Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00236 and CCNA_00237 are separated by 216 nucleotides CCNA_00237 and CCNA_00238 overlap by 26 nucleotides
CCNA_00236: CCNA_00236 - hypothetical protein, at 250,611 to 252,308
_00236
CCNA_00237: CCNA_00237 - two-component response regulator chvI, at 252,525 to 253,232
_00237
CCNA_00238: CCNA_00238 - two-component sensor histidine kinase chvG, at 253,207 to 254,811
_00238
Position (kb)
252
253
254 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 251.534 kb on - strand, within CCNA_00236 at 251.565 kb on - strand, within CCNA_00236 at 251.580 kb on - strand, within CCNA_00236 at 251.615 kb on + strand, within CCNA_00236 at 251.649 kb on - strand, within CCNA_00236 at 251.767 kb on + strand, within CCNA_00236 at 251.779 kb on + strand, within CCNA_00236 at 251.794 kb on + strand, within CCNA_00236 at 251.811 kb on - strand, within CCNA_00236 at 251.813 kb on + strand, within CCNA_00236 at 251.815 kb on + strand, within CCNA_00236 at 251.823 kb on - strand, within CCNA_00236 at 251.839 kb on + strand, within CCNA_00236 at 251.870 kb on - strand, within CCNA_00236 at 251.870 kb on - strand, within CCNA_00236 at 251.871 kb on - strand, within CCNA_00236 at 251.880 kb on + strand, within CCNA_00236 at 251.888 kb on - strand, within CCNA_00236 at 251.888 kb on - strand, within CCNA_00236 at 251.892 kb on + strand, within CCNA_00236 at 251.900 kb on + strand, within CCNA_00236 at 251.915 kb on + strand, within CCNA_00236 at 251.933 kb on + strand, within CCNA_00236 at 251.941 kb on - strand, within CCNA_00236 at 251.941 kb on - strand, within CCNA_00236 at 251.941 kb on - strand, within CCNA_00236 at 251.943 kb on + strand, within CCNA_00236 at 251.951 kb on - strand, within CCNA_00236 at 251.968 kb on - strand, within CCNA_00236 at 251.973 kb on - strand, within CCNA_00236 at 252.023 kb on - strand, within CCNA_00236 at 252.025 kb on + strand, within CCNA_00236 at 252.025 kb on + strand, within CCNA_00236 at 252.025 kb on + strand, within CCNA_00236 at 252.033 kb on - strand, within CCNA_00236 at 252.033 kb on - strand, within CCNA_00236 at 252.033 kb on - strand, within CCNA_00236 at 252.033 kb on - strand, within CCNA_00236 at 252.041 kb on + strand, within CCNA_00236 at 252.046 kb on + strand, within CCNA_00236 at 252.054 kb on - strand, within CCNA_00236 at 252.064 kb on - strand, within CCNA_00236 at 252.104 kb on - strand, within CCNA_00236 at 252.122 kb on - strand, within CCNA_00236 at 252.147 kb on - strand at 252.167 kb on + strand at 252.167 kb on + strand at 252.175 kb on - strand at 252.175 kb on - strand at 252.186 kb on + strand at 252.186 kb on + strand at 252.186 kb on + strand at 252.186 kb on + strand at 252.186 kb on + strand at 252.186 kb on + strand at 252.193 kb on + strand at 252.194 kb on - strand at 252.194 kb on - strand at 252.194 kb on - strand at 252.194 kb on - strand at 252.201 kb on + strand at 252.216 kb on - strand at 252.239 kb on - strand at 252.276 kb on - strand at 252.310 kb on - strand at 252.311 kb on - strand at 252.311 kb on - strand at 252.317 kb on - strand at 252.317 kb on - strand at 252.317 kb on - strand at 252.339 kb on + strand at 252.348 kb on + strand at 252.356 kb on - strand at 252.370 kb on + strand at 252.412 kb on - strand at 252.424 kb on + strand at 252.440 kb on + strand at 252.440 kb on + strand at 252.476 kb on + strand at 252.489 kb on + strand at 252.502 kb on + strand at 252.503 kb on - strand at 252.511 kb on - strand at 252.515 kb on + strand at 252.592 kb on + strand at 252.600 kb on - strand, within CCNA_00237 at 252.611 kb on + strand, within CCNA_00237 at 252.642 kb on - strand, within CCNA_00237 at 252.647 kb on + strand, within CCNA_00237 at 252.653 kb on - strand at 252.657 kb on + strand, within CCNA_00237 at 252.703 kb on + strand, within CCNA_00237 at 252.703 kb on + strand, within CCNA_00237 at 252.711 kb on + strand, within CCNA_00237 at 252.711 kb on - strand, within CCNA_00237 at 252.711 kb on - strand, within CCNA_00237 at 252.711 kb on - strand, within CCNA_00237 at 252.733 kb on + strand, within CCNA_00237 at 252.735 kb on + strand, within CCNA_00237 at 252.753 kb on + strand, within CCNA_00237 at 252.756 kb on - strand, within CCNA_00237 at 252.760 kb on + strand, within CCNA_00237 at 252.784 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.857 kb on + strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.865 kb on - strand, within CCNA_00237 at 252.886 kb on + strand, within CCNA_00237 at 252.901 kb on - strand, within CCNA_00237 at 252.904 kb on - strand, within CCNA_00237 at 252.933 kb on - strand, within CCNA_00237 at 252.933 kb on - strand, within CCNA_00237 at 252.933 kb on - strand, within CCNA_00237 at 252.933 kb on - strand, within CCNA_00237 at 252.950 kb on + strand, within CCNA_00237 at 252.950 kb on + strand, within CCNA_00237 at 252.950 kb on + strand, within CCNA_00237 at 252.958 kb on - strand, within CCNA_00237 at 252.969 kb on - strand, within CCNA_00237 at 252.989 kb on + strand, within CCNA_00237 at 253.034 kb on + strand, within CCNA_00237 at 253.036 kb on + strand, within CCNA_00237 at 253.048 kb on - strand, within CCNA_00237 at 253.076 kb on + strand, within CCNA_00237 at 253.103 kb on + strand, within CCNA_00237 at 253.103 kb on + strand, within CCNA_00237 at 253.103 kb on + strand, within CCNA_00237 at 253.103 kb on + strand, within CCNA_00237 at 253.106 kb on - strand, within CCNA_00237 at 253.111 kb on - strand, within CCNA_00237 at 253.116 kb on - strand, within CCNA_00237 at 253.136 kb on + strand, within CCNA_00237 at 253.136 kb on + strand, within CCNA_00237 at 253.144 kb on - strand, within CCNA_00237 at 253.144 kb on - strand, within CCNA_00237 at 253.194 kb on + strand at 253.204 kb on + strand at 253.221 kb on + strand at 253.247 kb on + strand at 253.282 kb on + strand at 253.290 kb on - strand at 253.293 kb on + strand at 253.303 kb on + strand at 253.303 kb on + strand at 253.306 kb on - strand at 253.311 kb on - strand at 253.343 kb on + strand at 253.394 kb on - strand, within CCNA_00238 at 253.395 kb on + strand, within CCNA_00238 at 253.476 kb on + strand, within CCNA_00238 at 253.503 kb on + strand, within CCNA_00238 at 253.518 kb on + strand, within CCNA_00238 at 253.533 kb on + strand, within CCNA_00238 at 253.533 kb on + strand, within CCNA_00238 at 253.539 kb on - strand, within CCNA_00238 at 253.556 kb on - strand, within CCNA_00238 at 253.563 kb on - strand, within CCNA_00238 at 253.568 kb on + strand, within CCNA_00238 at 253.600 kb on + strand, within CCNA_00238 at 253.655 kb on - strand, within CCNA_00238 at 253.655 kb on - strand, within CCNA_00238 at 253.671 kb on + strand, within CCNA_00238 at 253.671 kb on + strand, within CCNA_00238 at 253.671 kb on + strand, within CCNA_00238 at 253.671 kb on + strand, within CCNA_00238 at 253.679 kb on - strand, within CCNA_00238 at 253.713 kb on + strand, within CCNA_00238 at 253.721 kb on - strand, within CCNA_00238 at 253.721 kb on - strand, within CCNA_00238 at 253.722 kb on + strand at 253.732 kb on - strand, within CCNA_00238 at 253.779 kb on + strand, within CCNA_00238 at 253.815 kb on - strand, within CCNA_00238 at 253.848 kb on + strand, within CCNA_00238 at 253.863 kb on + strand, within CCNA_00238 at 253.871 kb on - strand, within CCNA_00238 at 253.871 kb on - strand, within CCNA_00238 at 253.924 kb on + strand, within CCNA_00238 at 253.929 kb on + strand, within CCNA_00238 at 253.929 kb on + strand, within CCNA_00238 at 253.935 kb on + strand, within CCNA_00238 at 253.985 kb on - strand, within CCNA_00238 at 254.011 kb on + strand, within CCNA_00238 at 254.067 kb on + strand, within CCNA_00238 at 254.175 kb on - strand, within CCNA_00238 at 254.177 kb on + strand, within CCNA_00238 at 254.185 kb on - strand, within CCNA_00238 at 254.207 kb on + strand, within CCNA_00238
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml remove 251,534 - CCNA_00236 0.54 +1.2 251,565 - CCNA_00236 0.56 -0.8 251,580 - CCNA_00236 0.57 +1.2 251,615 + CCNA_00236 0.59 +0.0 251,649 - CCNA_00236 0.61 +0.8 251,767 + CCNA_00236 0.68 +2.1 251,779 + CCNA_00236 0.69 +0.6 251,794 + CCNA_00236 0.70 -0.8 251,811 - CCNA_00236 0.71 -1.1 251,813 + CCNA_00236 0.71 -0.5 251,815 + CCNA_00236 0.71 +0.3 251,823 - CCNA_00236 0.71 -0.1 251,839 + CCNA_00236 0.72 -0.5 251,870 - CCNA_00236 0.74 +1.6 251,870 - CCNA_00236 0.74 +0.9 251,871 - CCNA_00236 0.74 +0.5 251,880 + CCNA_00236 0.75 -0.7 251,888 - CCNA_00236 0.75 -0.5 251,888 - CCNA_00236 0.75 +0.4 251,892 + CCNA_00236 0.75 +0.0 251,900 + CCNA_00236 0.76 -1.0 251,915 + CCNA_00236 0.77 -0.5 251,933 + CCNA_00236 0.78 +0.4 251,941 - CCNA_00236 0.78 +1.3 251,941 - CCNA_00236 0.78 -1.8 251,941 - CCNA_00236 0.78 -0.8 251,943 + CCNA_00236 0.78 -1.8 251,951 - CCNA_00236 0.79 +0.2 251,968 - CCNA_00236 0.80 -1.0 251,973 - CCNA_00236 0.80 -1.1 252,023 - CCNA_00236 0.83 +2.1 252,025 + CCNA_00236 0.83 +1.3 252,025 + CCNA_00236 0.83 +0.3 252,025 + CCNA_00236 0.83 -2.1 252,033 - CCNA_00236 0.84 -1.2 252,033 - CCNA_00236 0.84 +0.3 252,033 - CCNA_00236 0.84 -2.6 252,033 - CCNA_00236 0.84 -0.1 252,041 + CCNA_00236 0.84 +1.3 252,046 + CCNA_00236 0.85 +0.8 252,054 - CCNA_00236 0.85 -1.7 252,064 - CCNA_00236 0.86 -0.2 252,104 - CCNA_00236 0.88 -1.7 252,122 - CCNA_00236 0.89 -1.0 252,147 - +0.6 252,167 + +0.0 252,167 + -0.4 252,175 - -0.8 252,175 - +3.3 252,186 + +0.9 252,186 + -0.1 252,186 + -0.8 252,186 + -1.7 252,186 + +0.0 252,186 + -0.2 252,193 + -0.8 252,194 - -1.1 252,194 - -1.1 252,194 - -1.6 252,194 - +0.7 252,201 + -2.2 252,216 - +0.7 252,239 - +2.3 252,276 - -1.7 252,310 - +1.9 252,311 - +0.6 252,311 - +0.2 252,317 - +0.0 252,317 - -0.1 252,317 - +1.1 252,339 + -0.8 252,348 + +2.3 252,356 - +2.3 252,370 + -0.2 252,412 - +2.3 252,424 + +0.8 252,440 + -1.1 252,440 + +0.2 252,476 + -1.6 252,489 + -0.5 252,502 + -0.1 252,503 - -1.4 252,511 - -2.7 252,515 + -1.0 252,592 + +0.0 252,600 - CCNA_00237 0.11 -2.1 252,611 + CCNA_00237 0.12 -1.8 252,642 - CCNA_00237 0.17 -1.0 252,647 + CCNA_00237 0.17 -1.0 252,653 - +2.3 252,657 + CCNA_00237 0.19 -2.9 252,703 + CCNA_00237 0.25 -1.8 252,703 + CCNA_00237 0.25 -2.3 252,711 + CCNA_00237 0.26 -2.9 252,711 - CCNA_00237 0.26 -1.0 252,711 - CCNA_00237 0.26 -2.2 252,711 - CCNA_00237 0.26 -1.6 252,733 + CCNA_00237 0.29 -3.6 252,735 + CCNA_00237 0.30 -1.8 252,753 + CCNA_00237 0.32 -3.8 252,756 - CCNA_00237 0.33 +0.8 252,760 + CCNA_00237 0.33 -2.6 252,784 + CCNA_00237 0.37 -2.2 252,857 + CCNA_00237 0.47 -2.3 252,857 + CCNA_00237 0.47 -1.5 252,857 + CCNA_00237 0.47 -3.2 252,857 + CCNA_00237 0.47 -2.9 252,857 + CCNA_00237 0.47 -3.4 252,857 + CCNA_00237 0.47 -2.7 252,857 + CCNA_00237 0.47 -1.1 252,857 + CCNA_00237 0.47 -1.7 252,857 + CCNA_00237 0.47 -2.1 252,857 + CCNA_00237 0.47 -2.7 252,857 + CCNA_00237 0.47 -1.7 252,857 + CCNA_00237 0.47 -3.8 252,865 - CCNA_00237 0.48 -0.2 252,865 - CCNA_00237 0.48 +0.3 252,865 - CCNA_00237 0.48 -0.8 252,865 - CCNA_00237 0.48 -0.5 252,865 - CCNA_00237 0.48 -1.0 252,865 - CCNA_00237 0.48 -0.2 252,865 - CCNA_00237 0.48 -1.6 252,865 - CCNA_00237 0.48 -1.5 252,865 - CCNA_00237 0.48 +0.0 252,865 - CCNA_00237 0.48 -2.1 252,865 - CCNA_00237 0.48 -1.8 252,865 - CCNA_00237 0.48 -1.8 252,865 - CCNA_00237 0.48 +0.3 252,886 + CCNA_00237 0.51 -2.6 252,901 - CCNA_00237 0.53 -1.7 252,904 - CCNA_00237 0.54 -1.6 252,933 - CCNA_00237 0.58 -1.0 252,933 - CCNA_00237 0.58 -0.2 252,933 - CCNA_00237 0.58 -3.8 252,933 - CCNA_00237 0.58 +0.3 252,950 + CCNA_00237 0.60 -3.1 252,950 + CCNA_00237 0.60 -0.5 252,950 + CCNA_00237 0.60 -1.2 252,958 - CCNA_00237 0.61 -1.2 252,969 - CCNA_00237 0.63 -2.1 252,989 + CCNA_00237 0.66 -1.9 253,034 + CCNA_00237 0.72 -2.0 253,036 + CCNA_00237 0.72 -2.1 253,048 - CCNA_00237 0.74 -2.7 253,076 + CCNA_00237 0.78 -2.1 253,103 + CCNA_00237 0.82 -2.5 253,103 + CCNA_00237 0.82 +1.8 253,103 + CCNA_00237 0.82 -2.3 253,103 + CCNA_00237 0.82 -1.5 253,106 - CCNA_00237 0.82 +0.0 253,111 - CCNA_00237 0.83 -0.7 253,116 - CCNA_00237 0.83 -2.0 253,136 + CCNA_00237 0.86 -2.8 253,136 + CCNA_00237 0.86 -1.4 253,144 - CCNA_00237 0.87 -1.0 253,144 - CCNA_00237 0.87 -3.1 253,194 + -3.3 253,204 + -4.0 253,221 + -3.7 253,247 + -0.5 253,282 + -1.3 253,290 - +1.3 253,293 + +3.3 253,303 + +1.9 253,303 + +3.3 253,306 - +0.0 253,311 - +2.3 253,343 + -4.3 253,394 - CCNA_00238 0.12 -1.2 253,395 + CCNA_00238 0.12 -1.1 253,476 + CCNA_00238 0.17 -2.9 253,503 + CCNA_00238 0.18 -2.5 253,518 + CCNA_00238 0.19 -0.7 253,533 + CCNA_00238 0.20 -1.4 253,533 + CCNA_00238 0.20 -0.2 253,539 - CCNA_00238 0.21 -0.2 253,556 - CCNA_00238 0.22 -0.5 253,563 - CCNA_00238 0.22 -0.5 253,568 + CCNA_00238 0.22 +2.3 253,600 + CCNA_00238 0.24 +0.3 253,655 - CCNA_00238 0.28 -1.9 253,655 - CCNA_00238 0.28 +0.8 253,671 + CCNA_00238 0.29 -1.7 253,671 + CCNA_00238 0.29 -2.2 253,671 + CCNA_00238 0.29 -1.6 253,671 + CCNA_00238 0.29 -2.2 253,679 - CCNA_00238 0.29 -0.2 253,713 + CCNA_00238 0.32 -2.1 253,721 - CCNA_00238 0.32 -2.4 253,721 - CCNA_00238 0.32 -2.5 253,722 + +1.3 253,732 - CCNA_00238 0.33 -1.0 253,779 + CCNA_00238 0.36 +3.3 253,815 - CCNA_00238 0.38 -2.1 253,848 + CCNA_00238 0.40 +0.8 253,863 + CCNA_00238 0.41 -1.7 253,871 - CCNA_00238 0.41 -1.2 253,871 - CCNA_00238 0.41 +0.8 253,924 + CCNA_00238 0.45 -3.9 253,929 + CCNA_00238 0.45 +0.0 253,929 + CCNA_00238 0.45 +2.1 253,935 + CCNA_00238 0.45 -1.0 253,985 - CCNA_00238 0.48 -0.2 254,011 + CCNA_00238 0.50 -1.1 254,067 + CCNA_00238 0.54 -3.6 254,175 - CCNA_00238 0.60 +1.3 254,177 + CCNA_00238 0.60 -0.8 254,185 - CCNA_00238 0.61 +0.0 254,207 + CCNA_00238 0.62 -3.2
Or see this region's nucleotide sequence