Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00238

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00236 and CCNA_00237 are separated by 216 nucleotidesCCNA_00237 and CCNA_00238 overlap by 26 nucleotidesCCNA_00238 and CCNA_00239 overlap by 4 nucleotidesCCNA_00239 and CCNA_00240 are separated by 75 nucleotidesCCNA_00240 and CCNA_00241 overlap by 4 nucleotides CCNA_00236: CCNA_00236 - hypothetical protein, at 250,611 to 252,308 _00236 CCNA_00237: CCNA_00237 - two-component response regulator chvI, at 252,525 to 253,232 _00237 CCNA_00238: CCNA_00238 - two-component sensor histidine kinase chvG, at 253,207 to 254,811 _00238 CCNA_00239: CCNA_00239 - serine kinase/phosphatase HprK, at 254,808 to 255,242 _00239 CCNA_00240: CCNA_00240 - PTS system, IIA component, at 255,318 to 255,725 _00240 CCNA_00241: CCNA_00241 - phosphocarrier protein HPr, at 255,722 to 256,000 _00241 Position (kb) 253 254 255Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 252.216 kb on - strandat 252.239 kb on - strandat 252.276 kb on - strandat 252.310 kb on - strandat 252.311 kb on - strandat 252.311 kb on - strandat 252.317 kb on - strandat 252.317 kb on - strandat 252.317 kb on - strandat 252.339 kb on + strandat 252.348 kb on + strandat 252.356 kb on - strandat 252.370 kb on + strandat 252.412 kb on - strandat 252.424 kb on + strandat 252.440 kb on + strandat 252.440 kb on + strandat 252.476 kb on + strandat 252.489 kb on + strandat 252.502 kb on + strandat 252.503 kb on - strandat 252.511 kb on - strandat 252.515 kb on + strandat 252.592 kb on + strandat 252.600 kb on - strand, within CCNA_00237at 252.611 kb on + strand, within CCNA_00237at 252.642 kb on - strand, within CCNA_00237at 252.647 kb on + strand, within CCNA_00237at 252.653 kb on - strandat 252.657 kb on + strand, within CCNA_00237at 252.703 kb on + strand, within CCNA_00237at 252.703 kb on + strand, within CCNA_00237at 252.711 kb on + strand, within CCNA_00237at 252.711 kb on - strand, within CCNA_00237at 252.711 kb on - strand, within CCNA_00237at 252.711 kb on - strand, within CCNA_00237at 252.733 kb on + strand, within CCNA_00237at 252.735 kb on + strand, within CCNA_00237at 252.753 kb on + strand, within CCNA_00237at 252.756 kb on - strand, within CCNA_00237at 252.760 kb on + strand, within CCNA_00237at 252.784 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.857 kb on + strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.865 kb on - strand, within CCNA_00237at 252.886 kb on + strand, within CCNA_00237at 252.901 kb on - strand, within CCNA_00237at 252.904 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.933 kb on - strand, within CCNA_00237at 252.950 kb on + strand, within CCNA_00237at 252.950 kb on + strand, within CCNA_00237at 252.950 kb on + strand, within CCNA_00237at 252.958 kb on - strand, within CCNA_00237at 252.969 kb on - strand, within CCNA_00237at 252.989 kb on + strand, within CCNA_00237at 253.034 kb on + strand, within CCNA_00237at 253.036 kb on + strand, within CCNA_00237at 253.048 kb on - strand, within CCNA_00237at 253.076 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.103 kb on + strand, within CCNA_00237at 253.106 kb on - strand, within CCNA_00237at 253.111 kb on - strand, within CCNA_00237at 253.116 kb on - strand, within CCNA_00237at 253.136 kb on + strand, within CCNA_00237at 253.136 kb on + strand, within CCNA_00237at 253.144 kb on - strand, within CCNA_00237at 253.144 kb on - strand, within CCNA_00237at 253.194 kb on + strandat 253.204 kb on + strandat 253.221 kb on + strandat 253.247 kb on + strandat 253.282 kb on + strandat 253.290 kb on - strandat 253.293 kb on + strandat 253.303 kb on + strandat 253.303 kb on + strandat 253.306 kb on - strandat 253.311 kb on - strandat 253.343 kb on + strandat 253.394 kb on - strand, within CCNA_00238at 253.395 kb on + strand, within CCNA_00238at 253.476 kb on + strand, within CCNA_00238at 253.503 kb on + strand, within CCNA_00238at 253.518 kb on + strand, within CCNA_00238at 253.533 kb on + strand, within CCNA_00238at 253.533 kb on + strand, within CCNA_00238at 253.539 kb on - strand, within CCNA_00238at 253.556 kb on - strand, within CCNA_00238at 253.563 kb on - strand, within CCNA_00238at 253.568 kb on + strand, within CCNA_00238at 253.600 kb on + strand, within CCNA_00238at 253.655 kb on - strand, within CCNA_00238at 253.655 kb on - strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.671 kb on + strand, within CCNA_00238at 253.679 kb on - strand, within CCNA_00238at 253.713 kb on + strand, within CCNA_00238at 253.721 kb on - strand, within CCNA_00238at 253.721 kb on - strand, within CCNA_00238at 253.722 kb on + strandat 253.732 kb on - strand, within CCNA_00238at 253.779 kb on + strand, within CCNA_00238at 253.815 kb on - strand, within CCNA_00238at 253.848 kb on + strand, within CCNA_00238at 253.863 kb on + strand, within CCNA_00238at 253.871 kb on - strand, within CCNA_00238at 253.871 kb on - strand, within CCNA_00238at 253.924 kb on + strand, within CCNA_00238at 253.929 kb on + strand, within CCNA_00238at 253.929 kb on + strand, within CCNA_00238at 253.935 kb on + strand, within CCNA_00238at 253.985 kb on - strand, within CCNA_00238at 254.011 kb on + strand, within CCNA_00238at 254.067 kb on + strand, within CCNA_00238at 254.175 kb on - strand, within CCNA_00238at 254.177 kb on + strand, within CCNA_00238at 254.185 kb on - strand, within CCNA_00238at 254.207 kb on + strand, within CCNA_00238at 254.256 kb on + strand, within CCNA_00238at 254.271 kb on + strand, within CCNA_00238at 254.271 kb on + strand, within CCNA_00238at 254.271 kb on + strand, within CCNA_00238at 254.291 kb on + strand, within CCNA_00238at 254.299 kb on - strand, within CCNA_00238at 254.412 kb on + strand, within CCNA_00238at 254.412 kb on + strand, within CCNA_00238at 254.437 kb on - strand, within CCNA_00238at 254.507 kb on + strand, within CCNA_00238at 254.507 kb on + strand, within CCNA_00238at 254.532 kb on + strand, within CCNA_00238at 254.547 kb on - strand, within CCNA_00238at 254.575 kb on + strand, within CCNA_00238at 254.575 kb on + strand, within CCNA_00238at 254.588 kb on - strand, within CCNA_00238at 254.631 kb on + strand, within CCNA_00238at 254.654 kb on - strandat 254.677 kb on + strandat 254.736 kb on - strandat 254.742 kb on + strandat 254.767 kb on - strandat 254.867 kb on + strand, within CCNA_00239at 255.223 kb on + strandat 255.229 kb on - strandat 255.231 kb on - strandat 255.239 kb on - strandat 255.249 kb on + strandat 255.257 kb on - strandat 255.257 kb on - strandat 255.273 kb on + strandat 255.276 kb on - strandat 255.281 kb on - strandat 255.281 kb on - strandat 255.302 kb on - strandat 255.304 kb on - strandat 255.309 kb on - strandat 255.378 kb on - strand, within CCNA_00240at 255.566 kb on + strand, within CCNA_00240at 255.697 kb on + strandat 255.708 kb on - strandat 255.733 kb on + strandat 255.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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252,216 - +0.7
252,239 - +2.3
252,276 - -1.7
252,310 - +1.9
252,311 - +0.6
252,311 - +0.2
252,317 - +0.0
252,317 - -0.1
252,317 - +1.1
252,339 + -0.8
252,348 + +2.3
252,356 - +2.3
252,370 + -0.2
252,412 - +2.3
252,424 + +0.8
252,440 + -1.1
252,440 + +0.2
252,476 + -1.6
252,489 + -0.5
252,502 + -0.1
252,503 - -1.4
252,511 - -2.7
252,515 + -1.0
252,592 + +0.0
252,600 - CCNA_00237 0.11 -2.1
252,611 + CCNA_00237 0.12 -1.8
252,642 - CCNA_00237 0.17 -1.0
252,647 + CCNA_00237 0.17 -1.0
252,653 - +2.3
252,657 + CCNA_00237 0.19 -2.9
252,703 + CCNA_00237 0.25 -1.8
252,703 + CCNA_00237 0.25 -2.3
252,711 + CCNA_00237 0.26 -2.9
252,711 - CCNA_00237 0.26 -1.0
252,711 - CCNA_00237 0.26 -2.2
252,711 - CCNA_00237 0.26 -1.6
252,733 + CCNA_00237 0.29 -3.6
252,735 + CCNA_00237 0.30 -1.8
252,753 + CCNA_00237 0.32 -3.8
252,756 - CCNA_00237 0.33 +0.8
252,760 + CCNA_00237 0.33 -2.6
252,784 + CCNA_00237 0.37 -2.2
252,857 + CCNA_00237 0.47 -2.3
252,857 + CCNA_00237 0.47 -1.5
252,857 + CCNA_00237 0.47 -3.2
252,857 + CCNA_00237 0.47 -2.9
252,857 + CCNA_00237 0.47 -3.4
252,857 + CCNA_00237 0.47 -2.7
252,857 + CCNA_00237 0.47 -1.1
252,857 + CCNA_00237 0.47 -1.7
252,857 + CCNA_00237 0.47 -2.1
252,857 + CCNA_00237 0.47 -2.7
252,857 + CCNA_00237 0.47 -1.7
252,857 + CCNA_00237 0.47 -3.8
252,865 - CCNA_00237 0.48 -0.2
252,865 - CCNA_00237 0.48 +0.3
252,865 - CCNA_00237 0.48 -0.8
252,865 - CCNA_00237 0.48 -0.5
252,865 - CCNA_00237 0.48 -1.0
252,865 - CCNA_00237 0.48 -0.2
252,865 - CCNA_00237 0.48 -1.6
252,865 - CCNA_00237 0.48 -1.5
252,865 - CCNA_00237 0.48 +0.0
252,865 - CCNA_00237 0.48 -2.1
252,865 - CCNA_00237 0.48 -1.8
252,865 - CCNA_00237 0.48 -1.8
252,865 - CCNA_00237 0.48 +0.3
252,886 + CCNA_00237 0.51 -2.6
252,901 - CCNA_00237 0.53 -1.7
252,904 - CCNA_00237 0.54 -1.6
252,933 - CCNA_00237 0.58 -1.0
252,933 - CCNA_00237 0.58 -0.2
252,933 - CCNA_00237 0.58 -3.8
252,933 - CCNA_00237 0.58 +0.3
252,950 + CCNA_00237 0.60 -3.1
252,950 + CCNA_00237 0.60 -0.5
252,950 + CCNA_00237 0.60 -1.2
252,958 - CCNA_00237 0.61 -1.2
252,969 - CCNA_00237 0.63 -2.1
252,989 + CCNA_00237 0.66 -1.9
253,034 + CCNA_00237 0.72 -2.0
253,036 + CCNA_00237 0.72 -2.1
253,048 - CCNA_00237 0.74 -2.7
253,076 + CCNA_00237 0.78 -2.1
253,103 + CCNA_00237 0.82 -2.5
253,103 + CCNA_00237 0.82 +1.8
253,103 + CCNA_00237 0.82 -2.3
253,103 + CCNA_00237 0.82 -1.5
253,106 - CCNA_00237 0.82 +0.0
253,111 - CCNA_00237 0.83 -0.7
253,116 - CCNA_00237 0.83 -2.0
253,136 + CCNA_00237 0.86 -2.8
253,136 + CCNA_00237 0.86 -1.4
253,144 - CCNA_00237 0.87 -1.0
253,144 - CCNA_00237 0.87 -3.1
253,194 + -3.3
253,204 + -4.0
253,221 + -3.7
253,247 + -0.5
253,282 + -1.3
253,290 - +1.3
253,293 + +3.3
253,303 + +1.9
253,303 + +3.3
253,306 - +0.0
253,311 - +2.3
253,343 + -4.3
253,394 - CCNA_00238 0.12 -1.2
253,395 + CCNA_00238 0.12 -1.1
253,476 + CCNA_00238 0.17 -2.9
253,503 + CCNA_00238 0.18 -2.5
253,518 + CCNA_00238 0.19 -0.7
253,533 + CCNA_00238 0.20 -1.4
253,533 + CCNA_00238 0.20 -0.2
253,539 - CCNA_00238 0.21 -0.2
253,556 - CCNA_00238 0.22 -0.5
253,563 - CCNA_00238 0.22 -0.5
253,568 + CCNA_00238 0.22 +2.3
253,600 + CCNA_00238 0.24 +0.3
253,655 - CCNA_00238 0.28 -1.9
253,655 - CCNA_00238 0.28 +0.8
253,671 + CCNA_00238 0.29 -1.7
253,671 + CCNA_00238 0.29 -2.2
253,671 + CCNA_00238 0.29 -1.6
253,671 + CCNA_00238 0.29 -2.2
253,679 - CCNA_00238 0.29 -0.2
253,713 + CCNA_00238 0.32 -2.1
253,721 - CCNA_00238 0.32 -2.4
253,721 - CCNA_00238 0.32 -2.5
253,722 + +1.3
253,732 - CCNA_00238 0.33 -1.0
253,779 + CCNA_00238 0.36 +3.3
253,815 - CCNA_00238 0.38 -2.1
253,848 + CCNA_00238 0.40 +0.8
253,863 + CCNA_00238 0.41 -1.7
253,871 - CCNA_00238 0.41 -1.2
253,871 - CCNA_00238 0.41 +0.8
253,924 + CCNA_00238 0.45 -3.9
253,929 + CCNA_00238 0.45 +0.0
253,929 + CCNA_00238 0.45 +2.1
253,935 + CCNA_00238 0.45 -1.0
253,985 - CCNA_00238 0.48 -0.2
254,011 + CCNA_00238 0.50 -1.1
254,067 + CCNA_00238 0.54 -3.6
254,175 - CCNA_00238 0.60 +1.3
254,177 + CCNA_00238 0.60 -0.8
254,185 - CCNA_00238 0.61 +0.0
254,207 + CCNA_00238 0.62 -3.2
254,256 + CCNA_00238 0.65 -2.5
254,271 + CCNA_00238 0.66 -1.6
254,271 + CCNA_00238 0.66 -1.2
254,271 + CCNA_00238 0.66 +0.8
254,291 + CCNA_00238 0.68 -2.9
254,299 - CCNA_00238 0.68 -1.4
254,412 + CCNA_00238 0.75 -2.6
254,412 + CCNA_00238 0.75 -2.3
254,437 - CCNA_00238 0.77 -1.2
254,507 + CCNA_00238 0.81 -3.3
254,507 + CCNA_00238 0.81 -1.0
254,532 + CCNA_00238 0.83 -0.6
254,547 - CCNA_00238 0.83 +1.3
254,575 + CCNA_00238 0.85 -2.9
254,575 + CCNA_00238 0.85 -2.7
254,588 - CCNA_00238 0.86 +0.3
254,631 + CCNA_00238 0.89 +0.3
254,654 - -2.9
254,677 + -0.2
254,736 - -0.7
254,742 + -2.2
254,767 - -1.2
254,867 + CCNA_00239 0.14 +2.3
255,223 + +0.2
255,229 - +2.4
255,231 - +2.7
255,239 - +1.5
255,249 + +2.4
255,257 - +2.4
255,257 - +0.8
255,273 + +2.3
255,276 - -0.8
255,281 - -1.8
255,281 - -0.6
255,302 - -1.3
255,304 - -0.8
255,309 - +2.8
255,378 - CCNA_00240 0.15 -0.5
255,566 + CCNA_00240 0.61 -0.2
255,697 + -0.2
255,708 - +0.4
255,733 + +0.5
255,734 + +0.5

Or see this region's nucleotide sequence