Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00223

Experiment: PYE with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00222 and CCNA_00223 are separated by 8 nucleotidesCCNA_00223 and CCNA_00224 overlap by 4 nucleotides CCNA_00222: CCNA_00222 - glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase, at 238,241 to 239,860 _00222 CCNA_00223: CCNA_00223 - esterase lipase Family protein, at 239,869 to 240,651 _00223 CCNA_00224: CCNA_00224 - TonB-dependent receptor protein, at 240,648 to 242,693 _00224 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2 3at 239.814 kb on + strandat 239.878 kb on + strandat 239.929 kb on - strandat 239.955 kb on + strand, within CCNA_00223at 240.014 kb on - strand, within CCNA_00223at 240.028 kb on + strand, within CCNA_00223at 240.036 kb on + strand, within CCNA_00223at 240.036 kb on - strand, within CCNA_00223at 240.042 kb on - strand, within CCNA_00223at 240.050 kb on + strand, within CCNA_00223at 240.058 kb on - strand, within CCNA_00223at 240.061 kb on + strand, within CCNA_00223at 240.061 kb on + strand, within CCNA_00223at 240.069 kb on - strand, within CCNA_00223at 240.074 kb on - strand, within CCNA_00223at 240.082 kb on + strand, within CCNA_00223at 240.105 kb on - strand, within CCNA_00223at 240.152 kb on - strand, within CCNA_00223at 240.152 kb on - strand, within CCNA_00223at 240.162 kb on - strand, within CCNA_00223at 240.223 kb on + strand, within CCNA_00223at 240.269 kb on - strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.328 kb on + strand, within CCNA_00223at 240.397 kb on + strand, within CCNA_00223at 240.404 kb on + strand, within CCNA_00223at 240.430 kb on - strand, within CCNA_00223at 240.460 kb on - strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.498 kb on + strand, within CCNA_00223at 240.503 kb on + strand, within CCNA_00223at 240.511 kb on - strand, within CCNA_00223at 240.516 kb on + strand, within CCNA_00223at 240.524 kb on - strand, within CCNA_00223at 240.524 kb on - strand, within CCNA_00223at 240.531 kb on + strand, within CCNA_00223at 240.547 kb on + strand, within CCNA_00223at 240.555 kb on - strand, within CCNA_00223at 240.674 kb on + strandat 240.674 kb on + strandat 240.674 kb on + strandat 240.682 kb on - strandat 240.682 kb on - strandat 240.702 kb on + strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.710 kb on - strandat 240.741 kb on + strandat 240.749 kb on - strandat 240.749 kb on - strandat 240.762 kb on + strandat 240.791 kb on - strandat 240.815 kb on + strandat 240.822 kb on - strandat 240.822 kb on - strandat 240.834 kb on - strandat 240.840 kb on + strandat 240.848 kb on - strandat 240.864 kb on + strand, within CCNA_00224at 240.864 kb on + strand, within CCNA_00224at 240.869 kb on + strand, within CCNA_00224at 240.923 kb on + strand, within CCNA_00224at 240.925 kb on + strand, within CCNA_00224at 240.933 kb on - strand, within CCNA_00224at 240.942 kb on + strand, within CCNA_00224at 241.017 kb on + strand, within CCNA_00224at 241.039 kb on - strand, within CCNA_00224at 241.039 kb on - strand, within CCNA_00224at 241.106 kb on - strand, within CCNA_00224at 241.116 kb on - strand, within CCNA_00224at 241.228 kb on + strand, within CCNA_00224at 241.261 kb on + strand, within CCNA_00224at 241.284 kb on - strand, within CCNA_00224at 241.303 kb on + strand, within CCNA_00224at 241.319 kb on + strand, within CCNA_00224at 241.338 kb on - strand, within CCNA_00224at 241.353 kb on - strand, within CCNA_00224at 241.422 kb on - strand, within CCNA_00224at 241.430 kb on - strand, within CCNA_00224at 241.437 kb on + strand, within CCNA_00224at 241.438 kb on + strand, within CCNA_00224at 241.470 kb on - strand, within CCNA_00224at 241.488 kb on + strand, within CCNA_00224at 241.548 kb on - strand, within CCNA_00224at 241.548 kb on - strand, within CCNA_00224at 241.548 kb on - strand, within CCNA_00224at 241.553 kb on - strand, within CCNA_00224at 241.565 kb on + strand, within CCNA_00224at 241.565 kb on + strand, within CCNA_00224at 241.567 kb on + strand, within CCNA_00224at 241.573 kb on + strand, within CCNA_00224at 241.575 kb on - strand, within CCNA_00224at 241.581 kb on - strand, within CCNA_00224at 241.581 kb on - strand, within CCNA_00224at 241.585 kb on - strand, within CCNA_00224at 241.598 kb on - strand, within CCNA_00224at 241.626 kb on - strand, within CCNA_00224at 241.636 kb on + strand, within CCNA_00224at 241.644 kb on + strand, within CCNA_00224at 241.644 kb on + strand, within CCNA_00224

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Polymyxin B sulfate 0.005 mg/ml
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239,814 + +0.3
239,878 + +0.6
239,929 - -1.3
239,955 + CCNA_00223 0.11 +0.7
240,014 - CCNA_00223 0.19 +0.3
240,028 + CCNA_00223 0.20 +1.8
240,036 + CCNA_00223 0.21 +1.5
240,036 - CCNA_00223 0.21 -1.3
240,042 - CCNA_00223 0.22 -1.0
240,050 + CCNA_00223 0.23 +1.0
240,058 - CCNA_00223 0.24 +1.3
240,061 + CCNA_00223 0.25 +2.2
240,061 + CCNA_00223 0.25 +1.2
240,069 - CCNA_00223 0.26 -1.5
240,074 - CCNA_00223 0.26 -0.8
240,082 + CCNA_00223 0.27 +2.1
240,105 - CCNA_00223 0.30 +0.3
240,152 - CCNA_00223 0.36 -1.4
240,152 - CCNA_00223 0.36 +0.7
240,162 - CCNA_00223 0.37 +3.3
240,223 + CCNA_00223 0.45 +1.2
240,269 - CCNA_00223 0.51 +1.2
240,312 + CCNA_00223 0.57 +0.7
240,312 + CCNA_00223 0.57 -0.5
240,312 + CCNA_00223 0.57 +0.0
240,318 + CCNA_00223 0.57 -0.9
240,320 - CCNA_00223 0.58 -1.3
240,320 - CCNA_00223 0.58 -0.7
240,320 - CCNA_00223 0.58 -1.8
240,320 - CCNA_00223 0.58 +1.3
240,320 - CCNA_00223 0.58 -0.3
240,326 - CCNA_00223 0.58 +0.0
240,328 + CCNA_00223 0.59 +1.3
240,397 + CCNA_00223 0.67 -1.4
240,404 + CCNA_00223 0.68 +0.3
240,430 - CCNA_00223 0.72 -0.3
240,460 - CCNA_00223 0.75 -0.8
240,468 + CCNA_00223 0.77 +0.5
240,468 + CCNA_00223 0.77 -0.7
240,468 + CCNA_00223 0.77 +0.6
240,498 + CCNA_00223 0.80 -0.5
240,503 + CCNA_00223 0.81 -1.6
240,511 - CCNA_00223 0.82 +0.7
240,516 + CCNA_00223 0.83 +0.6
240,524 - CCNA_00223 0.84 -1.3
240,524 - CCNA_00223 0.84 +0.0
240,531 + CCNA_00223 0.85 +0.4
240,547 + CCNA_00223 0.87 +0.4
240,555 - CCNA_00223 0.88 +0.0
240,674 + +0.9
240,674 + -0.3
240,674 + +0.0
240,682 - +1.0
240,682 - +1.0
240,702 + -1.0
240,710 - +1.0
240,710 - -0.2
240,710 - +2.3
240,710 - +0.8
240,710 - +0.5
240,741 + -0.3
240,749 - +0.5
240,749 - +1.4
240,762 + -0.3
240,791 - +0.9
240,815 + +0.7
240,822 - +0.7
240,822 - +0.4
240,834 - -0.7
240,840 + -0.4
240,848 - +0.7
240,864 + CCNA_00224 0.11 -1.0
240,864 + CCNA_00224 0.11 +1.3
240,869 + CCNA_00224 0.11 +0.1
240,923 + CCNA_00224 0.13 -0.2
240,925 + CCNA_00224 0.14 -0.8
240,933 - CCNA_00224 0.14 +0.5
240,942 + CCNA_00224 0.14 +0.3
241,017 + CCNA_00224 0.18 -0.8
241,039 - CCNA_00224 0.19 +1.2
241,039 - CCNA_00224 0.19 +0.5
241,106 - CCNA_00224 0.22 +0.4
241,116 - CCNA_00224 0.23 +0.7
241,228 + CCNA_00224 0.28 +0.7
241,261 + CCNA_00224 0.30 +0.1
241,284 - CCNA_00224 0.31 -0.4
241,303 + CCNA_00224 0.32 -1.8
241,319 + CCNA_00224 0.33 +2.3
241,338 - CCNA_00224 0.34 +1.0
241,353 - CCNA_00224 0.34 +1.3
241,422 - CCNA_00224 0.38 +0.3
241,430 - CCNA_00224 0.38 +0.6
241,437 + CCNA_00224 0.39 -0.8
241,438 + CCNA_00224 0.39 -0.8
241,470 - CCNA_00224 0.40 +0.5
241,488 + CCNA_00224 0.41 +0.7
241,548 - CCNA_00224 0.44 +1.1
241,548 - CCNA_00224 0.44 +0.6
241,548 - CCNA_00224 0.44 +0.8
241,553 - CCNA_00224 0.44 +0.7
241,565 + CCNA_00224 0.45 -0.3
241,565 + CCNA_00224 0.45 -0.7
241,567 + CCNA_00224 0.45 -0.9
241,573 + CCNA_00224 0.45 -1.0
241,575 - CCNA_00224 0.45 +2.3
241,581 - CCNA_00224 0.46 +1.1
241,581 - CCNA_00224 0.46 +0.3
241,585 - CCNA_00224 0.46 +0.2
241,598 - CCNA_00224 0.46 +0.8
241,626 - CCNA_00224 0.48 +1.1
241,636 + CCNA_00224 0.48 +0.3
241,644 + CCNA_00224 0.49 +0.7
241,644 + CCNA_00224 0.49 +0.7

Or see this region's nucleotide sequence