245at 257.670 kb on + strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.678 kb on - strand, within CCNA_00245at 257.691 kb on + strand, within CCNA_00245at 257.706 kb on + strand, within CCNA_00245at 257.714 kb on - strand, within CCNA_00245at 257.740 kb on + strand, within CCNA_00245at 257.787 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on - strand, within CCNA_00245at 257.809 kb on - strand, within CCNA_00245

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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255,566 + CCNA_00240 0.61 -0.2
255,697 + -0.2
255,708 - +0.4
255,733 + +0.5
255,734 + +0.5
255,921 + CCNA_00241 0.71 +0.4
255,990 - +1.4
255,995 + +2.0
256,003 - +0.8
256,003 - -1.6
256,012 + +1.1
256,019 + +1.9
256,041 + +2.1
256,041 + +1.0
256,041 + +2.7
256,041 + +1.2
256,095 + +2.9
256,119 + +0.2
256,122 - +1.9
256,124 + +0.4
256,124 + -0.2
256,132 - +0.0
256,132 - -0.2
256,134 + -0.9
256,134 + +1.8
256,134 + -0.8
256,139 - +0.8
256,142 - -0.5
256,142 - -2.2
256,156 - +1.4
256,206 + -1.2
256,214 - +0.5
256,214 - +1.2
256,240 + +1.5
256,249 - +0.6
256,313 + CCNA_03917 0.70 +0.4
256,313 + CCNA_03917 0.70 -2.3
256,321 - CCNA_03917 0.77 +1.1
256,321 - CCNA_03917 0.77 +1.2
256,343 - +0.1
256,350 - +0.0
256,374 + -0.2
256,394 + +0.0
256,396 - -0.6
256,402 - +0.9
256,409 - +0.2
256,428 + -1.7
256,436 - -1.2
256,458 - CCNA_00243 0.12 +1.5
256,479 - CCNA_00243 0.17 -0.5
256,487 - CCNA_00243 0.19 +1.2
256,533 + CCNA_00243 0.30 +2.3
256,541 - CCNA_00243 0.32 -1.5
256,541 - CCNA_00243 0.32 +1.2
256,558 + CCNA_00243 0.37 -1.9
256,575 - CCNA_00243 0.41 +0.8
256,582 - CCNA_00243 0.43 +0.8
256,614 + CCNA_00243 0.51 -1.7
256,622 - CCNA_00243 0.53 +1.4
256,791 - -0.2
256,819 + +1.0
256,860 + -0.2
256,892 - -0.8
256,991 + +0.8
256,991 + -1.7
256,999 - -2.4
256,999 - -0.7
256,999 - -2.9
257,024 + CCNA_00244 0.11 -0.2
257,046 + CCNA_00244 0.14 +1.6
257,046 + CCNA_00244 0.14 -1.0
257,054 - CCNA_00244 0.16 +0.8
257,074 + CCNA_00244 0.19 -0.2
257,077 - CCNA_00244 0.19 +0.3
257,088 + CCNA_00244 0.21 +1.3
257,120 + CCNA_00244 0.26 -1.6
257,147 + CCNA_00244 0.30 -3.1
257,147 + CCNA_00244 0.30 -1.8
257,147 + CCNA_00244 0.30 -0.2
257,147 + CCNA_00244 0.30 -0.2
257,155 - CCNA_00244 0.31 +0.8
257,155 - CCNA_00244 0.31 -1.0
257,155 - CCNA_00244 0.31 -1.6
257,155 - CCNA_00244 0.31 -0.2
257,173 + CCNA_00244 0.34 +1.3
257,181 - CCNA_00244 0.36 +0.3
257,191 - CCNA_00244 0.37 +0.0
257,210 - CCNA_00244 0.40 +0.3
257,251 - CCNA_00244 0.46 +0.9
257,259 + CCNA_00244 0.48 -1.1
257,264 + CCNA_00244 0.48 -0.5
257,264 + CCNA_00244 0.48 -0.2
257,264 + CCNA_00244 0.48 -0.1
257,272 - CCNA_00244 0.50 -2.8
257,272 - CCNA_00244 0.50 +0.8
257,272 - CCNA_00244 0.50 +1.3
257,272 - CCNA_00244 0.50 +0.5
257,272 - CCNA_00244 0.50 +0.0
257,272 - CCNA_00244 0.50 +0.0
257,272 - CCNA_00244 0.50 -0.9
257,272 - CCNA_00244 0.50 +0.3
257,307 + CCNA_00244 0.55 -0.2
257,316 - CCNA_00244 0.57 -0.6
257,316 - CCNA_00244 0.57 -1.1
257,328 + CCNA_00244 0.58 +0.9
257,334 - CCNA_00244 0.59 +0.9
257,364 + CCNA_00244 0.64 +0.8
257,366 + CCNA_00244 0.64 -0.8
257,366 + CCNA_00244 0.64 +2.3
257,374 - CCNA_00244 0.66 +0.8
257,378 + CCNA_00244 0.66 -0.2
257,386 + CCNA_00244 0.67 +0.8
257,394 - CCNA_00244 0.69 +0.0
257,424 + CCNA_00244 0.73 -0.5
257,444 + CCNA_00244 0.76 -2.1
257,452 - CCNA_00244 0.78 -0.8
257,495 + CCNA_00244 0.84 -1.1
257,535 + +0.8
257,545 + -1.2
257,588 + +0.4
257,597 + -0.8
257,597 + +0.5
257,598 + +0.8
257,617 + -1.1
257,617 + +0.8
257,617 + -0.2
257,625 - +0.4
257,625 - -1.9
257,625 - -1.1
257,670 + CCNA_00245 0.16 +0.0
257,670 + CCNA_00245 0.16 -2.5
257,672 - CCNA_00245 0.17 +1.4
257,672 - CCNA_00245 0.17 +0.0
257,678 - CCNA_00245 0.19 +0.8
257,691 + CCNA_00245 0.24 -1.6
257,706 + CCNA_00245 0.29 +0.8
257,714 - CCNA_00245 0.32 -0.6
257,740 + CCNA_00245 0.41 +0.0
257,787 + CCNA_00245 0.58 -2.4
257,809 + CCNA_00245 0.65 -0.5
257,809 + CCNA_00245 0.65 +0.0
257,809 + CCNA_00245 0.65 -0.6
257,809 - CCNA_00245 0.65 +0.3
257,809 - CCNA_00245 0.65 -2.0

Or see this region's nucleotide sequence